AMCG00014237



Basic Information


Item Value
gene id AMCG00014237
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6033437 ~ 6054435 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014237
ATGATGCAGCAGGGAGAATCCAGAAGGTCCCATTTCCTCTCGTTCCTGTTGTCATTGACCGGtcatctctccctcttcctccctctctcgctccctctctcccaggtgTCTACGCTCCCACTCTTGCAGGCCGAGTACTCCAGCTGTGGAGAGAACGAGTTCTACAACCACACGAGTGGCAGCTGCCAGGCCTGTCCGCAGTGTCAGCCCGGCCAGGAGCCCAACCAGAGTTGTGGCTACGGTGTCCGGGACGAGGATTACGACTGTGTGCCGTGTCCGGCCGGGAAGTTCTCCAAGGGCAAGTACGAGATCTGCCGGCGGCACAAAGACTGCGATGCCCTGTACCGGGCCACCGTGCTGACCCCCGGCACCCTGGACAGTGACGCAGAGTGCGGGCCCTGTCTGCCAGGATACTACATCCCCGAGAACGGCCCGCAGAACATCTACGGGATGGTGTGCCACTCGTGCCAGAATGCCCCGCGCAACACCAAGGAGTGTAAGTGTCAGGCTCCTGTCACCACACCCAGGCGCTGGGAGCTCAGTCCTGCCACCACGCTCCTACCTCTGCTTGTGTTCCTTagatgcgtgtgtaTGCGCTCGGCCCCCGGCTCCTCTGGCATTTCCCCGGCAGTGTCCTCCACCAGCACCACCATGTTCCCTCACGCACACAAAGATTTGACGGGGCAGGGGCACCTGGCGACTGCTCTGATCATAGCCATGTCCACCATCTTCATCATGGCCATCGCAATAGTGCTGATCATCATGTTCTACATCCTGAAGGCCAAGCCCAACAGTCAAGCATGTTGCTCTGGTCCCTCAGTGAAGACCGTCGAGGCTCAGACCAACAAGCAAGAAGACAAGAAAGAGGTTCAAGAAAGCGTGGTGATATTCTCAGAGAAAGACGAATTCGACAAGCTCAAACCGACGGCACCGAAGACCGTTAAAAGCGAGAACGACGCATCCTCGGAGAACGAGCAGCTCCTGAGCCGCAGCGTGGACAGCGACGAGGAGGCGGCCCTGGAGAAGCAGGGGGCCACGGACCTGTGCCTGCTGTCGTTGGTGCACCTGACCCGGGAGAAGCCGTCCTCCGTGAACAGCAAGTCCACTGGGATTCAGAGTCGAAGGAAAAAGATTTTGGATCTATACACAAAAGCGTGCAGTGTGGCAGAAGGCCTCAGCCCCACGGAGCTGCCCTTCGACTGCCTGGAGAAGACCAGCCGCATGCTGAGCTCCACCTACAACACGGAGAAGGCGGTGGTGAAGACCTGGCGCCACCTGGCCGAGAGCTTCGGCCTGAAGAGGGACGAGATCGGGGGCATGACAGACGGCATGCAGCTGTTCGACCGCATCAGCACCGCGGGCTACAGCATCCCCGACCTGCTCACCAAGCTGGTGCAGATCGAGAGGCTGGACGCCGTCGAGTCGCTGTGCTCAGACATCTTGGGGGGCGCCGAGGGAGGCCCCCCCACCAGCCCGCCCATCTCGTCTCGCTGCGCCAGCGTCTGA

Function


GO:

id name namespace
GO:0060348 bone development biological_process

KEGG:

id description
K05162 EDAR; tumor necrosis factor receptor superfamily member EDAR

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014237 True 1506 mRNA 0.60 11 6033437 6054435

Neighbor


gene id symbol gene type direction distance location
AMCG00014229 sept10,LOC105911973,LOC107697805,LOC108430022,LOC103039444 coding upstream 154180 5866905 ~ 5879257 (+)
AMCG00014224 NA coding upstream 258676 5755529 ~ 5774761 (+)
AMCG00014225 NA coding upstream 293516 5721897 ~ 5739921 (+)
AMCG00014223 NA coding upstream 389948 5607773 ~ 5643489 (+)
AMCG00014222 NA coding upstream 425683 5595455 ~ 5607754 (+)
AMCG00014243 NA coding downstream 180368 6234803 ~ 6239921 (+)
AMCG00014253 NA coding downstream 677189 6731624 ~ 6732517 (+)
AMCG00014259 NA coding downstream 985319 7039754 ~ 7046875 (+)
AMCG00014260 LOC107688668 coding downstream 995901 7050336 ~ 7054907 (+)
AMCG00014261 NA coding downstream 1018889 7073324 ~ 7073602 (+)
G68635 NA non-coding upstream 20378 6012682 ~ 6013059 (+)
G68623 NA non-coding upstream 77252 5897070 ~ 5956185 (+)
G68589 NA non-coding upstream 251051 5779378 ~ 5782386 (+)
G68559 NA non-coding upstream 329428 5657250 ~ 5704009 (+)
G68538 NA non-coding upstream 581916 5451288 ~ 5451521 (+)
G68637 NA non-coding downstream 100 6054535 ~ 6056347 (+)
G68649 NA non-coding downstream 19282 6073717 ~ 6110306 (+)
G68665 NA non-coding downstream 58221 6112656 ~ 6114964 (+)
G68686 LOC106586545,LOC106582186 non-coding downstream 149743 6204178 ~ 6206576 (+)
G68698 NA non-coding downstream 190467 6244902 ~ 6247049 (+)
G68475 NA other upstream 1381473 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 1901719 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 3323108 2706840 ~ 2710329 (+)
G67896 NA other upstream 3903292 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 4130750 1900220 ~ 1902687 (+)
G68830 NA other downstream 1291760 7346195 ~ 7349467 (+)
G68848 NA other downstream 1359205 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 1410068 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 3948623 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 4093544 10147979 ~ 10151913 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037504 edar coding NC_007120.7 CM002893.2 56103173 ~ 56172757 (+)