AMCG00014308 (herc2,LOC102311645,LOC101466252,LOC102196790)


Basic Information

Item Value
gene id AMCG00014308
gene name herc2,LOC102311645,LOC101466252,LOC102196790
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8386165 ~ 8401359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014308
ATGGACCTCGTCACCTGTCTGCTGGACTTCCGCCTCAACTTTGCCTCCAACCGTGGCATTGTTCCCCGGCTGGCCGCCTCGCTGGCTGCCTGTGCCCAGCTTAGCGCCCTAGCTGCCGGACACCGCATGTGGGCCCTGCAGAGGCTGCGCAAGCTACTGACGACGGAGTTTGGCCAGTCCATCAATATCAATCGGCTCCTGGGAGATGCGGAGGGCGAGCCCCGCTCTATGGGTTTTACCGGCAGTGCCTTGGCGGCTTTGGTGAAGGGGCTTCCGGAGGCGCTACAGCGACAGTATGAATACGAAGATCCAATCGTTCGAGGAGGCAAGCAACTGCTCCACAGTCCATTCTTCAAGGTGCTGGTGGCCCTGGCCTGTGACCTGGAGCTGGACACCCTGCCCTGCTGTGCCGAGACGCACAAGTGGGCCTGGTTCAGGAGGTACTGCACGGCCTCCCGGGTGGCTGTGGCGCTGGACAAGAGGACCCCACTGCCACGGCAGTTTCTCGATGAGGTGGCCAAGAAGATCCGCGAGCTCATGGCCGACAGTGAGAACATGAATGGCCTTCACGAGAGCCATGATGTGTACAAGAGGGAGCAGGACGAGCAGCTTGTGCAGTGGATGAACCGACGGCCAGACGACTGGACCCTGTCAGCGGGGGGCAGTGGGACGATCTATGGCTGGGGACATAACCACCGAGGTCAGCTTGGGGGTATTGAAGGGGCAAAGGTCAAAGTTCCCACCCCGTGTGAAGCCCTGGCCACCCTGAGACCCGTGCAGCTCATCGGAGGAGAACAGACCCTCTTCGCAGTGACGGCTGATGGGAAGCTCTACGCTACGGGCTACGGTGCGGGGGGCCGTCTGGGGATTGGAGGCACAGAGTCGGTATCCACCCCCACCCTGCTGGAGTCCATCCAGCAcgtcttcatcaggaaggtggCCGTGAACTCGGGGGGCAAGCACTGCCTGGCGCTGTCCTCCGAGGGAGAAGTGTACTCCTGGGGTGAGGCCGAGGACGGGAAGCTGGGCCATGGGAACCGGAGCCCCTGTGATCGCCCGCGTGTGATCGAGTCTTTGAGGGGCATCGAGGTGGTGGACATCGCTGCCGGGGGGGCCCACAGCGCCTGCATCACCGCCAGCGGGGAGCTCTACACCTGGGGCAAGGGCCGCTATGGCCGCCTGGGCCATGGGGACAGCGAGGACCAGCTTAAACCCAAACTGACCCTGTGCCTAACCGACGACGACACGGTGTGGTCCTGGGGGGATGGGGACTACGGCAAGCTCGGCAGGGGAGGCAGCGATGGCTGCAAGGTTCCCATGAAGATTGACTCCCTCACTGGTCTTGGAGTTATTAAGGTTGAATGTGGATCTCAGTTTTCTGTGGCACTAACCAAGTCTGGAGCTGTGTACACATGgggCAAAGGAGACTACCACCGGCTGGGCCACGGCTCGGACGATCACGTGAGGCGACCGCGGCAGGTCCAGGGACTGCAGGGGAAGAAAGTGATCGCCATCGCCACCGGCTCACTGCACTGCGTCTGCTGCACTGAGGATGGAGAGGTGTACACGTGGGGAGACAACGACGAGGGCCAGTTGGGAGATGGCACCACCAACGCCATCCAGAGGCCCCGGCTCGTGGCCGCGCTGCAGGGGAAGAAGATCAACCGCGTGGCCTGTGGCTCGGCGCACACCCTGGCCTGGTCTACCAGCAAGCCTGCCAGCGCTGGCAAGCTGCCCGCTCAGGTTCCCATGGAGTACAATCACCTGCAGGAGATTCCCATCATTGCGCTGAGGAACCGGCTGCTGCTTCTGCACCACATCTCTGAGCTCTTCTGCCCCTGTATCCCCATGTTCGACCTGGAGGGCCGGCTGGGAGAGACGGGACAGGGCCCCTCCGTGGGCTTCGACACGCTCAGGGGCATATTGATCTCTCAGGGCAAGGAAGCTGCTTTCCGCAAGGTGGTTCAAGCCACCATGGTCCGGGATCGGCAGCACGGACCCGTGGTGGAGCTCAACAGGATACAGGTGAAACGCTCCAGGAGTAAAGGAGGTCTGGCAGGACCCGATGGCACCAAGTCTGTCTTCGGCCAGATGTGTGCCAAGATGAGCTCCTTCAGCCCAGACAGCCTGCTCCTCCCACACCGCGTCTGGAAGGTCAAGTTTGTAGGGGAGTCTGTCGATGACTGCGGGGGAGGCTACAGCGAGTCTATCGCGGAGATGTGCGAGGAGCTGCAGAACGGCCTGACTCCGCTGCTCATTGTCACCCCCAACGGCCGGGACGAGTCGGGGGCCAACCGGGACTGCTTCCTCCTGAACCCCGCCGCCAAGTCGCCGTTGCACATGACCATCCCATTGAGCCTCAACCTGGCTGAGCCCGTGTGGAAGCAGCTCGCCGGGATGAACCTGACAATTGCTGACCTCAGTGAGGTCGATAAAGACTTCATCCCTGGCCTGATGTACATCCGTGATAACGAGGCGACGGCGGAGGAATTTGAAGCCATGACCCTTCCATTCACTGTGCCAAATGCGAGTGGCCAAGACATCCAGCTGAGCTCCAAATACTCACACATAACCCTGGAGAACCGCGCGGAGTATGTGCGATTAGCAATAAATTACAGACTCCACGAGTTTGACGAGCAGATGTCGGCGGTCAGGGAGGGAATGGCTCGTGTCGTACCCGtgcctctcctgtctctcttcACTGGATACGAGCTGGAGACCATGGTGTGCGGAAGCCCAGACATCCCTCTGCACCTGCTGAAGTCAGTGGCCACGTACAAAGGCGTAGAGCCCACCTCCTCCCTGGTCCAGTGGTTCTGGGAGGTGATGGAGTCCTTTTCCAACACGGAGAGGTCTCTGTTCCTCCGGTTCGTGTGGGGCCGGACCCGACTGCCCAGGACCATCGCGGACTTCCGAGGCCGGGATTTCGTCGTTCAGGTCCTGGATAAATACAATCCCCCGGACCACTTCCTCCCAGAGTCGTACACCTGTTTCTTTCTGCTGAAGCTGCCCCGATACTCCTGCAAGCAGGTTCTGGAGGAGAAGCTGAAGTACGCCATTCACTTCTGCAAGTCTATCGACACGGACGACTACGCGCGCATTGCACTGACCGGGGAGCCGGCGGCGGACGACAGCAGCGAGGACTCGGACAACGAGGACGCCGATTCCTTCGCCTCCGATTCCACACAGGACTATTTAACCGGGCACTGA

Function

symbol description
herc2 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and pigmentation disease. Orthologous to human HERC2 (HECT and RLD domain containing E3 ubiquitin protein ligase 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase HERC2 isoform X4

GO: NA

KEGG:

id description
K10595 HERC2; E3 ubiquitin-protein ligase HERC2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014308 True 3210 mRNA 0.61 21 8386165 8401359

Neighbor

gene id symbol gene type direction distance location
AMCG00014307 LOC103356925 coding upstream 3881 8343001 ~ 8382284 (+)
AMCG00014306 cyfip1 coding upstream 64426 8263436 ~ 8321739 (+)
AMCG00014299 slc9a7,LOC107673530 coding upstream 135230 8204822 ~ 8250935 (+)
AMCG00014293 NA coding upstream 224885 8160408 ~ 8161280 (+)
AMCG00014294 NA coding upstream 254372 8128204 ~ 8131793 (+)
AMCG00014309 oca2,LOC107716962 coding downstream 77623 8478982 ~ 8507687 (+)
AMCG00014314 gabrb3,LOC107673538 coding downstream 393869 8795228 ~ 8824532 (+)
AMCG00014315 NA coding downstream 473808 8875167 ~ 8875832 (+)
AMCG00014313 atp10a coding downstream 542636 8943995 ~ 8972432 (+)
AMCG00014316 ube3a,LOC101472780 coding downstream 603141 9004500 ~ 9020633 (+)
G69023 NA non-coding upstream 249955 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 371162 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 511423 7874527 ~ 7874742 (+)
G68904 NA non-coding upstream 759761 7625988 ~ 7626404 (+)
G68771 NA non-coding upstream 1327846 7056707 ~ 7058319 (+)
G69206 NA non-coding downstream 332964 8734323 ~ 8735939 (+)
G69232 NA non-coding downstream 489227 8890586 ~ 8890834 (+)
G69326 NA non-coding downstream 965178 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 1500091 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 1573065 9974424 ~ 10028351 (+)
AMCG00014272 tbc1d23 other upstream 903605 7464503 ~ 7482560 (+)
G68848 NA other upstream 969571 7413640 ~ 7416594 (+)
G68830 NA other upstream 1036698 7346195 ~ 7349467 (+)
G68475 NA other upstream 3734201 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4254447 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 1601699 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1746620 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4844950 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 5253879 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5788205 14189564 ~ 14205014 (+)

Expression


Co-expression Network