Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00014228 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 5659072 ~ 5678499 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0009123 | nucleoside monophosphate metabolic process | biological_process |
| GO:0009124 | nucleoside monophosphate biosynthetic process | biological_process |
| GO:0009126 | purine nucleoside monophosphate metabolic process | biological_process |
| GO:0009127 | purine nucleoside monophosphate biosynthetic process | biological_process |
| GO:0009156 | ribonucleoside monophosphate biosynthetic process | biological_process |
| GO:0009161 | ribonucleoside monophosphate metabolic process | biological_process |
| GO:0009167 | purine ribonucleoside monophosphate metabolic process | biological_process |
| GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | biological_process |
| GO:1990351 | transporter complex | cellular_component |
| GO:0034702 | ion channel complex | cellular_component |
| GO:0034703 | cation channel complex | cellular_component |
| GO:0034704 | calcium channel complex | cellular_component |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:1902495 | transmembrane transporter complex | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00014228 | True | 2299 | mRNA | 0.52 | 8 | 5659072 | 5678472 |
| TU85680 | False | 416 | lncRNA | 0.57 | 2 | 5676762 | 5678499 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014227 | NA | coding | downstream | 3494 | 5644852 ~ 5655578 (-) |
| AMCG00014215 | NA | coding | downstream | 794754 | 4859257 ~ 4864318 (-) |
| AMCG00014212 | tbl1x,LOC106582098,LOC102307724,LOC101465000,LOC102798223 | coding | downstream | 1053111 | 4588397 ~ 4605961 (-) |
| AMCG00014211 | NA | coding | downstream | 1093128 | 4560163 ~ 4565944 (-) |
| AMCG00014210 | NA | coding | downstream | 1138673 | 4511821 ~ 4520399 (-) |
| AMCG00014226 | NA | coding | upstream | 717 | 5679216 ~ 5698927 (-) |
| AMCG00014231 | NA | coding | upstream | 148260 | 5826759 ~ 5843215 (-) |
| AMCG00014230 | NA | coding | upstream | 167789 | 5846288 ~ 5850922 (-) |
| AMCG00014232 | NA | coding | upstream | 185857 | 5864356 ~ 5866524 (-) |
| AMCG00014233 | LOC107697803 | coding | upstream | 207972 | 5886471 ~ 5891251 (-) |
| G68547 | NA | non-coding | downstream | 71080 | 5587499 ~ 5587992 (-) |
| G68537 | NA | non-coding | downstream | 260837 | 5397828 ~ 5398235 (-) |
| G68535 | NA | non-coding | downstream | 324689 | 5334092 ~ 5334383 (-) |
| G68514 | NA | non-coding | downstream | 772789 | 4885925 ~ 4886283 (-) |
| G68474 | NA | non-coding | downstream | 1010861 | 4647702 ~ 4648211 (-) |
| G68581 | NA | non-coding | upstream | 31319 | 5709818 ~ 5710080 (-) |
| G68590 | NA | non-coding | upstream | 100986 | 5779485 ~ 5782392 (-) |
| G68595 | NA | non-coding | upstream | 147005 | 5825504 ~ 5825929 (-) |
| G68680 | edar,LOC107697794,LOC107757718 | non-coding | upstream | 375612 | 6054111 ~ 6056331 (-) |
| G68722 | NA | non-coding | upstream | 855981 | 6534480 ~ 6534701 (-) |
| AMCG00014181 | ppef1,LOC105893339,LOC108425737,LOC107695075 | other | downstream | 2264318 | 3385757 ~ 3394754 (-) |
| G68088 | NA | other | downstream | 2829928 | 2825562 ~ 2829144 (-) |
| AMCG00014144 | NA | other | downstream | 3005825 | 2641059 ~ 2653247 (-) |
| AMCG00014134 | NA | other | downstream | 3116375 | 2531954 ~ 2542697 (-) |
| AMCG00014119 | NA | other | downstream | 3534119 | 2085941 ~ 2124953 (-) |
| AMCG00014241 | NA | other | upstream | 380990 | 6059489 ~ 6108358 (-) |
| AMCG00014271 | NA | other | upstream | 1699589 | 7378088 ~ 7386984 (-) |
| AMCG00014276 | LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 | other | upstream | 1723653 | 7402152 ~ 7411890 (-) |
| AMCG00014278 | NA | other | upstream | 1735230 | 7413729 ~ 7423291 (-) |
| AMCG00014297 | NA | other | upstream | 2456404 | 8134903 ~ 8139126 (-) |
