AMCG00014299 (slc9a7,LOC107673530)


Basic Information

Item Value
gene id AMCG00014299
gene name slc9a7,LOC107673530
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8204822 ~ 8250935 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014299
TGTACACTACACTGCTGCATGCGGATAGACACATCAAAGGGGGCAGTGCAACCTGAAGCCGCAGCACGTCGCCCAAAAATGGTGCAGTGCCCCTTTAAAAGGCGGGGCCGCCGGTTCCTCCTGTGGGCGGGGGGTTCTAGGTCTGTAGACTGGGTTCCTGGTCCTACGCAGTTCCTCAGACGGTGGAGGCACAGTCCGCCGCGACCAGCATCCTGCACCATGGACCTTGCGGACCAGCCGCCGCAGAGGAGAGGCTCTCCCCCCCACGGGAAGACCCTGTGGCCCGTCCTCGTCTTCCTCGTCGCTCAGCTGGGCGAGATGAGCGCCGAGGACAGCGGCATGGAGGAGCTGGCCACCGAGAAGGAGGCGGAGGAGAGCCATCGGCAGGACAGCGTGAATCTCCTGACGTTCATCCTGCTGCTGACATTGACCATTCTGACCATCTGGCTTTTTAAGCACCGGAGAGTGCGCTTTCTCCATGAGACCGGCCTGGCGATGATCTATGgcCTGCTGGTGGGTGTTATCTTGCGCTATGGCATTCCCTCCACCAGCTATCACCATAAGACCCCCCCCAGCTGCTCCCTGCAGGACCGGCCTGTCAGCACGCTGCTGCTCAACATCAGCGGGAAGTTCTTCGAGTACACGCTGAAGGGCGAGATCAACTCCAGGGAGATCCACAACGTGGAGCAGAATGACATGCTGCGCAAGGTCACTTTTGATCCAGAAGTCTTCTTCAATATTTTACTGCCTCCAATTATTTTCCATGCTGGATACAGCTTGAAAAAGAGACATTTTTTCAGAAACCTGGGTTCAATCATCACGTATGCATTCCTAGGAACGGCGCTCTCGTGTTTTGTAATTGGCAATCTGATGTACGGTGTGGTGAAGCTGATGCAGGCGGTCGGGCAGCTGACGGACAAGTTCTACTACACAGACTGCCTCTTCTTTGGAGCCATCATCTCCGCCACTGATCCAGtgactgtgctggccatcTTCAATGAGCTGCACGCCGATGTGGACCTGTACGCACTCCTGTTTGGGGAGAGTGTCCTGAATGACGCGGTGGCCATCGTGCTCTCGTCGTCCATCGTGGCGTACCAGCCCACCGGCGGGAACACTCATGCCTTCGACGCCGCCGCCTTCTTCAAATCGGTGGGCATCTTCCTGGGCATCTTCAGTGGCTCCTTCGCCATGGGTGCCGTCACTGGAGTGGTCACCGCTCTCATATCTTTTTCTGTGACCcctccccaccacacacacTTCACCAAGCTGCACTGCTTCCCCCTGCTGGAGACAGCGCTGTTCTTCCTCATGTCCTGGAGCACCTTCCTCCTGGCCGAGGCCTGCGGGTTCACAGGTGTGGTGGCTGTGCTCTTCTGTGGAATCACTCAGGCCCATTACACGTACAACAACCTGTCTGACGAATCGACAAAAAGGACTAAGCAGcTCTTTGAGGTTCTGCACTTCCTGGCTGAAAACTTCATCTTCTCCTACATGGGTCTGGCTCTGTTCACCTTCCAGAACCACATCTTCAGCCCCATCTTCATAATTGCAATCTTCATAGGAAGAGCCTGCAACATCTACCCCCTGTCCTTCCTGCTGAACCTGGGCAGGCGACACAAGATTGGCTGGAACTTCCAGCACATGATGATGTTTGCAGGCCTGAGGGGAGCCATGGCGTTCGCGCTGGCCATCCGCGACACGGCCACCTACGCCCGGCAGATGATGTTCACCACCACCCTGCTCATCGTCTTCTTCACGGTCTGGGTGTTTGGAGGGGGCACCACTCCCATGCTGTCATGGCTGCACATCAGAGTTGGTGTGGACCCCGATCAGGACCCCCAGCCCAGCAGTGACAGTTTCCAGGTGCTCCAAGGAGACGGGATTCAGCCCGAAGGAACGAGCAAGACCAAGCAAGAGAGCGCCTGGCTCTTCAGACTGTGGTACAGCTTTGATCACAACTACTTGAAGCCGATCCTGACGCACAGTGGACCTCCGCTCACCACAACGCTCCCAGGATGCTGTGGGCCCCTGGCTCGCTGCCTGACCAGCCCACAGGCCTATGACAATCGGGAGCAGCTGAGGGACACCGACTCGGACCTCATCCTCAACGACGGTGACCTCACTCTGACCTACGGTGACACAGCCATCACTGCCAACGGGGCGTCGGGCAGCCACGGCCCCGCGGGAGCCTCCGGGCTGGGGATCAACGGCAAGAGGAGCAGCAGCACGTCAGAGGAGGCGCTGGAGCGCGAGCTGGAGGCCGGGGAGCACGAGCTGATCAGCCGGGGGACTCGCCTGGTGTTCCCCATCGAGGACCACGCCTGACCGCCCGCCCGCCTGCCCGCCATCCCCGCGGCCCAGGACACAGGCAGGGGGCTGGATTGAGACCCTTCTTGCCCCTGGAGAAACTCGGGCCATGTAGGCCGGCCATAGCTGATCATCCAATCGTAGCTCTTTAAGGAGCaagggacagaaaaaaaaaaaaaaacaattctgcgGCATTTCATTCTCATCAAGTACGGACTGGAGGAAATGCGGCTTTGCTCGTGTCGGCAACCTTTATTCACGATGAGATCATGTGCTGTATGCAGTatagatgttatttttattatttgtatgtcgtctttttttttttttaaatgcttgagCGAGGGaaaggagagggaaaaaaaaaaaaaaaaaggaaactttcCCAGAGGATGTATTTGAAAACTTTACAACCTCCTGGGAAATGAGTTCAGCACACGATTGCTGTACCTCTTTTGAGAGGTGGTCCTAGAATCGAAAGGGGAGGAGCTTAACCAAGCTAGAATTGATCACTTTCCATCCTAAGACAAAGGTCGTCAGTCGGGCGCTTTAAATGCCTGAGCCAGGGGTAGGTCTGTGAAGCCAATCAACTGTCCTAATCGAGTCACATTGCTGCTAAGAGACTCAGCCCTGGAAGATGGGCCAAAAGGTCGCCAGGCCTCTGCTAACGTGTGAGCCATAGTTCATCCCCGCTAGCCCACCAGAAGACCCCAGTAAGCATGAAACTAAATGATTTTAATGTAAACCAccctctttgttttgttttacaagtGCAGTGGCTATCAAAGCATCACATACACATATAGACTGTTCTAGAGTCAACGATGTCCATTAATCGTGGGTTACATGTTTTTAAGGATCACAGATTACATCTCGTGGAGCTTAATGCTTCTGCTCTAGGTTCGAGGAAAGTTGAAACAGAAGCAGCTCTGATTGGTCTCGCTATACAATCCACTTCTGTGTCAGAGCATAATTTCAACGTGGGCCTTCTTGAGCATCACTAAAGTGGCAGTGCTTTATTGTGAGTAGCCATGAGATGACGAAAGGGGGACGGGATGCATTTTAGGCGATTTTAGGCGATCATGTAGGCTTGCTAATGGGAACAGATGAATACAATATGTAATACTTCTACATCTCCACTCTCTTATTCACCACTGTGTGAAGCGACTGGAGTTGAATTGCCATTTCAATGCATTATTTCTGGGACCGGAGCAATGCTCCTACACCTCGGATGGATCCATTTTTATAAATTTATTACTAATTTTTAGTCCATCCCGCACACTTAGCCAGCTATTACCGACCACTTCAGCGGTTTAGTATCGTATTCACACTTCATTCTCATTAACCTGATGTAAATGTGCTGTCCATTGCAGCACTGAGAGACTGTGTCTGCGCCCTTCCTACCTTGTTCGGCATTTTGTATTGAAACCATACCCACTGGTGCCAAGACTCGCCAATGTCTGCCATACACCTGAGACTAGCTATACACAGAGGGTCCCAGAGAAAAGTGGGCTGCACTTTAGTTGGTCACTTCTCCCAACAAGACCAAGTGAAGCAATACGAAAGCTGTTGGTTGGAATAATGTACTGGGTTGCAATGAAGGTTCAGTGGACAGCACTGTGTTGACTAACAGGCCAGAGGGGAGGCTGCAGGAAGCCATTAGATGTGCTGTATCGGCAGCATAGTGTTACTTTAGTTGAGAAAGATATCAGTTCTTGAAACgtccaaaaaataataatgtaattgaaatgcTTCACTGTAGTTAAATCTGTGTGACTCGactgctgtgtgtttctggTTCGGTGTCGAGCCATTTTCTGATGGTCTCTGTGAAAGGATACTGTGACTTCCCATTCGGCAGAGGGTATAAGGCCAAATGTCCAAATTGACTGAATTTTTCTACTTCTGCTAATTTTGCGCAATAATGTTTTCCCACAGTTGTAAAGCTGTCACTCAGTTTAAAGTCTTTAGTTGCATCTTGGAGCTGCAGTGCAACTCGTAGCACTGCAGCGGGTTAGTGAAAATGTTCTCTGCAGGAGATAAAGTCTGAAGCACTTTAACTGCGGTTGAGCTGCAGTCATTATGCCGACGAACAAAAGGCTGTCCTGTCTGGTTGAAAATGCATTGCTTACTAATTGCAGAGAATCCCGAGTGGGTTCTGAATTTAATCGTGAATAACAAATGAAGTaatcacattgtttaaatgCGTCTCGAGTAATTATTACTAGGAAGTGAAGTGtgtactgtttgtttgtgttgttatatAAGTGTAAATGTGACATGTATACAGTGGGCTCCAAATACTGTCATCATTGATATCTGAAACTCAAGCTTGCGAATGAGTGGGATGTGTGTTGGATTGTGTCTGGGGTCCCCAGTCCTGGTCCAGCAGGCATTCAGATCTCTATCAGAGCTGCTAAGAGAGGTTGCTTTGGTTCTGGAAAGGCAATAAACAGTTGAATTGGGTACTAAGGGGCTCAGGTGGATATAAAATCATGGCTGCCCTCCAAGACTGGGGACCCCAGCTTTaaatttctgctttttaaatgtgatttgttgAGGACCTTGATCTTAAAGTCTTTCGCAGAAAGGAGCGTTTAGTGTGTATTACTCTAAAATTACAGGGTTATTCTGAAAGCAGTACAGCATTTCACACACGTACTGTGATCAAACTACATATTCCCGATGCACAAATAATCATCAATGGAAACTGTAACTCGCAAAGATGTTACAGCCTGGCAACTATTTGTAGATCAGGAATGTATAGTTGGATCACAATACATTCTTGAAGTGATATACTTGTATAATAAGCCTGTACAGGAGTTTGGATCCGAGTGGGTTCTGGCCACGTGGATTACTAAAAATCATTTGGGATCGAAAGCTAGACATGACATTTCAAAAGGGTCTTGGTCTGAGAGTGTATTTAtgctaaataattcaatattgtaATGTAACGTAATCGTACATCTCCCTAAATGATTAATGCCATCCTTCCTAAAACATGCTTTATCTGGATCCCATATTTTCTTTGGAGCCCACTCTATAGACCttctaattaattattgaaatgcGTCTCAAAGACCCATCTGTGACTGACTATACACTTCATGGAAGCACAGCCACTGTCTTTTACTGGAAATATTCGGCTTCACTTTGTTGCCCTGCGGTACAGCCTTTCTGTGTTTCCAAACTCTTGTGGTCTTCTCTGTTTTTGAATCGGAGGAGAAATATAGCCAACAAATGATGTGTGTAAATTCTGTTTCCAGTTACTGCAAAGGGAAGTGGGGTGGTAatctgtgcatttgtctttttgtaAAGTTGTTTGTTTTCGGGAAGACACTGAGCCGCTTCTTTTTTCATCGAAATCTTGAGGAAATCTGACCATTCTTTCTATTCTACAAACGTCTCTTTTGATATGGATTGTGGGTCGAGTTGACGCCCCTTTCAGCCTGGAAGTATGACTGGAGATTGTGCAATCATGAATGTAGCAGCCTTTAGATTTTCTCTGCTGTTTGACTGGCCGTGCGACATCGAGGTGGGACGCTTGCCCACCAGTGACCAATCGGCGGAATCGCACTTCTCCGTGCTGCGTGTCCACGGCCGCTTCTTCGTGTAATGTACGTCCTCCGGGGACATCCCTCCTCCTGCCTGACTCTCATTCAGACCCCTAGAAAAACCTTGCAACTGTTTCATTTGAGATGTTCTGCATGTGATATCTGTCAATAAAATCTGTCCTGCAGGctggtattttttttactgtacaaaGGTTTCCTACATCAGCCTTCTTCATGCGGTTTTCCTGTGTCTTATCCTCATGATCGTTTGAAAGGCCCGGTCGGCTGGGGGTTGGTGCTGTCACCCTTAGCCAACATTGCGGCTACTGTAGAGCACTAGAATGTGAACAGAGGTTTGGTGAGGGCTTGTGTAACGGGGATTGTCATGTATGTGAGCCTGTTTCAGTGACATCACCCCCTTGGGATGTTGAGGGGGTATTGCAGGCTTGTGTTTCTTGTCTGGGCTGTGTGGCTATAACAGAATTGGGAATGTGGGTTTTTAATCTCAAAGGCTACAGCTGTGTGATCTGTAGCCCTGTGAGCTCAGATACTGAGTAGACCTGTGCAACACACAACCCTTAGACATCCGCTGAGCTGGTCTTCTGTTCTGCAACTTAAGTGCATCTATTTTCACcattttgcatatttcaaaATCCTCATTGTCCACATAACTGATGGTGTAAGTCAATTTCCTAGAGGCAACTTCTTCAAGAAATTGCTCTTCCATTTTCCCTTCCATAAGCTTTTCATCCAAAGTTCTTAAGTgcattaagtat

Function

symbol description
slc9a7 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and recycling endosome. Is expressed in female organism; gill; and testis. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 108. Orthologous to human SLC9A7 (solute carrier family 9 member A7).

NR:

description
PREDICTED: sodium/hydrogen exchanger 7 isoform X2

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015385 sodium molecular_function

KEGG:

id description
K12041 SLC9A6_7, NHE6_7; solute carrier family 9 (sodium/hydrogen exchanger), member 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014299 True 6640 mRNA 0.49 16 8204822 8250935

Neighbor

gene id symbol gene type direction distance location
AMCG00014293 NA coding upstream 43542 8160408 ~ 8161280 (+)
AMCG00014294 NA coding upstream 73029 8128204 ~ 8131793 (+)
AMCG00014292 NA coding upstream 77727 8120375 ~ 8127095 (+)
AMCG00014290 NA coding upstream 201544 8000090 ~ 8003278 (+)
AMCG00014289 tspan7,tspan7b,LOC107704418,LOC107745974,LOC107593043,LOC107586946 coding upstream 349471 7845556 ~ 7855351 (+)
AMCG00014306 cyfip1 coding downstream 12501 8263436 ~ 8321739 (+)
AMCG00014307 LOC103356925 coding downstream 92066 8343001 ~ 8382284 (+)
AMCG00014308 herc2,LOC102311645,LOC101466252,LOC102196790 coding downstream 135230 8386165 ~ 8401359 (+)
AMCG00014309 oca2,LOC107716962 coding downstream 228047 8478982 ~ 8507687 (+)
AMCG00014314 gabrb3,LOC107673538 coding downstream 544293 8795228 ~ 8824532 (+)
G69023 NA non-coding upstream 68612 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 189819 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 330080 7874527 ~ 7874742 (+)
G68904 NA non-coding upstream 578418 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 1146503 7056707 ~ 7058319 (+)
G69206 NA non-coding downstream 483388 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 639651 8890586 ~ 8890834 (+)
G69326 NA non-coding downstream 1115602 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 1650515 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 1723489 9974424 ~ 10028351 (+)
AMCG00014272 tbc1d23 other upstream 722262 7464503 ~ 7482560 (+)
G68848 NA other upstream 788228 7413640 ~ 7416594 (+)
G68830 NA other upstream 855355 7346195 ~ 7349467 (+)
G68475 NA other upstream 3552858 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4073104 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 1752123 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1897044 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4995374 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5404303 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5938629 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002165 slc9a6b coding NC_007121.7 CM002894.2 26571174 ~ 26597800 (+)