AMCG00014248 (LOC106936474,LOC106903720,LOC105936159)


Basic Information

Item Value
gene id AMCG00014248
gene name LOC106936474,LOC106903720,LOC105936159
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6263950 ~ 6275500 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014248
ATGTTATGCCCACGGGTGCCCTGCTCGGAAGGGATCGTCCAGGCAGCATCCCGGTGTCAGTGGTACATCAAAGCCAAGATGAAGTCCGAAGAGAAGAGGGGGACCCAGTTTCAGAACGGACACATCCGCTTCCCGGGGATCAAAACGTACGTGGACCCCGACACCTACGAGGACCCCACACAGGCCGTGCACGAGTTCGCCAAGGAGATCGACCCGTCGCGCATCCGCATCGAGAGGGTGATCGGAGCAGGCGAGTTCGGGGAGGTGTGCAGCGGCCGTCTGCGGACCCCGGGGAAGAGAGAGATCCCGGTGGCCATTAAGACGCTGAAGGGAGGCTACGTGGAGCGACAGCGGAGGGACTTCCTGAGGGAGGCCAGCATCATGGGCCAGTTCGACCACCCCAACATCATCCGGCTGGAGGGCGTGGTCACCAAAAGTAAGCACGCCCCCTGGTGTGAGTCTCGTGTGTGTCAGGGTGCTCTTCCGGGAACGCGGCCGAGTCCTTGGCGGAGACCTTCTCTAACGGCTTTCTCTTCTGTCCTGGCAGGCCGGCCGGTGATGATCGTGGTGGAATACATGGAGAACGGCTCTCTGGACTCCTTCCTCAGGAAGCACGACGGGCACTTCACGGTGATCCAGCTGGTGGGCATGCTGCGGGGCATCGCCTCGGGGATGAAGTACCTCTCGGACATGGGCTACGTCCACCGGGATCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTGGTGTGCAAGGTGTCGGACTTCGGGCTGTCGCGCGTGCTGGAGGACGACCCCGAGGCTGCCTACACGACCACCCTGAAGTGGAACGGGAGTTTGGTGTGCTGTGCCAGTGCTATGATTCTGTGTGGTTCGGTAAAGAATGACAGCCTACCGCTTCCTCTTGGCCGTGTTCAGTGTTATCCGCAATCCCGCATTGCTCGACAGAAAATAAGATGCAACTCTCCTAATCCAGCCAAGACCCCCGTGACCTATTTTCTCTTGGCTGCTGTTGGAGGGATATATTGCCTTTCTGGGCCTGTGTGCCGAAAGAAAGCCATTTTCTGCATGACAGCAAATCTCCACACGCAGGAGGCCCCGGAAAGCTTTACTACAGCAAGATTACGCGTGGAGGCCGCCTGTGGAATCCTGATTTGGCCCTCCACTCGTGTGGGGAGAATCGCCCCTGCGCAGCGCGACAGCGAGTCGGGGATGAGAAAACCCCCGTGCCGGCTCTGA

Function

NR:

description
PREDICTED: ephrin type-A receptor 6-like

GO: NA

KEGG:

id description
K05107 EPHA6, EHK2; Eph receptor A6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014248 True 1239 mRNA 0.60 7 6263950 6275500

Neighbor

gene id symbol gene type direction distance location
AMCG00014245 epha6,LOC108437778,LOC101465476 coding downstream 10069 6252371 ~ 6253881 (-)
AMCG00014247 arl6,LOC107598745,LOC107654813,LOC105007615,LOC107734576,LOC107567991 coding downstream 16908 6240978 ~ 6247042 (-)
AMCG00014249 NA coding downstream 35507 6226701 ~ 6228443 (-)
AMCG00014246 NA coding downstream 41238 6220997 ~ 6222712 (-)
AMCG00014244 LOC106582186,LOC106586545,LOC108440498,LOC108437783 coding downstream 51155 6205928 ~ 6212795 (-)
AMCG00014251 epha6,LOC108437778 coding upstream 9840 6285340 ~ 6302746 (-)
AMCG00014250 epha6 coding upstream 59015 6334515 ~ 6340409 (-)
AMCG00014252 LOC106586540,LOC106582188,LOC101465476 coding upstream 123968 6399468 ~ 6414836 (-)
AMCG00014255 NA coding upstream 434719 6710219 ~ 6717932 (-)
AMCG00014254 arl13b coding upstream 442819 6718319 ~ 6739267 (-)
G68680 edar,LOC107697794,LOC107757718 non-coding downstream 207619 6054111 ~ 6056331 (-)
G68595 NA non-coding downstream 438021 5825504 ~ 5825929 (-)
G68590 NA non-coding downstream 481558 5779485 ~ 5782392 (-)
G68581 NA non-coding downstream 553870 5709818 ~ 5710080 (-)
G68572 NA non-coding downstream 560023 5657305 ~ 5703927 (-)
G68722 NA non-coding upstream 258980 6534480 ~ 6534701 (-)
G68724 NA non-coding upstream 404525 6680025 ~ 6680288 (-)
G68757 NA non-coding upstream 715103 6990603 ~ 6990867 (-)
G68767 NA non-coding upstream 768625 7044125 ~ 7045812 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding upstream 778431 7053931 ~ 7054306 (-)
AMCG00014241 NA other downstream 155592 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 585451 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 2869196 3385757 ~ 3394754 (-)
G68088 NA other downstream 3434806 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 3610703 2641059 ~ 2653247 (-)
AMCG00014271 NA other upstream 1102588 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 1126652 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 1138229 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 1859403 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 1880432 8155932 ~ 8158590 (-)

Expression


Co-expression Network