AMCG00014247 (arl6,LOC107598745,LOC107654813,LOC105007615,LOC107734576,LOC107567991)


Basic Information

Item Value
gene id AMCG00014247
gene name arl6,LOC107598745,LOC107654813,LOC105007615,LOC107734576,LOC107567991
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6240978 ~ 6247042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014247
ATGAACCCGGTGCACGCCGTGCGGAGACGGCGCTGCGGGGCGCTCTGCAGCCCTCCGGTTCCCCGGATGGAGGCGCTGCAGGGCGGAGTGCAGCTGGCCGGGTGGCTGGGCATTAAGAAGAAAGAGGTGCACGTCCTGTGCCTGGGGCTGGACAACAGCGGCAAGACCACCATCATTAATAAACTGAAGCCGTCCAACGCTCAGACACAAGACATCGTCCCGACCATTGGCTTCAGCATAGAGAAGTTCAAGACCTCCAGTCTGTCTTTCACGGTGTTTGACATGTCTGGTCAAGGGAGGTACAGGAATCTCTGGGAGCATTACTACAAgGAAGGCCAGGCCATCATCTTTGTCATCGACAGTAGCGACAAGTTACGCATGGTGGTGGCCAAAGAGGAGCTCGACACGCTGCTCAACCACCCAGACATCAAACACCGCAGGATGCCGGTCCTATTCTTCGCCAACAAGATGGACCTCAGGGACGCGCTGTCTTCGGTGAAGGTGTCTCAGCTGCTGTGCCTGGAGAACATCAAAGACAAGCCCTGGCACATCTGCGCGAGCGATGCTGTGAAAGGGGAAGGCTTACAGGAAGGAGTGGACTGGCTGCAAGATCAGATCAGAACAATGAAGACGTGAAAGGCTAGCAGGGTGGGGAGCGCTAATCGAGGCCACAAGAAGACCCCCGATGCCTGGAGCGGACCCCTGTACCCCCTCTGTTAAAGACGTCCTGTGTGGAAGCGCTGGCCGTAGAGCCCCCTCTGACGACCCGTGTATATAGTTTGTGTCACATGCTTTCATAATGAGCCGCATGCTACGCCAGGGCGCGGCTGAAGACTCTTCATTCCTGGGCTGCAGGGTGGGGCGTCACCGTTTTATTTAAAggatttattcatgtattattatcattattattatttctctgtgcTTATAGACAAAGTACATTCTTGACTCTAGTCTCTTTTGGCAGGGTTTTAAAAACAGGTCGAGCCTTCATTCTCTGACACACTGCTGTGTCTCGTCATACCAACGCACTTGTGTGTGTCCAGTTTACTTATggaaggtttatttatttctgcatgtACACATGCACGCTCTCTCTGCGCAGCTGCAGTCCTTCCTCCTGGAATCAGTTGTATAAAGGTCCTCTTGGGGGGAATCCAGATGTGTACGTCACTCCTGTGAAATGGCTGAATCGGGACTTTAATTCCCGGAGAGTCCGTAGCGTGGATTAGCCTGATCGATTCCCTCCAATCTCCCATCTCTTGGTAATAAATGCGATGGGGTCACCAGAAACCCCCCTAAGAGTCCATTATTCCCGTCATTTAGTCATCTAAGTCTCGCCGGCCTGTGGGTCCATGTCCCATCCGTGTTGTTGATCTCGGTCAGCGTGTTCAGGTTTGTGCAGCCTTGTGTAGCGACGTCCCCTTTGGGCAAGACCGACAGATACACACTGTATATCGATCTGCTGAACCGAAGAACCACCAGGAACAAATCTGTGTCCTTTTCATCTGAGAAACCTCGACATCGCACAGAACCCCGATGCACACGTAGAGCCGCACAACTGGCCGATCCGTAGACACTCGGACACACAGCTGAGACATCCATTTTCAGAGCGAAACACTAAAAGGTTGAGTCTTGTTTTTATTGGATTTGTTGTTGTAATGTCTTAATCTTGCTGGTTTCGGGCACAGTGGTCATTAAGCTTAGACCTGTACCGATGTCACTTTTGCACTCGGATCATCTGAAATCACAGTTCTGGGTGGGACACTGCTGGGAACAGCTACACAAAAACCACACAACTCCCCTAATATCACAATAACCGAGAGATGggtcttctgtttgttttttccaatggTCACTAAAGCattccagtctgattttaatgtAACTAAATAATTGactttgttttgtaaaggaatgttatattttgttacaaagttttcattttttaagaatgATGTGGAAATTTGgtaaaatagtaataattaaacattcCTTCATGAAATGGCCTGGGGACGGCCTCGGGTCAGTAATGCTCTGATGATTGTAggtatttttgcattaataaagAGTCTCAGTCTAACTTGGTCTCTGCTCTTTCTGTGACTGTAACAGCAGCAGC

Function

symbol description
arl6 Predicted to enable GTP binding activity. Involved in cilium assembly. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pectoral fin development. Predicted to be located in ciliary membrane and cytoskeleton. Predicted to be active in axoneme. Is expressed in adipose tissue; brain; eye; heart; and retina. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 1; Bardet-Biedl syndrome 3; and retinitis pigmentosa 55. Orthologous to human ARL6 (ADP ribosylation factor like GTPase 6).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 6 isoform X3

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032402 melanosome transport biological_process
GO:0007601 visual perception biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0033339 pectoral fin development biological_process
GO:0060170 ciliary membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07951 ARL6, BBS3; ADP-ribosylation factor-like protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014247 True 2122 mRNA 0.49 8 6240978 6247042

Neighbor

gene id symbol gene type direction distance location
AMCG00014249 NA coding downstream 12535 6226701 ~ 6228443 (-)
AMCG00014246 NA coding downstream 18266 6220997 ~ 6222712 (-)
AMCG00014244 LOC106582186,LOC106586545,LOC108440498,LOC108437783 coding downstream 28183 6205928 ~ 6212795 (-)
AMCG00014239 NA coding downstream 77221 6145608 ~ 6163757 (-)
AMCG00014242 LOC106582183,LOC103353988 coding downstream 116632 6109359 ~ 6124346 (-)
AMCG00014245 epha6,LOC108437778,LOC101465476 coding upstream 5329 6252371 ~ 6253881 (-)
AMCG00014248 LOC106936474,LOC106903720,LOC105936159 coding upstream 16908 6263950 ~ 6275500 (-)
AMCG00014251 epha6,LOC108437778 coding upstream 38298 6285340 ~ 6302746 (-)
AMCG00014250 epha6 coding upstream 87473 6334515 ~ 6340409 (-)
AMCG00014252 LOC106586540,LOC106582188,LOC101465476 coding upstream 152426 6399468 ~ 6414836 (-)
G68680 edar,LOC107697794,LOC107757718 non-coding downstream 184647 6054111 ~ 6056331 (-)
G68595 NA non-coding downstream 415049 5825504 ~ 5825929 (-)
G68590 NA non-coding downstream 458586 5779485 ~ 5782392 (-)
G68581 NA non-coding downstream 530898 5709818 ~ 5710080 (-)
G68572 NA non-coding downstream 537051 5657305 ~ 5703927 (-)
G68722 NA non-coding upstream 287438 6534480 ~ 6534701 (-)
G68724 NA non-coding upstream 432983 6680025 ~ 6680288 (-)
G68757 NA non-coding upstream 743561 6990603 ~ 6990867 (-)
G68767 NA non-coding upstream 797083 7044125 ~ 7045812 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding upstream 806889 7053931 ~ 7054306 (-)
AMCG00014241 NA other downstream 132620 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 562479 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 2846224 3385757 ~ 3394754 (-)
G68088 NA other downstream 3411834 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 3587731 2641059 ~ 2653247 (-)
AMCG00014271 NA other upstream 1131046 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 1155110 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 1166687 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 1887861 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 1908890 8155932 ~ 8158590 (-)

Expression


Co-expression Network