AMCG00014321


Basic Information

Item Value
gene id AMCG00014321
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9089874 ~ 9130531 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014321
ATACAGCAGCATGGCGAGACGGGGGAGAACTGAGACTTTCCCTCATGTATCAATGGGGACAAAAACAACATGCCTCAGAGTCCTGcggttattatttattgcattttttcatGCGGCACAGGCCAACCAAGAAGCATTCATTCAATCAGATACCATTTTAGAGGTACTGCGGTTTGGTGAAGGAGGCATCTTGCAGaCAGAGTCTGAAATGGACCTCAGTTCATATCATCAAAAAAGTTCATCCCTACACCGAGGGAATTGCAGACCAATACAGTTCGAACCGCCGATGTTGGATTTCCATGAACAGCCGGTTGGGATGccaaaaatggaaaaagtttACTTGCACAATCCCAGTTCAGAAGAAACTATAATTTTAGTATCAATATCGGCAACAACGTCTCATTTTCATGCATCATTTTTTCAGAATAGGATCATTCCACCAGGAGGCAACACCTCTTTTGATGTAGTGTTCCTTGCACGAGTAGTGGGGAATGtggaaaatactttatttattaatacatctCATCATGGAGTGTTTACATACCAGGTGTTTGGTGTTGGCGTACCCAACCCCTACCGACTACGACCCTTCATTGGGGCAAGGGTTCCTGTAAATAGCAGCTTTTCACCGTTAATAAACATACACAACCCACACAGTGAACCACTACAGGTGGTTGAAATGTACTCAAGTGGGGGTGACCTTCACCTGGAGCTGCCTACAGGCCAGCAAGGTGGTACCCGAAAACTGTGGGAGATTCCACCTTTCGAAACAAAAGGTGTGATGAGGGCCAGCTTTTCATCGCGAGATGCCGATAATCACACAGCCTTCATcaggataaaaacaaatgccTCCAGTGAGGATGAGTTCATTATACTGCCAGTGGAGGTGGAGGTTACCACAGCACCTGGTATTTATTCGTCGATAGAGATGTTGGACTTTGGCACACTACGATCACAAGATCTTCCCAAACAATTAAATTTGCATCTTCTAAATTCAGGAATTAAAGATGTACCAATAACAagtATTAGACCAACACCATCAAATGAAGCTGTTACAATAGATTTTAAACCGGTCACATTAAAGGCAGGAGAAAGTAAATATACCAAAGTTGCAAGTATTAGTTTTGATGCTTCAAAAGCAAAAAGACCATCCCAGCTTTCAGGAAAAATAACCGTAAAAGCAAGAGAGAAAAGTTATTCTAAACTTGAAATTCCATACCAGGCTGAAGTTTTAGAGGGGTACCTTGGCTTTGACCACACAGCCACTCTGTTCCATATCAGAGACAGCCCCACAGATCCGGTGGAAAGGCCGATCTATCTAACCAACACCTTCAACTTTGCCATTCGCATCCATAATGTTTCGTTACCTGAAGAGGCAAAGACCATGTTCAATGTGCAGAATTTCACCAAACCAATCCTGATTCCCCCTCGTGAGTCCCGCTACATGTTTACACTTCACTTCACCCCTGCCAGACCATCTATCCACATAGACAGCAATATCCTGCTGGTCACCAATGCCTCGAAGTTTCATTTGCCTGTGAGGGCCTACACAGGTTTTTTAGAGCCGCTGGTTCTACCGCCAAGCCTGGAAGAACACATCCTAGACTTCAGCATACTCAGTGCCACTGAATCCAGTAACATTATATTTGTCGTCATGAACAGTAACCCTATTGagCTGGCAATTAAGTCATGGCAAGTCATAGGAGACAGCCTCTCTATAGAGCTGCTAAAATCagacaaaggaaacaaaaccgCTGTCCTGTCAAGAATTCGAGATCTACAAAATGGCACAGCGTCGGATCAGACAACTGTAATATTAGCTTCAGGCTACTATGCTGCATTTAGAGTCACACTCATAGCTAAGGAACTTGAAGGAATGTATGATGGAGCTATACAAATCACAACAGATTATGagATACTAACAATACCAGTGAAAGCTGTAATTGCAGTGGGCACATTAACCAGCTCACCAAAGCACATTGTTCTTCCAACTTCCTTTCCGGGAAAAATTGTGCATCAAAGTTTTAACATAATGAGTTCCTTCTCACAGAAGGTAAAACTCCAGCACATACGTTCTCTCACAGAGGATGTGCGATTTTATTACAAGAGATTCAAGAGTAATAAGGAAGAATTAGAGCCAAGAAGAAAATCCAAGgtagcaaatatttattttgatgctAGTTTGCAGTGTGGAGACCACTGTTATGTTGGATTACCTTTTATATCTAAATCTGAATCCAAACCACATGGGCTGATCATGCAGGAGGATATCTGGGATGCTGATGTGGATTTGCATCAAACGTTTCACAAGAGGTGGAGAGAACTGAAAGAGAGCTCTGGTCACGAGATTGAAGCGGAGTTTGAGGTGGATACTGATCTTCAGAAAAACGTTGAAGCCAGAATTACGGCCCAGATGATGTGGCCTTCAGTAATCAATACGGAGCGTCATATAATGTTCCCTCTTACAAACACCAACAGCTCCTCCGAGGAGGAGGTTGTTTTAGGAAACCCGGCTGATGTGCCAGTCTTTGTCCAGGTTCTTCCCTTAGCATTGTATCCCAACCCCTCAGCCTTCGCAGAAAAAATAGGGGAAAGgctcAGTTTGGGAAATATGGCAAACATTGATACCAGCACATTTGAATTCAGTGTTCACAGAAACCAAacaTCATTTCTTAAAAGTAGCACAGGGTTTGTAGAAGGATCTGCACGACCCATTGTTTACAACCTGCTGCTGTTGCCTGGAGAAGCCAAGTCCTTCACAGTGAAGTTTACTCCTGTCAGAAACCACACCGTTGCCTCGCTTATTGTCATCAGGAACAATCTTACTGTGGTGGATGCCATAGTAGTTCAGGGACAGGGAACAACAGAGAGTCTAAAGGTAGCTGGCAAGTCGCCTGGCCCAGGGAGTTCACTGAGATTCAAAATGACCGAGTCTTTGCTGAAGGACTGTTCAGAGAAAGTAAAATCTAAAGAGCCAAACTTCACTCTCAAGAGAACGTTCAAAGTTGAAAACACAGGACAACTTCCAATTTTCATCAGATCTACTGAAATCAGTGGCTATGCTTGTGAAGGATACGGATTTAAAGTTGTCAACTGTGAAGAATTTGCACTTAAACCAAATGCTTCAAGAGACATTGTTGTACTGTTCACACCAGATTTCACTGCTTCAAGAGTCATCCGCGAGTTAAAGCTTGTTACGGCAGGAGGCTCcgagtttgtttttgtattgaatgcATCACTTCCTTATCACATGTTGGCTACATGTGCTGAAGCCCTGCCCAGGCCTAACTGGGAGTTGGAACTGTACATCATAGTATCTTTGATTATGAGttccATGTTCCTTTTAGTGATCGCAACCGCCTACCTGGAAGCTCAAGGAATATGGGAACCGTTTAAGAGACGTCTGTCTTTTGAAGCATCGAGCACTCCCGTTGAGAGCGGGAGGCCATTTGATCTCAGGGAAATTGTAGGAATTTCATCCGATACAAACTTGAATGAATATGGAGATACAAACCACAACCTGACGAGAGGAATGTACAACTCGGGTGGGCCTTCATCGAGAGCCAACGCGGGAAACCATAGGCAGtgtaacacacacagcagcagaaacCCTATGGACTTTGAAGGCCTGAGAACCAGAATGAACAACCGGCCTATGCCACCCATCACACAACCTGGCAGCAAAGGCGGCAACGTTGGTTCAGACTCCAGCGCTGCCCCGTGTCAGATTAGCAACAGGAGGGTCCGGGCTGCCAAGcacaaccacaaccaccacGCGCACCACCAGCAGGCCCCAAGCCCCGTAGAGCAACAGACTCCGCAACCAGCAGTGCCTCAACAGCCACAGACGAGCGGCTGTCAAAAATCACACCCCGAAAGCAATGCAGGCAGACACAGCTCGGAGGACTCTGATTACACCAATCTCATGGAGGCCATGGACAAAGACCTGGAGCGGCCAGAGTCTCCTTCCACCCCTTCCACAGAAGTGTTCCAGGAACCCCCTTCTCCAGTGCCACAAAACAAAGTAAAAGGAAAAGTGCAACGTAAATCCAAGGCACAAAGGAAACgagaagaaaaagagaggagAACAAAGGGAAAGCCACAGGAAGACGAGCTCAAAGACTCCCTCGCAGACAATGATGACAGCTCCTCAACCACCACAGAAACATCTAACCCAGATATGGAGGCCAACATCAAGGAAGATCCAGAGAAGAGAGGACGCCCTTTCACACTTGACAAAGAGAAAGACGACAATCCGGTTTTTCACATGAAAcccaaaaacaagaaactgggCAGCACAAAGAAGGAGAACCAAACCGATGTGAAATCCAGTTCTTTGGAGCTCCCTTACACAACCCCCCTGGAAAGCACACAGCGCAAGAAGTTCACGTCGAAAAACCTTATGCACCAACCACTAACAAATGGCCCCAAATTAAGGAACCTACAGAAACCAAGAGCATCCTGTGGAAAGCCTGAAGACTGTAGACCATCTGCTTTGGGGAAGTTCCTGTCGAACGGGTCTGGCCAGGAGCTGGGAAACAGCAGCAGTTCAGAGGGGGAGAAAGACTCGCCTCCACCGGAGTGGGATTCGGTACCCATTCACAAAATCGGCTGCTCAAAGGACAGTCTTCAGCAGATCTCCATCCAGACCATGAATGCTGATGCTTTCTTAAAAAGACCCATCTCAGCCATATCCAGGACTTCTTCCCCACCGCCTACATCTTTCAACTTGGGAACCCGTGGATCTTACAGTAGTGTGGTGAATGCGAACAGTGAGACGGGCATCAAGAAATCCAGCGGAAACAAACACAAGCTGACAAAATCGACGTCTCTGCCTGGCAAGAATGGGAATCCTACGTTTGCGGCTGTTGCTGCAGGATATGACAAAAGCCCAGGTGGCAGCGGCCCAACGAAGGGCTCGGCCAGCAAAGCGGATGTCCTTGCAAAAATGACCGTTCCGAGCATGACCTCCTTCGAGAGCGATGGCTCTGAAAGTTCTGGATTGTGGAGTCCCATTGACAATTCTACCAGCCCTAGTTTCACATGTCTCAACTCCTTCTCTGCATTTGGACCCAATAACACCTTTAACCTCTCTGGAGtctTCGGTGTAACCTATCCTAAGACCTACAATCAAGACGCCCCGCAGAACTGGCCTGAGTTCACTCAAGTGTCTTCCTCCATCTGGGACTCTCCAGCCAGTGACTCACTGCCATCCTGGCCCACCAGCTCGGGCTCCCCCACGGCTCCCTCCACATCCATCCTGGGCAACACCAGCAGTCTCTGGTCTTCAACCACTCCGTTCAGCAACTCCATCTGGTCGACCAGCGTTGACAGCAACCTGCCCTCCTTCACTCCGACCACCACGACGGCCCTCACAGACCTGATGGGCAGCACCGAGCACCCCTGCGCCGCCCCCGCGCCCCCCTCCACGCCCACCACCGACATAGGCAGGACCTACAACCCCTGGAGCATGTGGCGCCCCACCCTCAGCCGCAGGAGCTCGGAGCCCTGGCCCAACCCCTCCACCTACCCCCCAGACAACGGCAACTGAGGAGCGTCGGCACTGTTTGGCCGGCCGACTCTCCCATTAAAACAGAGCATTGTATGCgatgtgcactttttttttttttttttttttttttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014321 True 5646 mRNA 0.47 41 9089874 9130531

Neighbor

gene id symbol gene type direction distance location
AMCG00014316 ube3a,LOC101472780 coding upstream 69241 9004500 ~ 9020633 (+)
AMCG00014313 atp10a coding upstream 117442 8943995 ~ 8972432 (+)
AMCG00014315 NA coding upstream 214042 8875167 ~ 8875832 (+)
AMCG00014314 gabrb3,LOC107673538 coding upstream 265342 8795228 ~ 8824532 (+)
AMCG00014309 oca2,LOC107716962 coding upstream 582187 8478982 ~ 8507687 (+)
AMCG00014323 LOC104949108 coding downstream 6500 9137031 ~ 9144426 (+)
AMCG00014322 nme7,LOC107732015,LOC107590639,LOC107659027 coding downstream 27213 9157744 ~ 9172062 (+)
AMCG00014324 NA coding downstream 128763 9259294 ~ 9273055 (+)
AMCG00014327 dcaf6 coding downstream 198159 9328690 ~ 9361176 (+)
AMCG00014329 NA coding downstream 312668 9443199 ~ 9458087 (+)
G69232 NA non-coding upstream 199040 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 353935 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 953664 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 1074871 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 1215132 7874527 ~ 7874742 (+)
G69326 NA non-coding downstream 236006 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 770919 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 843893 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 923960 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 924846 10055377 ~ 10055733 (+)
AMCG00014272 tbc1d23 other upstream 1607314 7464503 ~ 7482560 (+)
G68848 NA other upstream 1673280 7413640 ~ 7416594 (+)
G68830 NA other upstream 1740407 7346195 ~ 7349467 (+)
G68475 NA other upstream 4437910 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4958156 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 872527 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1017448 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4115778 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 4524707 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5059033 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_03622734_03659141 TMEM131 coding CI01000340 null 3621970 ~ 3659156 (-)