AMCG00014323 (LOC104949108)


Basic Information

Item Value
gene id AMCG00014323
gene name LOC104949108
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9137031 ~ 9144426 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014323
ATGCCTAACACTGCAGAAAGTCAAGGAGCAAACAACGCAGACAACAGTAACCAGGTGGCTACGAAGAAGCCTCCTAACCAAGATGGTGCCCAGAGCTTGTCGAATTCTTTCAGTAAAGGTGCTGTAGGTGCACCGAGAGCATCCAGTGGCGATGGCCAGTGTCCATGGACCTGCCCTGTGACGCATTCCCGAGAAAAGTTTTACACGGTCTGCTCAGACTACGCGCTGCTGAACCAGGCTGCGTCTGTATACGTGCCCCCCTACACCTCGGCAGAGAGCTCAGCCAGTGGACAAGACCGAGAGCCCACCTTTGGACAGTCGAGCACGAACAACTACTCTGAAGGGCAGGGGAGCAGTGCCAACCTACCGTACGAAGTGGACAGTGATGTGGAACCTATGTCTACCAGTGAAATCAAGCCAATGCTAGCTTGGGAGATTGACACAACAGATTTCGACACTGTGTTGACCAGAATGAAAAGCCGGACGAGTAAGTGGACCTTGCCTACTAGTGAAACTGGAGAcaagtcttttaaaatGTACTGCATTAGCCGTCCCCAGTACAAGACCTCCTGTGGAATTTCCTCTTTAGTTTCTTGCTGGAATTTCTTATACAGCACACTTGGAGCCGGGAGtcTCCCTCCCATCAACCAAGAGGAGGCTCTACACATCCTGGGCTTCCAGCCACCTTTTGAAGAGATCAAGTTTGGTCCCTTCACTGGAAATGCAACGCTAATGAGatgGTTCAGACAAATTAATGATAATTTCCGTGTTCGTGGATGttcttatatattgtataagcCCCATGGGAAGAATAAGACAGCGGGAGAAACTGCTGAAGGAGCTCTGTCGAAGCTCACTCAGGGCCTGAAGGACGATTCAATGGCCTATATCTACCACTGTCAGAATCACTACTTTTGTCCTGTGGGTTTCGAGGCCACTCCGCTGAAGGCAGCCAAGGCCTACAGATGGGCCGACATCGTGACCGATCTTAACACTCAGAATCCCGAATACCTTGACATCCGGCACACGGAGAGAGGGATACagtacaggaaaacaaaaaagGTGGGAGGGAACCTGCACTGTCTCATAGCCTTTCAAAGAGTTAACTGGCAAAAACTTGGTCCCTGGGCTTTAAATCTGGAGAACCTCCGGCATGACCTCCATCAGCAAACGCTGGAGCGCGGGGGGGGCGGGCTGGCCGACAGCGGGGAGGAGAAGCCAGCCGCTAAACATTCAGGACGTCTGGGGAGGTCACAGAGCGGGGGCTTTCAGAAAGAAACTGCATGGAAACGACTGTCTAACACCTACGAGTACAGGCACGGGGGGTCTCCGGAGAGTGACATCGATGAAGACGCAACTGATTAGACAACAGCAGTGCTTGCAGACACTCGGCGGTTTCTGTTTTGGAAGTGGTGTGCAATGCAATCTGGTCCGCATTCATATTACATTAAGTTCTACCtgggtctatatttatttattggcaaagGCAAATTTTAGTTTCCCAAAAGTTACCACCTTGTGTTCACAGAATGTCTAGAcactcattttgtgtttttttatttttttatttacacacagcacaactggtagaatacatgaaaaatttcctttaatattttcactcGCCAGCTTTGTGGAAAATATCCGGTTATGGGCCTATGTGTAGCCAAGCGTGTAATGTGTAAAGCACAGAATATGTATATGATGGTCAAACTATTGCAATCAGGACCACTTGTATTTGTATCAAAGGGCAGCATCAGGTACAAAACCAAATTCATACAAAAAAGGTGTGAATAGAGAATCACagcaaaatgcatgcatttgtgaCCGCTAGAACAATTTTAAGACTACAAAATGAGGACGCCTCTTTGCTGTTCTGTTGGTAAGAGCCCCTGCTCTGTGAGTGGAGGAGCTCTGTATTGCAGACATTATTGGTTTGAATATGGGCTTTCACTGCAGAGTGTGAGTGGGGTTCCCTGCAGGGCAGTGTGCAGTGGCTCGAGTGTACCAGATCGGCCTGGATTTCCTCCTAGTGTTGTGCAGTAGTGACTACGGTGTGGGTTTCCGGTGAGCCTGCAGTTGTGTTCATGAGCTGCCACAGCCTCTTGGGAATGTGGTGTGGAGTGGATCAGGTGTACAACATGTTTAAGGAGACTGAGGTGTGGCCTGCCTAAATCTCCTGCGTTGTGGCGAACCAAAATGCTCTACAGTTTGAATAAACATTGATTCCAAATTGtggggagtaaaaaaaaaaaaaaaaggcaattctAAATAAgatgtgtgtacatgtataatatataatatgtataatatataatataatatatatatatatatatataaattatataaaaaaagttgtCACCTAGGGTTTAATAAAATTATTCCACAGCATGCCCTTTGCTGATGGTAACCTGTTCGATCTGTTGAAGTCTTTTAATACACAGGTAAGACTACACCAGTAAGTGATACATCTTTATATTGATAAGCACAGAATTCTGCTCTATTCCTTagacacttaaaaataaatacaaataaagccaCTACCCAAAGATCAATCCCACAAGGTTCTTCTATTTCAGTTAAGATGTTAACATCTTTCATATGTTTGAATGAAATGCACAGACTGTAAAAAGATAATGCTTTTGTGCTCAAtgtgaaacacaaaaataaatgactgcatGTTTGCtaacatatactgtatacacttCTGGATGTGAACCTGTCCTGCCCTTTAAGTGGGAACTATAATTTGATATATGGTCTTCAGTTTCCCTGAAgttcatttaaatgtgattaaagtATGActgatgttttgcttttgaataaAGGTTTATACAAATTG

Function

NR:

description
PREDICTED: basic immunoglobulin-like variable motif-containing protein, partial

GO: NA

KEGG:

id description
K10846 ERCC5, XPG, RAD2; DNA excision repair protein ERCC-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014323 True 2845 mRNA 0.44 7 9137031 9144426

Neighbor

gene id symbol gene type direction distance location
AMCG00014321 NA coding upstream 6500 9089874 ~ 9130531 (+)
AMCG00014316 ube3a,LOC101472780 coding upstream 116398 9004500 ~ 9020633 (+)
AMCG00014313 atp10a coding upstream 164599 8943995 ~ 8972432 (+)
AMCG00014315 NA coding upstream 261199 8875167 ~ 8875832 (+)
AMCG00014314 gabrb3,LOC107673538 coding upstream 312499 8795228 ~ 8824532 (+)
AMCG00014322 nme7,LOC107732015,LOC107590639,LOC107659027 coding downstream 13318 9157744 ~ 9172062 (+)
AMCG00014324 NA coding downstream 114868 9259294 ~ 9273055 (+)
AMCG00014327 dcaf6 coding downstream 184264 9328690 ~ 9361176 (+)
AMCG00014329 NA coding downstream 298773 9443199 ~ 9458087 (+)
AMCG00014330 NA coding downstream 330983 9475409 ~ 9482055 (+)
G69232 NA non-coding upstream 246197 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 401092 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1000821 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 1122028 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 1262289 7874527 ~ 7874742 (+)
G69326 NA non-coding downstream 222111 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 757024 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 829998 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 910065 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 910951 10055377 ~ 10055733 (+)
AMCG00014272 tbc1d23 other upstream 1654471 7464503 ~ 7482560 (+)
G68848 NA other upstream 1720437 7413640 ~ 7416594 (+)
G68830 NA other upstream 1787564 7346195 ~ 7349467 (+)
G68475 NA other upstream 4485067 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5005313 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 858632 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1003553 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4101883 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 4510812 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5045138 14189564 ~ 14205014 (+)

Expression


Co-expression Network