AMCG00014274 (nit2)



Basic Information


Item Value
gene id AMCG00014274
gene name nit2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7484062 ~ 7489351 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014274
CAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGCACCTCCCGGGACGTGACGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGGCGGCCAGCCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGTAGATGTAGATGGCGTAGCTCTCCTTCCTGCGTCCCTTCCGCCCCTTTCCGCCCGTCTTCGCTATCTTGGTGACGGCTTTTTTGGAGCCTTTCTTTGGCACTGGCAGCTTGGCAGGGTCGGGCATTGTTCACatcaaaagtcaaaataaaaccaatatggATCTCTGCTTCCCTTGCGCGATGAGCCCAGGGAGGCGACACTGGCGGTGCGTCGCCTGCTGAAACTGatgcctatttatttatatcgGTATGCAAATGATGGGTTGATGGAATCCGAGGAAGCCTTCTGATTGGCGGGTTGTGCTGTACAGTAGCCAATGAGAGTGATTTGAGTCTTTCTGGCGGATTGTACGAAACTTTCACAGCGGACCTGATGGAGAGCGACTGACCGAAGTCAGCGCTCTaacacacatgcataataattcTTCTTCTTGTGTCCTGAGAGACACCGTCCAGtgcagcagggtctccagccctggtcctgcaggagCACACCACTCTCCCATATTTGTGGGCGGTTGAGAATAAAACTACATGACCCAGAAGGCTTTGCGACCGAATATCATATACTTCCGGCAGAGGCTTGGACGTTCAGTGTCTGCTGTGTCGGGGTATGTCTGCGTTAGGAAAAGCAATGACGAAGTTCCGGCTGGCCCTGGTGCAGCTGCATGTGTCCGCTGTGAAGACGGACAACCTGCGCCGCGCCCGCGCCCTGGTGAAGGAGGCCGCAGGGCAGGGGGCAAAGGTCGTCACGCTGCCGGAGTGCTTCAACTCCCCGTATGGCACGAGCTTCTTCCCCGAGTACGCCGAGCGAATCCCCGGAGAGTCCAGCCAGCTGCTGTCAGAGGCGGCAAAGGAGAGCGGAGTGTACCTGATAGGAGgctCCATCCCTGAGGAGGACGGGGGGAAGCTGTACAATACCTGCCCTGTGTTCGGCCCCGACGGCTCCCTGCTACTCAAACACAGGAAGATCCACCTGTTTGACATCGATGTTCCTGGGAAAATTCGCTTCCAGGAGTCGGAGACGCTCAGCCCAGGAAGCAGCTTCTCTGTGTTCGACACGCCCTTCTGCAAGATCGGCGTGGGGATCTGCTATGACCTGCGCTTCGCAGAGCTGGCCCAGATCTACACCAGGAGCGGCTGCCAGCTGCTGGTGTACCCTGGGGCTTTCAACATGACCACTGGCCCGGCCCACtgggagctgctgcagaggggGAGagCGGTGGATAACCAGGTGTTCGTGGCCACAGCCTCTCCGGCCCGGGATGAGACGGCCTCCTACACTGCCTGGGGTCACAGCACCGTGGTCAACCCCTGggGGGAGGTGATTGCAACGGCAGATGCAGAGGAGACCATCGTGTATGCTGATATCGACCTGCAGTATCTGGCGGAGGTCCGGCAGCAGATCCCCATCCACAGCCAGCGCCGGCACGACCTGTACAGAGTGAGCGCTGTGCCGGAGGACTAGACCCAGCAGGCCAGGCGCAGAGACCACAGGCCCCAGCTCCACGCGGCCCGACTCTCCGGCCCCGCAGCCCCAACTCTCTGATGGAGAGTTTTTTCTGATGCACTTAatttgagtatttttaaattgtgatattcactgaaaataaatgatattaAATATCTACTAAAGAGtcacacaaaatatgaaatcttCTCACCGATGCTAGATGCACTTATGTAATAAAGCTACAAATGATTGGAAGGAAAA

Function


symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

NR:

description
omega-amidase NIT2

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014274 True 1907 mRNA 0.57 10 7484062 7489351

Neighbor


gene id symbol gene type direction distance location
AMCG00014273 tomm70 coding upstream 28106 7445016 ~ 7455956 (+)
AMCG00014266 NA coding upstream 198827 7278122 ~ 7285235 (+)
AMCG00014267 pou1f1,LOC107688653,LOC107551978,LOC107661330 coding upstream 246500 7229073 ~ 7237562 (+)
AMCG00014261 NA coding upstream 410460 7073324 ~ 7073602 (+)
AMCG00014260 LOC107688668 coding upstream 429155 7050336 ~ 7054907 (+)
AMCG00014281 lancl3 coding downstream 148470 7637821 ~ 7642535 (+)
AMCG00014282 xk coding downstream 156067 7645418 ~ 7653546 (+)
AMCG00014283 NA coding downstream 170117 7659468 ~ 7664529 (+)
AMCG00014285 NA coding downstream 224038 7713389 ~ 7729891 (+)
AMCG00014288 NA coding downstream 294378 7783729 ~ 7795382 (+)
G68771 NA non-coding upstream 425743 7056707 ~ 7058319 (+)
G68738 NA non-coding upstream 739951 6743863 ~ 6744111 (+)
G68728 NA non-coding upstream 769241 6713171 ~ 6714821 (+)
G68698 NA non-coding upstream 1237013 6244902 ~ 6247049 (+)
G68686 LOC106586545,LOC106582186 non-coding upstream 1277486 6204178 ~ 6206576 (+)
G68904 NA non-coding downstream 136637 7625988 ~ 7626404 (+)
G68982 NA non-coding downstream 385176 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 525393 8014744 ~ 8015003 (+)
G69023 NA non-coding downstream 643937 8133288 ~ 8136210 (+)
G69206 NA non-coding downstream 1244972 8734323 ~ 8735939 (+)
AMCG00014272 tbc1d23 other upstream 1502 7464503 ~ 7482560 (+)
G68848 NA other upstream 67468 7413640 ~ 7416594 (+)
G68830 NA other upstream 134595 7346195 ~ 7349467 (+)
G68475 NA other upstream 2832098 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 3352344 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 2513707 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 2658628 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 5756958 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 6165887 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 6700213 14189564 ~ 14205014 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034477 zgc:112234 coding NC_007118.7 CM002891.2 6465468 ~ 6466119 (-)