AMCG00014252 (LOC106586540,LOC106582188,LOC101465476)


Basic Information

Item Value
gene id AMCG00014252
gene name LOC106586540,LOC106582188,LOC101465476
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6399468 ~ 6414836 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014252
ATGGTTCTGCCGGGCGATACCCCGAGGAAACCCGATCTTCGGAAAGCACGCAGCTCATCTCTGGCTCCGCGCCCGAACCCCCAGAGCCGCGCCAGAGAGCCCAAGTGGGACGCCATCACCGAGATGGACGAGCACAACCGGCCCATCCACACCTTCCAGGTCTGCCACGTCATGGAGCCCAACCAGAACAACTGGCTGCGGTCCAACTGGATCTCGCGCGAGGCGGCGCAGAAGCTCTACGTGGAGATGCGCTTCACGCTGCGCGACTGCAACAGCATCCCCTGGGTCCTGGGCACCTGCAAGGAGACCTTCAACCTGTACTACATGGAGACGGACGAGTCCCACAGCATCAAGTTCAAGCCCAACCAGTACACCAAGATCGACACCATCGCGGCCGACGAGAGCTTCACCCAGATGGACCTTGGCGACCGCATCCTCAAGCTGAACACGGAGGTGCGCGAGGTGGGGCCCGTCACTAGGAAGGGCTTCTACCTGGCCTTCCAGGACATCGGCGCCTGCATCGCGCTGGTGTCCGTCCGGGTCTACTACAAGAAGTGCCCCTTTACCTTCCGCAACCTGGCCGTGTTCCCCGACACCATCCCGCGTGTCGACTCCTCCTCGCTGGTGGAGGTGCGCGGCGCCTGCGTGAAGAACGCAGAGGAGAGGGACACACCCAAGCTGTACTGCGGGGCGGACGGGGACTGGCTCGTGCCGCTGGGccgctgtgtgtgcagtgtgggcTACGAGGAGATGGACGGCACCTGTCTCGagaaCACAGTGGGGCAGATGATCCTGGTGGGCAAAGAGCAGGCAGATTGCCACATCATTAACTGA

Function

NR:

description
PREDICTED: ephrin type-A receptor 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014252 True 834 mRNA 0.63 3 6399468 6414836

Neighbor

gene id symbol gene type direction distance location
AMCG00014250 epha6 coding downstream 59059 6334515 ~ 6340409 (-)
AMCG00014251 epha6,LOC108437778 coding downstream 96722 6285340 ~ 6302746 (-)
AMCG00014248 LOC106936474,LOC106903720,LOC105936159 coding downstream 123968 6263950 ~ 6275500 (-)
AMCG00014245 epha6,LOC108437778,LOC101465476 coding downstream 145587 6252371 ~ 6253881 (-)
AMCG00014247 arl6,LOC107598745,LOC107654813,LOC105007615,LOC107734576,LOC107567991 coding downstream 152426 6240978 ~ 6247042 (-)
AMCG00014255 NA coding upstream 295383 6710219 ~ 6717932 (-)
AMCG00014254 arl13b coding upstream 303483 6718319 ~ 6739267 (-)
AMCG00014256 NA coding upstream 338023 6752859 ~ 6755633 (-)
AMCG00014257 epha3,LOC107549902,LOC107676997 coding upstream 399345 6814181 ~ 6860542 (-)
AMCG00014258 epha3 coding upstream 472190 6887026 ~ 6888090 (-)
G68680 edar,LOC107697794,LOC107757718 non-coding downstream 343137 6054111 ~ 6056331 (-)
G68595 NA non-coding downstream 573539 5825504 ~ 5825929 (-)
G68590 NA non-coding downstream 617076 5779485 ~ 5782392 (-)
G68581 NA non-coding downstream 689388 5709818 ~ 5710080 (-)
G68572 NA non-coding downstream 695541 5657305 ~ 5703927 (-)
G68722 NA non-coding upstream 119644 6534480 ~ 6534701 (-)
G68724 NA non-coding upstream 265189 6680025 ~ 6680288 (-)
G68757 NA non-coding upstream 575767 6990603 ~ 6990867 (-)
G68767 NA non-coding upstream 629289 7044125 ~ 7045812 (-)
G68773 glrx,LOC100698576,LOC103359009,LOC108424411,LOC103461279 non-coding upstream 639095 7053931 ~ 7054306 (-)
AMCG00014241 NA other downstream 291110 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 720969 5659072 ~ 5678499 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other downstream 3004714 3385757 ~ 3394754 (-)
G68088 NA other downstream 3570324 2825562 ~ 2829144 (-)
AMCG00014144 NA other downstream 3746221 2641059 ~ 2653247 (-)
AMCG00014271 NA other upstream 963252 7378088 ~ 7386984 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other upstream 987316 7402152 ~ 7411890 (-)
AMCG00014278 NA other upstream 998893 7413729 ~ 7423291 (-)
AMCG00014297 NA other upstream 1720067 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 1741096 8155932 ~ 8158590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016701 epha4a coding NC_007113.7 CM002886.2 40067808 ~ 40136024 (-)
grasscarp (Ctenopharyngodon idella) CI01000049_03475307_03572415 EPHA6 coding CI01000049 null 3475307 ~ 3572415 (+)