AMCG00014297


Basic Information

Item Value
gene id AMCG00014297
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8134903 ~ 8139126 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014297
ATGGCATCTCCTGGAAGCGGCAAGTATGAGGACTGGATGTCTCAGCTGCCTGAACAACTCTGGGACATGGCTCTGTACACCCTCGCCATCCCAGGAAGTCATGATGCTTTGAGTTACTGTTTGGATATGGAGTCTCCCCTGATCAGGTCTGAATCTGCAGTATTGAAGAGCATGGACAAGGTCTTCCCATGCATCACCCGGCCAGTTATTTATAAATGGGCAACAACGCAGGAGAAGAACATTGTGGAACAGCTGACAGAAGGGATTCGCTATTTCGACCTGAGAATTGCTCACAAACCACAGGACTCTTCCGATGATCTGTACTACACTCACGTGGTCTACACCATTCGGACAGTCAGGCCCACTGAACCAAACACACTGGCCATATCAGCACTGAAAGAGCACGGCTTGGATGATCTGAGAAGCCGAATTGAAGAAGCCATCCTGAAAACCACGGGGAAGAAAATTCTGACAATTAAGGTGGATCTCAACAGCGCTCAGTTAAGCTGGCTGTACAAGGAGGCCACGGTGCAGGAGGTGGTGGTTCTGCCAGAAGAAGGAGCCGCTGACGTCAAGGTCATTATGAGCAATGCATCGTGGGGGCGATACAGGAAGCTATTCCAGTACTAG
>TU86291
caaaccagaggagctttgtGTGGTTTTGCTTGATTCATTTTAAGCAAACATAGGATCTAATGCTACAAATGAAAAGTACAGCCTTCTGTATGTGTGCttaaaattagtttgtttttctgcttggGTTTCAGTTATCAGCCCACTGAACCAAACACACTGGCCATATCAGCACTGAAAGAGCACGGCTTGGATGATCTGAGAAGCCGAATTGAAGAAGCCATCCTGAAAACCACGGGGAAGAAAATTCTGACAATTAAGGTGGATCTCAACAGCGCTCAGTTAAGCTGGCTGTACAAGGAGGCCACGGTGCAGGAGGTGGTGGTTCTGCCAGAAGAAGGAGCCGCTGACGTCAAGGTCATTATGAGCAATGCATCGTGGGGGCGATACAGGAAGCTATTCCAGTACTAGCAGCTCTGGCATCGACTAGTAACCCAGAATCCCTGTGTTGAAGCCTcatgttaattggatgattcATCGGCACACTTGTCAACATCAGTGTGATCAGAATTcttccacatttatttatttttcatgcattaagtgtttttgtttttttacccacATTCAGGGACTTTGTGAAATACTGGTTACGTTTCATTGTGCTGTAACCTTTCAAagattaatgtatataaaatagcTAAGCAGTTTACAGTAAagattatacatgtattttgtatacaaaataaagtggtttaaattattttcttttcattgcacACTTCTCCCA
>TU86293
CAGGAAATAGGAAGAACCTTAGACGATGACTCCAGGTTTGCTTTATTGacattttgattacatttgttgCAGCTGTTTAATGATGGTGCACAGCCTGAGAGCTCCGGAGCTCTGACTTGAGAAGTTACCTGGAATTGGTTGCATTTCTGCAGGATCTCTACACCTCTCTGATCATTAAAGCATGGCATCTCCTGGAAGCGGCAAGTATGAGGACTGGATGTCTCAGCTGCCTGAACAACTCTGGGACATGGCTCTGTACACCCTCGCCATCCCAGGAAGTCATGATGCTTTGAGTTACTGTTTGGATATGGAGTCTCCCCTGATCAGGTCTGAATCTGCAGTATTGAAGAGCATGGACAAGGTCTTCCCATGCATCACCCGGCCAGTTATTTATAAATGGGCAACAACGCAGGAGAAGAACATTGTGGAACAGCTGACAGAAGGGATTCGCTATTTCGACCTGAGAATTGCTCACAAACCACAGGACTCTTCCGATGATCTGTACTACACTCACGTGGTCTACACCATTCGGACAGTCAGGGAGGTCCTAAAGGAGGTTGCCTTGTGGCTCACATCCCATCCCAAGGAAATTGTCATTTTAGCATGTAGCCATTTTGAAGGCCTGAACAGGGACCTTCATGAGAAACTGATCAGTTCTCTGAAGACAATCTTTGGCTCCAGATTGTGTCCTTACAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014297 False 630 mRNA 0.50 5 8135222 8138788
TU86291 True 727 lncRNA 0.40 2 8134903 8136194
TU86293 False 698 TUCP 0.47 5 8137331 8139126

Neighbor

gene id symbol gene type direction distance location
AMCG00014291 LOC107586940 coding downstream 74885 8020985 ~ 8060018 (-)
AMCG00014286 NA coding downstream 351901 7752906 ~ 7783002 (-)
AMCG00014287 NA coding downstream 383038 7731014 ~ 7751865 (-)
AMCG00014284 NA coding downstream 459645 7668553 ~ 7675258 (-)
AMCG00014280 NA coding downstream 554803 7569311 ~ 7580100 (-)
AMCG00014296 NA coding upstream 3063 8142189 ~ 8147008 (-)
AMCG00014295 NA coding upstream 9261 8148387 ~ 8155403 (-)
AMCG00014300 LOC107585190 coding upstream 27116 8166242 ~ 8186240 (-)
AMCG00014301 rp2,LOC107753404,LOC107711097,LOC107685300 coding upstream 49897 8189023 ~ 8197625 (-)
AMCG00014302 LOC107582727 coding upstream 120601 8259727 ~ 8260980 (-)
G68981 NA non-coding downstream 260545 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 508528 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 669241 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 675014 7455978 ~ 7459889 (-)
G68867 NA non-coding downstream 693731 7440500 ~ 7441172 (-)
G69086 NA non-coding upstream 87368 8226494 ~ 8250561 (-)
G69233 NA non-coding upstream 751430 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 859300 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 1210662 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 1450698 9589824 ~ 9590081 (-)
AMCG00014278 NA other downstream 711612 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 723013 7402152 ~ 7411890 (-)
AMCG00014271 NA other downstream 747919 7378088 ~ 7386984 (-)
AMCG00014241 NA other downstream 2026545 6059489 ~ 6108358 (-)
AMCG00014228 NA other downstream 2456404 5659072 ~ 5678499 (-)
AMCG00014298 NA other upstream 16806 8155932 ~ 8158590 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other upstream 244159 8383285 ~ 8384224 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 1166113 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1862008 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1918971 10058097 ~ 10061230 (-)

Expression


Co-expression Network