AMCG00014286


Basic Information

Item Value
gene id AMCG00014286
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7752906 ~ 7783002 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014286
GGAAGATGATGGCAGGGGAGGCGGAGGACGAGATCCCTGATAATGTCCCCAGCAAATTCTGGTTGAAAAATGACAAGGCTCTCCAGATCTCCTGCGGGGATGAACATACAGCGCTTATAACAGACAATGGGAAGCTGTACATGTTTGGCAGCAATAACTGGGGCCAGCTGGGTCTGGGAACAAAGGACACTGTGCACAAACCCACTTGTGTGAAAGCTTTAAAGTCTGAAAAGGTGAGGCTTGCGGCATGTGGGAGAAACCACACACTCGTATACACAGGGCAAGGGAACATGTATGCTGCGGGGGGCAATAACGAAGGCCAGCTGGGCCTCGGTGACTGTGAGGAGCGGAGCACTTTCCACCGGTTAGACTTCTTCAACAGCGACAGTCGGATCAAGATGCTGGCAGCAGGCTCCAACGTCTCGGCCGCTCTGACTGAGGATGGCCAGCTTTTCATGTGGGGGGACAACTCTGAAGGTCAGATCGGGCTGGCCAAAGAGAACAGCGTGTCCGTTCCTCGGGAAGTGAAAGTGGGGAAGCCGGTTGCCGCGATGTCCTGTGGATACTATCACTCTGCGCTTGTGACTGTGGATGGGGAGCTGTTCATGTTCGGGGAGTCCGACAACGGGAAGCTGGGGCTGCCTCCCAAGCAGATGACCAACACCCGTGTCCCGCAGCCAGTGCGGGGCATCCCGGGGAGGGTGACCCAGGTGGCTTGTGGGGGTGGACACACAGTCGCACTTACAGAGGATGACCTGTATTCATTTGGGCTGGGTCAGTTTGGACAGCTGGGACACGGGACGTTTATTTTTGAGGCTTCTCTCCCCAAGGCCGTCGAGCACTTCAGAAAGAGGAAAGTCATCCATATAGCATGTGGGGAGAACCACACGGCTGTGATAACAGACAATGGCCTTCTGTATACATTTGGAGATGGGCGACACGGAAAGCTGGGTCACGGGGAGGAGAATTTTACCAACCAATTCAAGCCGACCCTGTGCTCCCGGTTTCTGAAGTACACAGTGCAGTCTgtgaTGTGTGGAGGATGTCACATGCTGGTCCTGGCTGTCCCTCGGCCCAAGGGCTCTGGTGACATCATCCTTCAAGAGGATGACATCACTGAGAACTATCTGGAGAAATCTTACACTGAGCTGTTGGGGGACTCCTCCGTTGCTGGCTCGCTGAGGAGGACACTGTCGGCTCGTGTCAGGCGCAGAGAAAGGGAGAGTTCTCCAGAGCAGTTTGGGCTGATGTTGAGGACGCTGCCCCCACTGAGAGCGGGATTCCTCAACTCCTCTTTGCCCGTCCCCAGCATGTCTGTGCCTGCTAGACTGCCTGGCATGGACCTGCCTGATGCCAAGCTACCCAACGGACTCCACAGCCTAGCGGCTCCAACAACGGATAAGGAATCGAATGGGGCAGATGAAAAGGCTTGCAGGGTCGAAGACTTGGATGATAATAACAGTGAGAAGGATCTTGGAGACACCACTGACCTGCTAAACATGACCCATGTAATGACGATGAATCCCAGTGACAAGACATTGACATTATCACCAGTTCTCAAGGACAAGGAAGTGGATCACAGTACTGCAGAGGAgagtgaggaagaggaagaggaagatgaggaggaggaggaggaggaggaagaggaaaaggaaaagtctGTTGAGAAGCCCCAGCCTGAGTCAGCGACAGGGGAAGGCCTGTCTCGAGAGCGATCACCGAAGGACTCTGGAATTGCAACGGTAGAGACTGTACCAGATGGCGTGCAAAAAGTTTCTGAAGTGTCGGGAAATCCAAAAATTCAGGAGGAAACTAATGCACAAGGTGACGGAGACCGCGGATCAAAAGAGGATTTGAAACAAAAGGGCATTTTTGGGACAAACAGAAAGATGTCTCTTTTCAAGCGACTGTCGAGCGAATCCAAGAAGCCAGAgaggaaagaagaaaggaaacgAGACGGCGTCCAGGAAAACGAGCCCCCCGTCCCAAATCCCAGCATGCACCCTGGCCACGAGGAGCCCAGCGACCTGAACAAGAATAACACCAGCGAGATCAGCCGGAGCCTCACCCTTCCCCAGCAGCGGGGGCCACAGAAGAGAGAGGGCCCCAGTGACAGGAGGTCCCACTCCTCCACATGCGCCCTGCTGTGATTGCCCACAGGTTTAGTACACCTGCTTCACTGTGCCTTGGAAGACGTGCGTTTGTGAAGGCTTTAAACTAGCAATAGTAAACGCATCCTGCAGTTTACTCTCTTTAATAAAGTGTGGGGCGACTTTTGAGTTGCTCCGTCTATTCTACCGCTTATAACTCAAAACGCTGCAACACATATGTTCGTAGAGCTACGTGTGCCTGCACTGAACTCCCACGTTTCTCCACCGAGGTTCTTGATTGCTGTAGAGCAGTTGTGTGGTCTTGGGGAGGAAcgcaaaataacacatttaaaagctgACAAACCAAAGGTCAAGGATTGCAACATAGCGTAAGTGCTGTTCCCCTAGCGGCAGATCTGTGGACGCGTTTATCATGACCTGCTGCGTTTGCACACTTAATTCTCCCGATATATTTGTTACAGTTTGGGAGTGAACTTGTAAGAGCTGGAACATATCGAGTAACCTAATCGTTAACTTGCATCTTCAACCCATTAAGGAATGTGACATTTGGCTCTGTACTTACACACTTTTACTTTAATCTataattaagtttatttaaGAGTAGGTTACCCCTTTTTATGTCTTTAAACTGAGGTATGTTACATACAGTAATAAATATCCTCTGACAACGTAATTGAGGAACCAGGGTGGGGGGATTTGGCGCTTTGAGGAGACGTTTCCAGAGTTTGTTGTAACTTCTCTTTCACAACAACGTGGATTAGAGGGAGAGCATTCGAGCGAATTGCCCCTTGAGAAAACGCACTCAGGAAAGCATTAACGTGAGCACATTGTCCAGAATCAGCTGCTCGATTAATGTCATGCAGACTGTTATTCCTTCTGTCAAGTCCAAGTGTGGAAAGGGGGGCTTAGTGCTGTTACGTAAACGCAAAGAAAGCAACAATACCGCTGTGTTCTCTGATGGACACATTGGCTTAGAGTTTGAACTGGgatgaaaataatgatttcaaacTGCCCCCTCTTTTGTGGTTTGGATTTACAGACCACGTCATAGTGTACACTGCAATTCTTAATTAAGTACCCCTGTTCCCACCTATTTACATTATGGGAGGTGATTGTAATTTATAGATTtgattacacttttaaaatcgATGTAAAGCTTTACATTACTACATTAGAATGATATATTATTGAGGAAAAACACTAGAaagattatttacattttaacgAGTGCCCCATGATGGAAACTGGCCCTAGAACTGCACACACTGCTGACAGTTTTCAGCTTTCTTTTATTTCGAAGATGTGGCTTCAGACGCACTGTACTTCTGGGGGTTGTTTCAATGTTTGTAGACATTTGTGCCATAGGCATTCTCGAATAGTATTGTATGCTTCGTCACTTTCCAGGATCCAGACCACTACAGAAGAACGTGttcattcagtttattttctttttgtttcaggGTACAAAGTCAAAAGCACCCCTGTTTCTCAAAGTCAAcaattgtgatcacagttttttttaatgtaactgtggattcagtgtttttatatatatatatatatattcataatataacTCACATCAACATGACAGAAATGGTCTCCGTTTTGGAACGCTGTCTTCATccgtcatttttattttatttatctttttttttttttttttaccgaaCTACCAAGCCATCGCAAAGATGTGCTGTAAGTTTATAGACATAAATGGTCGAAtacttatttttacaaaaacaccTACTATTCTTCAACTTTTCtacactaaaatgtttttcttgtcctgtacttaatacatatatgtgtgtgtgtgtgtgtgcgcgcacgTGTGCCTTTTGGTGATTTTTctataattaaacatgtattgatgtggaaaaaagtaatatacagGTGAGAATTGTTGCagttgtgaaaatgtacatatttgtcaatgtaacatatatttatttatatacaatttaaataatgtaagagCACAAACGgcactttaaatgtgtatattgtaatCTGTTGCAGTGAAATGTCTGTTTATGACACATTCTCTGTGTGGCCTTTATAGGGCATCATATTTTGCATGTCTCCTTTTTTCTCATacctaaatgtgaatgttttggAATGTGTCCAATTGTTTGAACAGTAAAAGTAAACatatttg

Function

GO: NA

KEGG:

id description
K19607 RPGR; X-linked retinitis pigmentosa GTPase regulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014286 True 4272 mRNA 0.46 17 7752906 7783002

Neighbor

gene id symbol gene type direction distance location
AMCG00014287 NA coding downstream 1041 7731014 ~ 7751865 (-)
AMCG00014284 NA coding downstream 77648 7668553 ~ 7675258 (-)
AMCG00014280 NA coding downstream 172806 7569311 ~ 7580100 (-)
AMCG00014275 NA coding downstream 316800 7426221 ~ 7436106 (-)
AMCG00014279 NA coding downstream 327230 7425128 ~ 7425676 (-)
AMCG00014291 LOC107586940 coding upstream 237983 8020985 ~ 8060018 (-)
AMCG00014296 NA coding upstream 359187 8142189 ~ 8147008 (-)
AMCG00014295 NA coding upstream 365385 8148387 ~ 8155403 (-)
AMCG00014300 LOC107585190 coding upstream 383240 8166242 ~ 8186240 (-)
AMCG00014301 rp2,LOC107753404,LOC107711097,LOC107685300 coding upstream 406021 8189023 ~ 8197625 (-)
G68905 NA non-coding downstream 126531 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 287244 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 293017 7455978 ~ 7459889 (-)
G68867 NA non-coding downstream 311734 7440500 ~ 7441172 (-)
G68829 NA non-coding downstream 412351 7340351 ~ 7340555 (-)
G68981 NA non-coding upstream 91151 7874153 ~ 7874358 (-)
G69086 NA non-coding upstream 443492 8226494 ~ 8250561 (-)
G69233 NA non-coding upstream 1107554 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 1215424 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1566786 9349788 ~ 9355238 (-)
AMCG00014278 NA other downstream 329615 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 341016 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 365922 7378088 ~ 7386984 (-)
AMCG00014241 NA other downstream 1644548 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 2074407 5659072 ~ 5678499 (-)
AMCG00014297 NA other upstream 351901 8134903 ~ 8139126 (-)
AMCG00014298 NA other upstream 372930 8155932 ~ 8158590 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 600283 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1522237 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 2218132 10001134 ~ 10017751 (-)

Expression


Co-expression Network