AMCG00014288


Basic Information

Item Value
gene id AMCG00014288
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7783729 ~ 7795382 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014288
TGGGAACTCATGTATTATCACCTAAGATGGCACACTAAATATTACGATCTGCTGATTGATGCATGTGCCACAGTGTCAGACCCCTCCCATCCCAGCACAAGTTTTGCAGCTGTTCAGCGCTACAGCTGAGGTTGAATAGCCTACACCTAAACCTGTCAAAAAGGCAGAATTGTTGCTAGGATCGAGAAATTACAAGtctcttttcattttagttCCGCGCTATAGAAGCAGGGAAGATTAATTGTAACTTGACAGAACCGCCATGTTTCGTTTCAGCAACACTTTAGTTCGTGCTCTGAAGAGTGTGCAATGCACTGCTGTGCGGGATTTGCGTGTTGGAGGGGTGGCTTTAGGTGCTGTGAATTTGAAGGGTCGCAATTTCATAACCCTAAAGGACTTTGATTCGGAGGAGATAAAACATCTTCTGTGGACATCAGCAGActtaaaacacagaattaaaaaggaagGACAGAATCTTCCTTTGCTTCATGGCAAGTCCATCGCCATGATCTTTGAGATGAGGAGCACCAGGACTCGGATGTCTACAGAAACAGGGTTTGCGCTGTTAGGAGGGCATCCCTGCTTCCTCACGTCTCAGGACATTCACCTGGGGACCAACGAGAACACCACTGACACTGCCCGGGTCCTCTCTGGACTCACAGACCTGATCCTCGCCCGGGTCAGCAGACACTCAACCATCGAAGAGCTATCCAAGGAGGCCTCTGTACCAGTCATCAACGGGATGTCCAACTTCAACCACCCCATTCAGATACTGGCAGACTTCCTCACTCTGCAGGAGCACTATGGGTATTTGAATGGCCTGACGTTGACGTGGATCGGTGATGGGAACAATATACTCCACTCCTTCATGTTGACAGCAGCCAAACTGGGGGTCCATCTCAATATCGCAACACCAAAGGGATATGAGCCTGCAGCCGGTGTGATTCGAGAGGCGGAAAAATTATCCAAAGAGCATGGGACCAAGTTGCTCCTGACTAACGACCCGTTGGAAGCGGCTCGTGGAAGTAACGTGTTGGTGACGGACACGTGGATAAGCatggggaaggaggaggagaggaaccAAAGGCTGAAGGATTTCCATGGTTACCAAATCACCATGCAGACCGGACGCTTGGCGGCCCCTGACTGGACCTTCCTGCACTGCCTGCCCCGCAAACCACAGGAGGTGGACGACCAGGTCTTCTACTCCCCCCACTCCCTGGTTTTCCCAGAGGCTGAAAACAGGAAGTGGTCTATCATGGGCCTGATGGTGTCTCTGCTGACCGATTATACTCCCCAGATACCAAAGCCCAGGTTCTGATCCAGTGGCCCATGGGAATGTACATTTCttctaaaacattatttattcttaatatgCAGTAACggaagaaatgaaataaatggaGGGATACTGTCTTACATGAGTTTGTCAGTGAAAATTGTAAGAATACATCTTTTCACAAAGATATTtatgcttttgtcttttgtacAGTAATTTAGGAAGTGCACAtccttaaaatgtgtatatttaag

Function

GO: NA

KEGG:

id description
K00611 OTC, argF, argI; ornithine carbamoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014288 True 1533 mRNA 0.48 10 7783729 7795382

Neighbor

gene id symbol gene type direction distance location
AMCG00014285 NA coding upstream 53838 7713389 ~ 7729891 (+)
AMCG00014283 NA coding upstream 119200 7659468 ~ 7664529 (+)
AMCG00014282 xk coding upstream 130183 7645418 ~ 7653546 (+)
AMCG00014281 lancl3 coding upstream 141194 7637821 ~ 7642535 (+)
AMCG00014274 nit2 coding upstream 294378 7484062 ~ 7489351 (+)
AMCG00014289 tspan7,tspan7b,LOC107704418,LOC107745974,LOC107593043,LOC107586946 coding downstream 50174 7845556 ~ 7855351 (+)
AMCG00014290 NA coding downstream 204708 8000090 ~ 8003278 (+)
AMCG00014292 NA coding downstream 324993 8120375 ~ 8127095 (+)
AMCG00014294 NA coding downstream 332822 8128204 ~ 8131793 (+)
AMCG00014293 NA coding downstream 365026 8160408 ~ 8161280 (+)
G68904 NA non-coding upstream 157325 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 725410 7056707 ~ 7058319 (+)
G68738 NA non-coding upstream 1039618 6743863 ~ 6744111 (+)
G68728 NA non-coding upstream 1068908 6713171 ~ 6714821 (+)
G68698 NA non-coding upstream 1536680 6244902 ~ 6247049 (+)
G68982 NA non-coding downstream 79145 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 219362 8014744 ~ 8015003 (+)
G69023 NA non-coding downstream 337906 8133288 ~ 8136210 (+)
G69206 NA non-coding downstream 938941 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 1095204 8890586 ~ 8890834 (+)
AMCG00014272 tbc1d23 other upstream 301169 7464503 ~ 7482560 (+)
G68848 NA other upstream 367135 7413640 ~ 7416594 (+)
G68830 NA other upstream 434262 7346195 ~ 7349467 (+)
G68475 NA other upstream 3131765 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 3652011 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 2207676 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 2352597 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 5450927 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5859856 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 6394182 14189564 ~ 14205014 (+)

Expression


Co-expression Network