AMCG00014285


Basic Information

Item Value
gene id AMCG00014285
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7713389 ~ 7729891 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014285
GCACTTTTGCTGGGGTGACACAGGCGGACACGAAGGGGCTGCCTCTTTCCAGTCAAtcatttagttacattttgtgtttattctagTTGCTACACCGAATTAATGGAGAGACGTCCCCGGGGGGATTCTGAGAGACGGGGAGGGAGACAAGGGATGCCCAGCCACAGTGTGAGCGCAGTGACAGAGACCAGCACCAAAGACAGGATGGATCTTTATTGACTGGGACACAACTGACCACTGTAAGCCAATGTTATCACCAAAGAACACACGGCGGCATACCTTATCTACCTGGGAGGATATGTGTGACAATCTACACTGACAGCTCTCCCGCCCCTCCTGGTTTGCTCTTTTGCTCCTTCTTGCCAGCACTGACTCTGTCCTGCCCTGTCTGTGGATTAACGAGTAAAGGAGCATGGCAAAAACACCAGACATCATGAACCTCTCGTTCCTACTGGACCACGAGAGAGAGATGATTCTCCGAGTTCTTCAGAAGGATGAGAAGCTAAGGAAGTTGGAAGAGAAGAGGATAAGGAAACTGAAGAATGAGTTGCTGGAGATCCGCAGAAAGGGCTCCCGGAAGCACCAGGAGCCGAGCGACAGGATGTGCGTTCGCTGCCAGAAGACCCTGGGCCTGATCTTCGACCGCGGGGAGCTGTGCGAGGAGTGCAAGGAGCGCGTGTGCAGCGAGTGCCGCGTAGTGCTGCCCAAGAACAAGTGGAAATGCGCCGTCTGCAACAAGATCTCGCAGCTGAAGGTGGTGACCGGGGAGTGGTTCTTCGAGGAGCGATCCAAACGGTTCTCAGAAGGGAATGTGCTGAGCTGTGATGTCGTCAAGCAGTCCATCATCAGCAGTCCACCAGCAGACAGTAAGACTGACCAGAGAAAACAGCAGGCCGCCCAGGCAGCAGCAGAAAGACCAGACACCCCAATGTCTGGCAGGAGTGCCATCAGGAACATGCTGGATGGACCAGGGAAGAAAGGGATTAGGCAGGATAAGAGAGGCATTCGACCGCTGCTCAAAGGTGAGAACGCTGCAGATTCTCGGCCCGAAGACTCCAGGAGTATAGGCTCGGCATCAGACCTGGACGCCTACAGTGTCCGCAGTGGCCGATCTACCCCCCGCTCCAACAGAGGCAGTAATATTGCTCTGGAGTCATCAGGGATGCCGACAGTTCCCAACAACCTCCGCTCTAACACCCCCGGCAGATCCCCGACGCCCAGTCAACGCAGCGCGGGCTCCGGGAACAGCAGGAGGGCGGACGGTGCTGAGAGCGTGGCGAGTTTCCGTGCCAGTGAAAGCGTGCACGATGACATGGCCCATCAGAATTTCAAGAAGACATCTGGGACTCCTTCGATTGCAATTTCTCGAGCTTCTCTCTCATCAGATCGCAGCCGCTCGGAGGTGGACCTGAGTGGCCCATGTGCCGGGTTTAACGAGGAGATGCTGAGCCTGCGGTGCCGGTCGGTGCCGGGAGAGCTGAACGATGCGTTGATGGGGACTgaagaggaaggggaggaggaCATTGACGAGCTGATGTCCGCACACAACTTCTCCACCCACCGGAACATGAAAAGCGCTTTGTCTGTGGCTTCGGACAGGAAGTGGAGTTATCTAAACGTTCCCGACTCTGACGCTGAAACTAGCAGTCTGAACAGCATGATGAGCGTGTACAGCGAGTCGGGGGACTACGGGCACGCCAACGTTAGCGGCGAGATCCTCCTCGGCATCAGCTACAGCTACAAGACCGGCGCTCTCAACATCCTGGTCAAAGAGTGTCGCCACCTGGCCATCGGCGACGAGAAGAAGCAGAGAACAGACCCCTATGTGAAGACATACCTCCTACCAGACAAATCTCGCCAGAGCAAGAGGAAAACGAGCATAAAATCCAACACAACTAACCCGGCTTACAATGAAACATTAAAGTATGTGATCAGTCACTCGCAGCTGGAGACGCGCACCCTGCAGCTGTCTGTGTGGCACAATGACAGATTTGGACACAACAGCTTCCTGGGTGAGGTGGAAGTTCCCTTTGATTCATGGGAGTTTGAGAACCAGACAGAGGAGTGGTTTTCGCTGCAGCCCAAGATGGACGCGGGTGTCGATCCAGTCCTGCAGTACAAGGGGGAGCTGTCCATAGTGCTGCGCTATATCCCACCAGAGAAAAACCTCATGCTGCCTCTGGATCAGTTTCAAGCTAAGAAAAGTTTTCtgaaagggaagaaaacaaatacccAGCTGCCCAAAGGCGGAATAGTGGAGTTGGTTATAAAAGAGGCCAAAAATTTAACCGCAGTGAAATCAGGCGGCACGTCAGACACATTTGTTAAGGGGTACCTACTTCCAGACAACAGCAAATCTTCAAAGCACAAAACCCCGGTGGTGAAGAAGAGTGTGAACCCGCAGTGGAACCACACGTTTAGCTACAGCGGCCTGCAGCCCAGCGACCTGCAAAACGTCTGTCTGGAGCTCACCGTGTGGGACAAGGAGTCGCTGTCCAGCAACGTGTTCCTGGGGGGCGTCCGTCTCGGCCTGGGGAACGGTCTGAGCTATGGGAATGAAGTGGATTGGATGGACTCGCAAGGGGAGGAGCAACGGGTCTGGCGGCGAATGATTGACAACCCAGAAGCCCCTCAGGAGAGCACACTGATGCTGAGGTCCACGATGGGGAAACGCACGACCTGAGCAGACTAGGAAGATACAAACTGTTTTCAGCTCTCCGTTCCCTCCTGCAACACAAGTTGGATGGAGCCCAGCAGACCTATCCCATGCAAAAAGCCTTGGGTTGTACTGTTCAGGacaatgtactgtattatgCCCTATAAATGCATAACCTGCTCTAACGAAGaccaaacattaaacaaaagacGGCGCTACAGAATAAGCTGGAACAGGACCAGCTGTTCTGACTATGCACACTAGGTGGactttcaattaaatgttgttGAGATTGTCTAATGTTGTTCAGAAAGGTCTTGGAATGATTAAGAAAGAGTCTAATTTGTGCAAACAGGACATCGTTCGTCCTTTAGGTGTTTCAGTTTGACACAACATATGTGGTCAGGATGTTTTAGTGGGAGCCCGTTCTTGGGATGTACCTCTGGTGCTTCAGCTGAACTGACCCTGGAAACacgcccccccaccctgcctcGTAACAGCACATTCACAGCGACAGATTCAAGATCATCAGTAAGCCCTGTTCTCTAGAATGGTGGTATAGttacaaagaaatgaaaaggagGATGCTCTCTAAAGGTGGACTTGGCTACTTTTAACTTTCAtctgtaataaatattttacgTCCACATGAAAGAGTTCATAAAATTTCATAAGGAAGCACACAATCATGCTATTTGctcatttgaaaaatgtacattccaaacacacaaataccTGGTTTAATATTCATTAGTCAGCTATGCCAGCTTTGTGCAGCCAGAAGCATTTCAGAATGCATCGtatggtttgtttattctgGAAAGTTTAGCAACCAATTCAGACACCTGGTTTAAATGTTCTCTCAGCGAGGCATTTGGACAAACCAACCTTGCTTTCCAGCCCAGACGTcttgtggaaatgtatttgctgGTCACGTCTGTGAAAAAAGGAGCCCAGCTGCACAAGTCAGAGCTTCTACAAAACATCTGATTGATCATCTGAAAAGACATGCACTAAAGATGTGGATATGTGAGGGCCCAGAGGGTTTTGCAGTAACTGCAGCGACTTCTCCAGGTGCATATTTTCTGTACAATATGTGGATAACATTTACTGTGCACTTATCTCATCAGTGAGAGATTCACAGAGAGATCTCCAGTGAAATGGAAAGGCAGAAGAAAGCACAATTACGATGTGTACTCACTATAAAGGTTTCCTGTTTCTCCACAGTAGGCATTAGACAGGTTGGAGTTTGCCCTTTTGCAGCAGTCGATCTTGGCaattattgtaatgcatttactAGGCATAATACTACATTTTCCCCTCCTTCTAAATCATCcaagttatatttttgtaatagaGCTACATTTTTCATAACCAATTGTTACGTGACTGTGAATCTTGATAACCCGGCTGTCCTTAGAGACTGAAAAGGGAAATTGCTTTGTTGTAATGTTAACTGTAAGCATTTTGATATATGTtgaacaaatgtttttgatttcaaGAAGCACATATTAACTGTAGACAcaatttgattgatttgaaaaTGCGGTCAGCTTTCCTGGAAATGAGTGGTAATATCAAGCCAGACAGTGCTAACCACTTTCTATTACTTTGCATTTGTCTACCTTCAACCTTGTTTCAGTGACAAATCTTTACAGTTGTTCATTTCCTATCTGCTATGTATTTGTCCTCACCtatttttctgctttctggCAAAACAATAGGTGTTGCTGTTAACCAGTTTACCTGCATCTGTTACTCACTATATCCCTGTCTCTGTACCTCCGTCTCTTTGTAAGATTAAAGGAAATGCTTtggttataatatatattttctgtgttgtcaTATTAAAAGTGGAATATGTTTATTGGGG

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014285 True 4529 mRNA 0.49 17 7713389 7729891

Neighbor

gene id symbol gene type direction distance location
AMCG00014283 NA coding upstream 48860 7659468 ~ 7664529 (+)
AMCG00014282 xk coding upstream 59843 7645418 ~ 7653546 (+)
AMCG00014281 lancl3 coding upstream 70854 7637821 ~ 7642535 (+)
AMCG00014274 nit2 coding upstream 224038 7484062 ~ 7489351 (+)
AMCG00014273 tomm70 coding upstream 257433 7445016 ~ 7455956 (+)
AMCG00014288 NA coding downstream 53838 7783729 ~ 7795382 (+)
AMCG00014289 tspan7,tspan7b,LOC107704418,LOC107745974,LOC107593043,LOC107586946 coding downstream 115665 7845556 ~ 7855351 (+)
AMCG00014290 NA coding downstream 270199 8000090 ~ 8003278 (+)
AMCG00014292 NA coding downstream 390484 8120375 ~ 8127095 (+)
AMCG00014294 NA coding downstream 398313 8128204 ~ 8131793 (+)
G68904 NA non-coding upstream 86985 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 655070 7056707 ~ 7058319 (+)
G68738 NA non-coding upstream 969278 6743863 ~ 6744111 (+)
G68728 NA non-coding upstream 998568 6713171 ~ 6714821 (+)
G68698 NA non-coding upstream 1466340 6244902 ~ 6247049 (+)
G68982 NA non-coding downstream 144636 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 284853 8014744 ~ 8015003 (+)
G69023 NA non-coding downstream 403397 8133288 ~ 8136210 (+)
G69206 NA non-coding downstream 1004432 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 1160695 8890586 ~ 8890834 (+)
AMCG00014272 tbc1d23 other upstream 230829 7464503 ~ 7482560 (+)
G68848 NA other upstream 296795 7413640 ~ 7416594 (+)
G68830 NA other upstream 363922 7346195 ~ 7349467 (+)
G68475 NA other upstream 3061425 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 3581671 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 2273167 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 2418088 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 5516418 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5925347 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 6459673 14189564 ~ 14205014 (+)

Expression


Co-expression Network