AMCG00014250 (epha6)


Basic Information

Item Value
gene id AMCG00014250
gene name epha6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6334515 ~ 6340409 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014250
ATGGCGGGTTTCCATAAAGAAGGCTTGTCTTTGTTCTTGCAACGACCTGGATTCTACAAAGCGTTCGCCGGGAACATCAAGTGCTCCAAGTGCCCCCCCCACAGCTTCAGCTACGAGGAGGGCTCCCCGCTCTGCCAGTGCGAGAAGGGCTACTTCCGGGCTGAGAAGGACCCCCCAACCATGGCCTGCACAAggCCCCCTTCACCACCACGGGACGTGGTCTTCAACATCAACGAGACCTCCCTGTTCCTGGAGTGGAGCCCCCCCAGCGACACAGGTGGCAGGAAGGACCTGACATACAACGTCCTGTGCAAGAAGTGCAGCCCGGACCCCCGGCAGTGCGAGCTGTGCGGGGGGGACCTGCGTTTCGTGCCCCGGCCCGTGGGGCTGACCAACGCCTCGGTCACGGTGCTGGACTTCATCGCCCACGCCAACTACACCTTCGAGATCGAGTCACTCAACGGCGTGTCGGAGCTGAGTTCCTTCCCCCGGCCCGTCACGGCGATCACCATCACCACGGACCAGGGTGGTGAGTCAGTGCTTGGATATCGGGGCCGCTGA

Function

symbol description
epha6 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human EPHA6 (EPH receptor A6).

NR:

description
PREDICTED: ephrin type-A receptor 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014250 True 561 mRNA 0.63 3 6334515 6340409

Neighbor

gene id symbol gene type direction distance location
AMCG00014251 epha6,LOC108437778 coding downstream 31769 6285340 ~ 6302746 (-)
AMCG00014248 LOC106936474,LOC106903720,LOC105936159 coding downstream 59015 6263950 ~ 6275500 (-)
AMCG00014245 epha6,LOC108437778,LOC101465476 coding downstream 80634 6252371 ~ 6253881 (-)
AMCG00014247 arl6,LOC107598745,LOC107654813,LOC105007615,LOC107734576,LOC107567991 coding downstream 87473 6240978 ~ 6247042 (-)
AMCG00014249 NA coding downstream 106072 6226701 ~ 6228443 (-)
AMCG00014252 LOC106586540,LOC106582188,LOC101465476 coding upstream 59059 6399468 ~ 6414836 (-)
AMCG00014255 NA coding upstream 369810 6710219 ~ 6717932 (-)
AMCG00014254 arl13b coding upstream 377910 6718319 ~ 6739267 (-)
AMCG00014256 NA coding upstream 412450 6752859 ~ 6755633 (-)
AMCG00014257 epha3,LOC107549902,LOC107676997 coding upstream 473772 6814181 ~ 6860542 (-)
G68680 edar,LOC107697794,LOC107757718 non-coding downstream 278184 6054111 ~ 6056331 (-)
G68595 NA non-coding downstream 508586 5825504 ~ 5825929 (-)
G68590 NA non-coding downstream 552123 5779485 ~ 5782392 (-)
G68581 NA non-coding downstream 624435 5709818 ~ 5710080 (-)
G68572 NA non-coding downstream 630588 5657305 ~ 5703927 (-)
G68722 NA non-coding upstream 194071 6534480 ~ 6534701 (-)
G68724 NA non-coding upstream 339616 6680025 ~ 6680288 (-)
G68757 NA non-coding upstream 650194 6990603 ~ 6990867 (-)
G68767 NA non-coding upstream 703716 7044125 ~ 7045812 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding upstream 713522 7053931 ~ 7054306 (-)
AMCG00014241 NA other downstream 226157 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 656016 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 2939761 3385757 ~ 3394754 (-)
G68088 NA other downstream 3505371 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 3681268 2641059 ~ 2653247 (-)
AMCG00014271 NA other upstream 1037679 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 1061743 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 1073320 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 1794494 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 1815523 8155932 ~ 8158590 (-)

Expression


Co-expression Network