AMCG00014260 (LOC107688668)


Basic Information

Item Value
gene id AMCG00014260
gene name LOC107688668
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7050336 ~ 7054907 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014260
ATGGACGGGGAGGTGGGCAGAGCGGGGAGCGGGGGGCCGGCGGGGCGGGTGACGGTGTACTCCGTGCCGGGCTGCCCCCACTGCCGGCAGGCCAGTGCACGGCTGCGGGAGCTGGGCCTGCCGCTCTGCGAGGTGGACCTGGACCGGAACGCCGAGCTGCGGCCGCGCGTCCAGGAGCTGACCGGCCACGGCGCCGTGCCACAGATCTTCTTCAACGGCGTGCACGTGGGGGGCAACGAGGACCTGCTAGCGctgGCCCCCGAGGAGCTGCAGAGACTGGTGCGCATGGTGAGGGACAAGCCTGTGCCGCTGGACGTCCTCCCGCTGCCCGGGGAGGAGCCGGAGGAAGGGGAACCCCGGGATGGAGAGTTTGAGTGTGAGAGGGATGATTTTGCCGACATGATTGTGGGGTTCAAGCGCAGTGGGGTGATCGGACGCCACAGACGAGGGCTGAGAGAGTGGCAGCACGCCGTCACTGGGGAGCAGCTGGTCCACTGGCTGCAGAGGGGCCAGGGGCTGGACAGGAGTGAAGCCCTCGAAACCGCAAAGAGTTTAATGGAGAGGAGGTTTTTTAACCCTGTGTCTGGGACGGGGCAGTTTGAAGAGAATAGCACCCTGTACAGATTAGTGGAGCACCCTCGCTTCTCGCTGAATGCCGGGGAGACGGCCGAGTGCAGTCCTGTCATGGCTGCTGAACTCTCCGAAGCCCTGAGGCATCTGATCCTGAAACTGTACGCTGAGCACCTCTCCCCGGACGGCAAGTCTGTGGATTACAAGGCCATGTCCCAGAGCCCGTCCTTCCAGAGGTACTGCGATCTGGCTGTGCAGCTGCAGCGGGTGGAGCTGCACGCTCTGAGCCGCGAGGAGAAGCTGGCCTTCTTCATCAACATCTACAACGTGCTGGTCATCCACGGGCACCTGCGCCTCGGATCCCCGCAGAACGTGTGGCAGCGCTACCGGTTCTTCAACTACGTGAGCTACCTGATCGGCGGCGCCGTGTTCACCCTGCAGGACATCGAGAACGGGGTGCTGCGGGGCAACAGGAAGGGCGTGGCGCAGCTGATGAAGCCCTTCTCCAAGAGTGACCCGCGTCTCCAGGTCGCCCTCCCCAACGCAGAGCCTCTCGTTCACTTTGCCTTGAACTGCGGAGCAAAGGGCTGCCCCCCCATTAAGACCTACACAGCCAAGGACATCGACCGGCAGCTGCGCACGGCGGCTGAGGCCTTCCTGGAGAACGACAGCGCCTGCAGGGTGGACCGGGCGAAGGGAGAGGTGCGGCTCAGCCAGATCTTCAAGTGGTACAAGGTGGACTTCGGGGACACGGACGAGAAGGTGCGTTGCTGTGGCTCGCGCTCGCGGAATAAGAACAGGAAGTGGCTACTGAACTGGATATTAAACCACATGGGGGACTCTCCCAAGAAGTCCAGCCTGGAGGAGGTCTTGAACGCCCCCTGCTACAAAGTGCTCTACATGCCTTACGACTGGTCCCCTAACACTACAGACTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107688668

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014260 True 1506 mRNA 0.63 9 7050336 7054907

Neighbor

gene id symbol gene type direction distance location
AMCG00014259 NA coding upstream 3461 7039754 ~ 7046875 (+)
AMCG00014253 NA coding upstream 317819 6731624 ~ 6732517 (+)
AMCG00014243 NA coding upstream 810415 6234803 ~ 6239921 (+)
AMCG00014237 NA coding upstream 995901 6033437 ~ 6054435 (+)
AMCG00014229 sept10,LOC105911973,LOC107697805,LOC108430022,LOC103039444 coding upstream 1171079 5866905 ~ 5879257 (+)
AMCG00014261 NA coding downstream 18417 7073324 ~ 7073602 (+)
AMCG00014267 pou1f1,LOC107688653,LOC107551978,LOC107661330 coding downstream 174166 7229073 ~ 7237562 (+)
AMCG00014266 NA coding downstream 223215 7278122 ~ 7285235 (+)
AMCG00014273 tomm70 coding downstream 390109 7445016 ~ 7455956 (+)
AMCG00014274 nit2 coding downstream 429155 7484062 ~ 7489351 (+)
G68738 NA non-coding upstream 306225 6743863 ~ 6744111 (+)
G68728 NA non-coding upstream 335515 6713171 ~ 6714821 (+)
G68698 NA non-coding upstream 803287 6244902 ~ 6247049 (+)
G68686 LOC106586545,LOC106582186 non-coding upstream 843760 6204178 ~ 6206576 (+)
G68665 NA non-coding upstream 935372 6112656 ~ 6114964 (+)
G68771 NA non-coding downstream 1800 7056707 ~ 7058319 (+)
G68904 NA non-coding downstream 571081 7625988 ~ 7626404 (+)
G68982 NA non-coding downstream 819620 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 959837 8014744 ~ 8015003 (+)
G69023 NA non-coding downstream 1078381 8133288 ~ 8136210 (+)
G68475 NA other upstream 2398372 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 2918618 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 4340007 2706840 ~ 2710329 (+)
G67896 NA other upstream 4920191 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 5147649 1900220 ~ 1902687 (+)
G68830 NA other downstream 291288 7346195 ~ 7349467 (+)
G68848 NA other downstream 358733 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 409596 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 2948151 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 3093072 10147979 ~ 10151913 (+)

Expression


Co-expression Network