AMCG00014306 (cyfip1)


Basic Information

Item Value
gene id AMCG00014306
gene name cyfip1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8263436 ~ 8321739 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014306
GCGGTCTGTTCGGTTGAGGGCGCTGTGCTTAGAAATGATGGCGGCACCCAAACAAAGCCATCCCGCTGGATACAGAGGAGcacttttttaataatatggTGACTTATAATATCAAAAAAATCACTAACATTACGTTGTCATATTTGTGTACGTATGCAAATGAAGCTAGTCAATGCAATCCGCGAACTGAATTCAATTTGAGATGTTTCAGTGCAGTCTATTCATTTGTAACCAGGGTTGTGGTGTAGTGTGAATATGTAGCTGTCAGGGATTGTTTCTGTTTACCCAGCGCACATTTATCtacaaaacaaagtgaatatATCATACCCgccattttaatttctgaataaaTCATTGAACTGCAAAACATGCGCTCCGTTTGCATCGACCAGACGCCAGTGCCCTGCTGAACCGCCGAGGCCGTTTTCTGCGGAGGGTTTATTCATACCGTGTTGCCCAAATTAATCGGCATCATTAATCACCACCATGACACACTGGACGAAATTTGAGAGAGACATGGACCACGACATCAAGAAGCTGATCAAACACATCAGCGGGATACAGGATGAAGAAGACCACAATTTCCAGACGGCCATGAAGTTCGCCTGTTCCAATTTCAAGTTTCATCGGTACCTGGATGTCAACAGTCACAAGGTGCAGCGCACTGTCAGTGGAATCTACGAGAAGCTGATGGTTCACTCGGATGTGAGCAAAGCTGCAAGCTGGAAAAGATTGACTGATGAATTTATGAACTCTCCCCTACCaaacacagaagaaacaaatACAGATGTCCATCACAGCATCCTgtccctcctgctcctcctctctGATTCTCCATCTAACACAAATTACAGTGAAAAGCCCAGACTGAAGGAAGTGGaaaaagaagatgaTTTTGACTGGGGTAAATATTTGATGGAAGGAGAAGATATTGACATGGGACCTTTTCCTGACACTCCTGAGTGGTCAGAGGAGGAcagtgaggaagaggagagtCAGGAGCCATTGAGCAGAGAGGATTCTGGGATCCAGGTGGACAGAACACCCTTGGATGACCAGGACCAATCCAAGAAGACTGTGCAAGTCACTTGGAAGGTGGGTGAGCCGGATGCCCGGGCCTGGCTGGAGCAGCACGTGGTGACGCAGTACTGGGTGGCCCAGGCCCCTCGCTTCACCCACAGCCTGCACCTGCACTCCAACCTGCTCAATTTCTGggACCAGCACTTGTACAACACGGATCCACTGTACATCCCTGAAGAGAAAGTGTTCGTCACTGAAACCCAAGTGATAAGAGAGACTCTGTGGCTCCTCTCTGGAGTGAAAAAACTCTTCATATTTCAGCACCATGATGGGAAAGTAACTGTGAGGAATGATGTTGTTGTCACTCATTTGACAAATAACTGTTTGCGATCGGTCTTGGAGCATGTGGCCTCATATGGGCAGGCGGTGTCCCGACTGCAGAAGTTCATTGACGAAGTGACCGGGTACTGCGTTGAACCCGCCCCGCCCGGGACCACCACCTCGGGCAAGAAAGGGTCCGAGCCTCCATTCAGGACCTACCAGGCCTTTGTCTGGGCTCTCTACAAATATTTTGTCAGCTTTAAAGAGGAGCTCACCAACATCGAGAGGTGCATCATTGTGAAAGATGAAACGGTCACGCTGTCTGTGGTGCTGGAGCGCCTCACCCCCCACCTGGCTCAGCTGAAGGTCCTGCACAAGGTCTTCTGCACAGGAGTCGCCGAGGTCCCCCCCGACACTCCCAACGTAGTGCGGGCATCCCACCTCCTCAACACCCTCTACAAGTCCATCATCGAGTACGACAGCATCGGAGAGGCGTCCGAGCAGGCCGTGGCCCTCCTGTTCTCCCTGTGGGTGGAAACCGTGAGGCCCTACCTGGAGATTGTGGATGAAGACTTCTGGTACGCCACCTACACCCTGTACAGCGTGTCGGAGACCGTGGAGAACGAGGAGAAGCTGAGCGACAGCGCCAGCGGCAGCTCCGCCAGTGACCAGGCCTCTGCGGCGAGCAGACAGCACACCATGGTCTCCTTCCTCAAGCCGGTGCTCAAGCAGATCATCATGGCTGGCAAGTCCATGCAGCTGCTGAAGAACCTGGACTGCAAGGAGGCAGGGCAACAGGAGAGCATCTACACGCTGTTCCTGGAGTCGGTGCAGCTACGTCTGCGCTGTGGGGAGGAGTCGCCCTCGGACACCGTGACCGAGCAGCAGGCCACCAAGAGGAGCCTGATCAGGATGCAGTCCATCGTGGCCAGACACCTGGAACTGGACGACGTTCATGACCCCCTGCTGGCCATCAATTTTGCAAGGCTGTACTTGGAGCAGAATGACTTCCACGAGAAGTTCTCGGGCAGCGACATCATCGTGGACCGCTCGTCTGAATCCGTGACCTGCCAGACGTTTGAGCTCACTCTGAGGTCCTGCCTGTACCCCCACATTGAGAAGAGACTCTTGGAATACCTGCAAGCCATGAGAAACTACTTCCTGCTGGAGGCTGGCGACACCATGTACGATTTCTACACAGCCATTTTTGACAAGGTGCTGGAGAAGGAGAGCTGGCAGCAACTGTCCTTCCTAAATGTGCAGCTGCAGGAGGCTGTGGGACAGCGCTACCCAGAGGACAGCACCAGGTTGTCAATATTTTTGGAAACCATTGACCCGGCCAGGAGGAAACAACCAGTGAACAATTTAGATGGTCTTACACTTAGTTATAAGGTCCCCTGGCCTGTAGACATTGTGATCAGCTCTGAGTGTCAGAAGATTTACAACCAAGTGTTCCTTCTCCTGCTACAGATTAAGTGGGCAAAATACAGCCTGGATACGTTACGCTTCAGTGAACTGACCGTGGCTACCAAAAGGCTTGAAGGAGGTTTATTTGATGAAAATGCTTCTAATGAACCCATCAAACAGCAGATTCACAGGATGTGTCTTCTCCGGGTTAAACTCATGCATTTTGTCAACAGCCTGCACAACTACATCATGACCAGGATCCTGCACAGCACGGGCCTAGAGTTTCAGCACCAGGTGCAGGAGGCGAAGGACCTGGACCAGCTGATTAAAATCCACTACAGATACCTGTCCACCATTCATGACCGCTGCCTCCTGAGAGAGAAGGTCAGTTTTGTGAAGGAAGCGATCATGAAGGTACTCAATCTTGTCCTGATGTTCTCTGATCGATGGCAGGCTGGATTTGGAGCCTGGAAGATTGAGTCCATTGATAAAATGGAATCTGATTTCAAAAACTGCCACATGTTCTTGGTGACGATTCTCAACAAGGCCGTCTGCAGGGGCTCGTTCCCGCACTCGGCGGAGGGCGGCAGGGCCGGGGCTCCGGGTTTCCTGTCGAGGCTCCAGCCCCAGTCAGACAGGAACTCCCAGCCCCAGCGCTCCGCCGGGCACAGATCACTATCAGCGGCTGCCGGGATCCGCCACGACGGGAAAACCGACACTTGGGGCGGATTAAAAGGTCCCGGAGACGGAGAGGACGAAGCAGGCTCTCGGAGGACCTTTGGAGACTCTCGCCCCCCTCAGCCTCGCGCCATGGCGTCCACGGTGACTCTGGAGGATGCCCTGTCCAATGTGGACCTGCTGGAGGAGCTGCCCCTGCCTGACCAGCAGCCCTGCATTGAACCACCACCCTCCTCTCTGATGTACCAGcCAAACTTCAATACCAACTTTGAAGACAGAAATGCTTTTGTCACTGGTATCGCCAGATACATCGAGCAGGCGACGGTCCACTCCAGCATGAATGAGATGCTGGAGGAGGGGCAGGAATACGCGGTGATGCTGTACACCTGGAGGAGCTGCTCCCGAGCCATTCCTCAGGTGAAATGCAATGAGCAGCCAAACAGAGTGGAGATCTATGAGAAGACTGTGGAGGTCCTGGAGCCAGAAGTCACGAAGCTGATGAACTTCATGTATTTCCAGCGCAACGCTATCGATCGCTTCTGTGGCGAGGTGAGACGTCTGTGCCACGCGGAGAGGAGGAAGGACTTTGTGTCTGAGGCCTATCTGCTTACTCTGGGGAAGTTCATCAACATGTTTGCGGTGCTGGATGAGCTGAAGAACATGAAGTGCAGTGTGAAAAATGACCACTCCGCTTACAAACGGGCTGCTCAGTTCCTTCGGAAAATGTCTGAACCCCAGTCCATTCAGGAGTCGCAGAACCTGTCAATGTTCCTCGCCAACCATAATAAAATCACCCAGtctctgcagcagcagttgGAGGTTATCAATGGTTACGATGAGCTTTTGGCTGATATTGTGAACCTGTGTGTTGATTACTATGAAAACAAGATGTATCTAACGCCTACTGAGAAACACATGCTGCTCAAAGTCATGGGCTTTGGTTTATACCTGATGGACGGGCAGGTGTGCAACATCTACAAACTGGACGCCAAGAAGAGAATCAACCTGACCAAGATCGATAAGTTTTTCAAGCAACTGCAGGTGGTTCCCCTGTTTGGCGACATGCAGATTGAGCTGTCGAGGTACATCAAGAACAGCGCCCACTTCGAGGAGAATAAGTCCAGTACAACATCTGTGGTGACTGGCTCGGGTCGGCAGGAGGCCCAGAAGACGGACGCGGAGTACAGGAAGCTGTTTGACCTGGCGCTGCAGGGCCTTCAGCTGCTGTCCCAGTGGAGCGCCCATGTCATGGAAGTGTACTCCTGGAAGCTTGTCCACCCCACGGACAAATACTCCAATAAGGAGTGCCCGGACAATGCGGAGGAGTATGAGCGAGCCACGAGGTACAATTACACCAGTGAGGAGAAGTTCGCGCTCGTGGAGGTCATGGCAATGATCAAGGGTCTGCAGGTCCTCATGGGGAGAATGGAGAGTGTCTTCAACCACGCCATCCGCCACACCATTTACTCCGCGGTGCAGGACTTCTCCCAGGTCACCCTCAGGGAGCCCTTACGCCAGGCCatcaagaaaaagaagaacGTTATCCAGAGTGTCCTTCAGGCTATACGAAAGACCATCTGTGACTGGGAGACGGGCCGGGAGCCCCCCAATGACCCCGCACTCCGAGGAGAAAAGGACCCTAAAGGTGGCTTTGACATCAAAGTGCCGCGGCGAGCTGTGGGACCATCCAGCACACAGCTCTTCCTGGTGCGCACTATGATCGAGTCCTTGCTCTCTGCTAAGCAGCTTAAGTCTATTGGGATGGAAAAGTTAGAGTATGTGATAAACAAGTTTCTGAAGCTCTCCTACGTCTTTCCGTATCTTATTATGTTTGGTGAGACGCTGCAGCAGTGCTGTGATCTGTCACAGCTGTGGTTCCGGGAGTTTTTCCTGGAGCTCACCATGGGCCGCAGGATCCAGTTCCCAATCGAGATGTCCATGCCGTGGATCCTCACCGACCACATACTGGAGACTAAAGAGGCCTCCATGATGGAGTATGTCCTTTATCCACTGGACTTGTACAATGACAGTGCGCATTACGCCCTGACGAAATTCAAGAAACAGTTCCTTTATGATGAGATTGAAGCTGAGgttaACCTGTGTTTTGATCAGTTTGTCTACAAACTTGCTGACCAAATATTTGCCTACTACAAGATTCTGGCTGGAAGTTTGCTCTTAGACAAGCGTCTGCGCGCCGAGTGCAAGAATCAAGGAGCCAATATCCCCTGGCCAGCCTCCAACCGATACGAGACCTTACTCAAACAGAAGCATGTCCAGCTCCTGGGCCGATCGATAGACCTGAACCGTCTGATCACCCAGCGCGTCTCTGCTGCCATGTCCAAGTCGCTGGAGCTGGCCATCAGCCGCTTCGAGAGTGAGGACCTCACCTCCATCATGGAACTGGACGGTCTGATGGAGATCAACCGGATGACCCACAAGCTTCTCAGCAAGTTCCTGACCCTGGACAGCCTGGACGCCATGTTCAGAGAGGCCAACCACAATGTGTCGGCACCCTATGGCAGGATCACCCTTCACGTCTTCTGGGAGCTCAACTATGACTTCCTCCCCAACTACTGTTACAACGGCTCAACCAACAGGTTTGTGCGAACTGTCCTGCCCTTCTCTCAAGAGTTCCAGAGGGACAAACCTCCCAACGCTCAGCCGCAGTACCTGTACGGCTCCAAGgcaCTGAATCTGGCGTACAGCAGCATCTATGGTTTCTATAGGAATTTCGTGGGCCCACCTCACTTCAAGGCCATCTGCCGGCTGCTGGGATACCAGGGGATAGCCGTGGTGATGGAGGAGTTGCTGAAGGTAGTAAAGAGTCTGCTACAGGGAACCATCTTGCAGTATGTGAAGACTCTGATGGAAGTGATGCCCAAAATCTGCCGGCTTCCGCGACACGAGTACGGCTCCCCAGGTATACTGGAGTTCTTCCACCACCAGCTGAAGGACATCGTGGAGTACGCCGAGCTGAAGACCGTGTGCTTCCAGAACCTGCGAGAAGTGGGCAACGCGGTCCTCTTCTGTCTCCTCATTGAGCAGAGCCTGTCACAAGAGGAAGTGTGTGACCTCCTGCACGCGGCTCCCTTCCAGAACATTCTGCCGCGGATCCATGTCAAAGAGGGTGAGCGCCTTGATGCAAAAATGAAACGTCTGGAGACGAAGTACACCGCGCTGCACCTCGTTCCGCTGATCGAGCGCCTGGGAACCCCGCAGCAAATTGCCATCGCAAGAGAAGGAGACCTCCTGACAAAAGAGAGGCTGTGCTGCGGCCTGTCCATGTTCGAGGTGATCCTGACCCGCGTCCGTGGCTTCCTGGACGACCCCATCTGGCGCGGCCCCCTGCCCAGCAACGGGGTGATGCACGTGGACGAGTGCGTGGAGTTCCACCGGCTCTGGAGCGCCATGCAGTTCGTGTACTGCATCCCCGTGGGCGCCCACGAGTTCACCGTCGAGCAGTGCTTCGGGGACGGGCTGCACTGGGCCGGCTGTATGATCATCACCCTGCTGGGGCAGCACCGGCGCTTCGACATCCTCGATTTCTGCTACCACCTGATCAAAGTGCAGAAGCACGACGGCAAGGATGAGATCATCAAGAGTGTGCCGCTGAAGAAGATGGTGGACCGGATCCGGAAGTTCCAGGTGCTGAACGACGAGATCTTTGGCATCCTGTACAAGTACCTGAAGGCTGGAGACGGGGAGAATATGCCCGTGGAGCACGTGCGCTGCTTCCAGCCGCCCATCCACCAGTCCCTGGCCAGCAACTGAGACCGGCGTCGACGGCAGCGTCCCCACCAGCCGAGTGGCCACGGACACGGACGCTCCTCGGGAGTGTGGAGCCCGTTGTACTATGTGCCTTAGATCGGGTCTGGGCCAGATGATTCTGTACACGCTTGTGCCTTattgaagagagagaaaagtaacGCTCACGGCCCCTTCATTTTTAATGTCTAcgctttataaaatgtttttttatatattatatatatatatatactaccttacttattttatatgttttataccTTGCAATGTGGAAAATGAGGTAGGGGAAGGCACAATAATCTTGTGGGATTTTTGCTAAATGGTTCTTGAACAGTAAAACGGTTTGCAGTGGTGAAGGACGGGTAGTAAACAGTAAATCTGATCTTGCGTAAGAGTGGGTTTGTAGAGAATACTGTGCTTGCTTTGTGAACTAGTAAAATTGCATGCTaagtccttaaaaataaaataaatcatataaccTTAATCTGAATGATATTTAACCAAGTTATTGCAACTTCTATTGGTAACCATTTCTTGCCTGTGACTTTTCTATTTGAATTGTTACTTTGTttgaattcaataaaaataactgttgaTCTGAGTCTCTTCTAGCTGTTGAATATTTTCAGATAAATTTGAGAGTGTGATGAATAATTTCCTGGACATTTTTGTTGGTATATCCTGACTTTATCCTGTAAATCTGTatgaattatacaaataatataagaaAGTGTGCCAGATGTCATTTCTTATTTCTATAATTCTTTACATCCATTGTTGcattaaaataagacaaaag

Function

symbol description
cyfip1 Predicted to enable RNA 7-methylguanosine cap binding activity and actin filament binding activity. Acts upstream of or within with a positive effect on axon extension. Predicted to be located in cytoplasm. Predicted to be part of SCAR complex. Predicted to be active in neuron projection and synapse. Human ortholog(s) of this gene implicated in autism spectrum disorder and schizophrenia. Orthologous to human CYFIP1 (cytoplasmic FMR1 interacting protein 1).

NR:

description
PREDICTED: cytoplasmic FMR1-interacting protein 1 homolog

GO:

id name namespace
GO:0031529 ruffle organization biological_process
GO:0030032 lamellipodium assembly biological_process
GO:0048675 axon extension biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K05749 CYFIP; cytoplasmic FMR1 interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014306 True 7993 mRNA 0.52 53 8263436 8321739

Neighbor

gene id symbol gene type direction distance location
AMCG00014299 slc9a7,LOC107673530 coding upstream 12501 8204822 ~ 8250935 (+)
AMCG00014293 NA coding upstream 102156 8160408 ~ 8161280 (+)
AMCG00014294 NA coding upstream 131643 8128204 ~ 8131793 (+)
AMCG00014292 NA coding upstream 136341 8120375 ~ 8127095 (+)
AMCG00014290 NA coding upstream 260158 8000090 ~ 8003278 (+)
AMCG00014307 LOC103356925 coding downstream 21262 8343001 ~ 8382284 (+)
AMCG00014308 herc2,LOC102311645,LOC101466252,LOC102196790 coding downstream 64426 8386165 ~ 8401359 (+)
AMCG00014309 oca2,LOC107716962 coding downstream 157243 8478982 ~ 8507687 (+)
AMCG00014314 gabrb3,LOC107673538 coding downstream 473489 8795228 ~ 8824532 (+)
AMCG00014315 NA coding downstream 553428 8875167 ~ 8875832 (+)
G69023 NA non-coding upstream 127226 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 248433 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 388694 7874527 ~ 7874742 (+)
G68904 NA non-coding upstream 637032 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 1205117 7056707 ~ 7058319 (+)
G69206 NA non-coding downstream 412584 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 568847 8890586 ~ 8890834 (+)
G69326 NA non-coding downstream 1044798 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 1579711 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 1652685 9974424 ~ 10028351 (+)
AMCG00014272 tbc1d23 other upstream 780876 7464503 ~ 7482560 (+)
G68848 NA other upstream 846842 7413640 ~ 7416594 (+)
G68830 NA other upstream 913969 7346195 ~ 7349467 (+)
G68475 NA other upstream 3611472 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4131718 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 1681319 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1826240 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4924570 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5333499 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5867825 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location