AMCG00014327 (dcaf6)


Basic Information

Item Value
gene id AMCG00014327
gene name dcaf6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9328690 ~ 9361176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014327
tatcTCAGGAAGAAGAGAATTTGTCCAAAGATTAAAACTTGAAGCAACCCTTAATGTGCATGATGGTTGTgtaAATACAATATGCTGGAATGATACGGGAGAATACATTTTATCAGGATCTGATGATACCAACCTGGTTATAACCAACCCCTACAGCAGAAAGGTCAAAGCCACCATTCGTTCAGGGCACAGGGCAAACATATTCAGTGCCAAGTTTATGCCACACACCAATGATCAACAGATTATTTCCTGCTCAGGAGATGGAATCATATTctatacaaacacagaaaagagCCCAGAGGTCAACAGACAGTGCCAGTTCACCTGCCACTATGGGACAGCCTATGAGATCATGACAGTCCCAAATGACCCCTATACTTTCCTGTCTTGTGGAGAGGATGGGACTGTTCGGTGGTTCGATGTCCGAATGAAAACCAGCTGCACAAAAGAAGAATGTAAAGATGACATTCTTATTAATTGTCGGCGTGCTGCTACCTCGATCTCAATCTGTCCTTTGGTCCCCTATTACCTAGCAGTGGGTTGTTCAGACAGCTCTGTTAGAATATATGACCGGAGAATGCTAGGCACAAGAGCAACAGGCAACTACATGGGCCGAGGCACGACAGGGATGTGTGTGCGCTTTGTCCCGGCTCACCTCTCCAACAAGTCTTGTCGTGTGACGTCCCTGTGCTACAGTGGAGACGGCCAGGAGATCCTGGTCAGCTACTCTTCGGACTACATCTATCTGTTTGACCCCAAAGATGACCAGGCACGCGAGCTGAAGGGGCCttcagaggagaggagggaagaGCTGCGGCAGCCTCCGGTGAAGCGACTGAGACTACGGGGGGACTGGTCAGACACGGGGCCGAGGGCGCGCCCCGAGAGCGAGCGCGAGAGAGACGGAGAGCAGAGTCCCAATGTGTCCCTGATGCAGAGGATGTCAGACATGCTGTCTCGATGGTTTGAGGAGGCCAGTGAAGTGGCCCAGAGCAGCAGGGGTCGCCCACAGCCACGGCCTCGGGgCACCACAGCTCGCCCCGAAGTGGCCTCGGCCAACCCGGAGCCAGCCGCCCAGGAGCAGAGGTCGTCGGAGGGGTCAATGGAGGTCGAGGCTGCGGCTGAAGCGCTCCCCAAGTCCGCCTCTTCGTCCTCGTCCTCTGGCTCCTCTTCCACATTGACTGCTCCTGCCCCCTCTACCTCCTCGTCCACTGAGAGTCCCCCCTCCTCGTCCCTCCTCTCGTCCCCTGACGCCGAGCAGCGGAGCCAGCCTGCGGCCCCCTCGCAGCCAGAGACGGCACAGTCTGAGCCCAGGCGTCGTGGGGTACCGGTAAGTGTAGTGTGTAGGCGTTTACAGCGGCTGCTTCTGATGCCTGACCCTCCGGGACGGAACGAGCgcccgcccccccgccccgcccccGAGCGACCCTCTCCGGGGGCAGACGCACAGCCCACCCCCCCTGCAGGCAGTTCAGAAGGTGCCAGTCCCCGCACTGGGACAGGGGAGCCAGTTCTGAGTTTGCACTATAGCACCAAGGGCACCACGACCAGCACCATTAAACTGGACTTCACGGACGAGTGGAGCAGCACTGCCTCCAGCTCCAGAGGTAGTGGTGGCCACAGCAAGCCCGCAGAGCAAGAGGACTCCACGAAGATGCAGAGAAGAGAGGAGTCGGCACCGGAGAGCATGGAGGCAGCGTCTGCGCTGGCCGTACAGCCCGAGCCACAGGAAACTGGCAGTGTGGAGCAGGCTGGCGACCGCAGCACAGAAAAGGCCTCCTCCAGCACTCGGGACAGTCCTGTGACCGAGCCCCCCGCAGAACCACTCCCGGCTGGAGAGAGCGCCTCTTCCCCAGCGCTGGAGGCGCAGCAGGGGGCGGCTGTGGAAAACCCCAGCCAGTCGTGCCGGCGAACCGAACCGGCGGGAGAAAGCAGCGGGGAGCAGCCCTCGCGCAGCTACCAGGACTCGGATGACAGCGACGACGACCCCATTTTAATACCTTCAGCAAGGTATCGTGCAGGACAGGGGCAGAGGGACTGTGCAAATCTTCAGGATGGGGATTTCCCTATAGAGGCCCACATAAGTTTGATGCGCTCCGCTGCTGCCCGCATCCAGGAGCTCTtcaggaggaggaaggagaggcGCGAGATGGAGGAGAGCGAGACCCAGAACATCAGGAAGCCCACCGTCAAGATGGTCTACAAAGGCCATCGCAACTCCAGAACAATGatAAAAGAGTCCAGTTTCTGGGGGAATAACTTTGTGATGAGTGGCTCTGACTGTGGGCACATCTTTATCTGGGATCGGCACACAGCTGAGCATCTGATGCTGCTGGAGGCTGACAATCATGTGGTGAACTGCCTTCAGCCCCACCCCTTTGACCCCATTCTGGCTTCATCCGGAATAGACTATGATATCAAGATCTGGTCACCCCTGGAAGAGTCTCCAGCTTTCAACCGGAAGCTCGCCAAGGAGGTAATCACCCGTAACGAGCTGATGCTTGAAGAGACGAGAAACACAATCACAGTCCCGGCCTCTTTCATGCTGCGGATGCTGGCTTCACTAAATCACATTAGAGCAGACCATTCGGAGGGCGATCGCTCAGAAGGTTCTGGTCAAGAAAATGAGAACGAGGACGAAGAGTAGCCATTTTGATTTTTGCTACAAAGCACTTGAACATTGAGATTTGTACAAGTAAACTAGAATATTTTCCTTACAGAGCATTAGTGCAATTTTTagctttatttcttttctttttttccttttttctttttttaagaacataacTTTATTACTAATGTTTCCTTGTGGACGAATTGCAtttggagaaagagagaaaaaaaaaaaaaaaaaaaggtgtgaaTGCAAGCTGTGGCAATCTAACAGTGGAAATGAAAAAAGATTTGGATGACCGGCGCTGGCGGATATAAAGTGCAATATTCTTTTTCAAGAGAAAATGTTTGAGCTTGGATCAATGTTAAAGAGTGAGTTTTCATTAATGTAGCGAAGGGaaaagaaatcaaaactttgtatACTTGCTGTTGTgcatgcagatttaaaaaaaggataaataTGATGCTTTTCAAGTAAACAATTTTGTTGTTTAAAGAGTTAGTGACGTTTCATTATCAAGGATAATCAAGGATTCCCTCAGATGGGTCAGATCTCCCTGTCcgaaaaaaaacagagaaccAAAGATCAAAGATGAACTGTTACGTTCAGCTATTGAATGCCTTATTCACACTACAACACCACCTGTCAGCAAAGGAAGGTATCCTTTCTTTTGTGGCCTACAATTAAACCATTTGAAAGAGTGATATCCAACCACAATTTTCAAAATGGTCTTGTTCTGTTAGCATTCTCCTACTACTAGTAGAATCCTCTAAGGAGTTTCCTCTAAACTTCACAGGAGttacacaacaaaaaaaggcacaaatgatttgagtattttttaatacaatataaaaaaatgaggggaaaacagactaacaatattaaaatactgcttttaaaagcacaaaactAGAATAGTTTACATGACCTACTTGATTGAAGCCTCTCACTGCTTCCGTTTCTCAGTCCCAAGATGCAgtaacatttcatttcagcagtttccagaaaaaacaaatgtttaataaatccGATGAATACTATATTACTCAAATACAGTACTTTACAGCATGTGGCATCAGTAACCACGATAGGACAAGACCCCAATGGAGTCTTCTACGCCTAGTAAGATACCGGTTTGCACACAGGATCCaggaaacttattttaaaaccgAAAACACTGTGGTTATTAAAGCTTAAACAGTAATCATTTGTTGGGAACCGTAAATGGAAAGAAGTACAAATTCCCAATATTTTGGTCGGCCTTTGAAGAATTTGGAATGCTGACCTGCTTCCTTTCGAATTCCTGGATGAACTGATGACCTCGGCTCTATGAGGCAATTGAAAGTGTCCGAAGGAGCAAAACGCTGAATACTGCATCCTCAAGTGCAAACGTACCGACACACTTCACAGGTTCTACAGATAAAATTCAACTTGGtcttacattttcaacaccaCTGCATGGATAATATATTTCCTTATATATTCATGGCAACCGTACTaatttgtggtttaaaatgGTAGTACCTTATGCTCTACTTTAAGCTTCAATATACACATGATGTAGTTGCATATTTCACTTGAACACTTGTTGTTCTGGAAGTTAAAAATACTGCATATGATTCTCCAAAATAGAAACTTCTACCACATGTATGAATACATGAAAGTACTTTCATGTATGAATACATGAAAGTACTTTGTTCAATAGTAAGATCTGCACTTACTGATTTTATGAGTGGAGGGCGAgaatttcacacacattttcacacacgGGCTTACATCACGTCCAACTATAGTCTcggtttcaaatgttttattttcctcatgtaACAAAACTACAAAGATGATTCAGGATCTGAGCACCTCTACAGCACACGGAAATCTCCACAGAGGAAACTCATAATAGTGATTAATTTCAGGCACAGATTTCTTCGATTTCATCTTCGTCCTCCTCATTCCCGTCATTTACTATTCCTTCATCGATGCTCTCCAGCCTCAGTCTCTGCCCATTGAGGTACCTGGGCCCTCTCTGCGTGCCCCCTGTGATGCCCGGAGCGGTCCGCAACGCAAACAGGCTGCCCGGCAGGGTCTCGTCCCCAAACAACAGGAGCTTGGCATCAGTCTCGATGGCTTTGGCAAGGCAGGAGGCGTAGCTGTCCAGGGACTTATGAATCTCTGCCTTCACTTGGACTGTGGAAGGAGTGgaattttctaaaaaaaaaaaaagaaattagcTTTAGAATTCAGATTGAGTAGctgacatatttattattaaatcgCTTAAAAAGGAAATTTTCTATAGCCATAACATGAATAATTATTTGACACACATGTATAAGGCAGACAGTAACAGCTCTGCCTTCATCTGAAATGCCTCTGGTATGAATTTCCACACAGGAATATCCATATTTCTTGAATCGTGAGTAGAGGGTGTCTTCAGGCAGTCGGGCAACTAATGGAGATACCTTTGGAGTGTTGCTCCAGCTGGTCCTCAAAGGTCACCGAGCTCCGCCGCTTGCCGGAGGCCCCCCCGTGGTGCGAGGCATGCGTGCCGTCTGACGTGAAGTCATCCAGCAACATGAGGTCGGTACCTGCAAGAAATACACTCTTTAGATGAGACCAGACACCAGAGCCTGTTTATTCAGGTGCCAGTGAAAGGTGCCGACACATTCATTCTGGTTTACTCATAATCACAGGTAGCCATTTTCCTTAAAGTTAATAGCAAGGCTACACATTCTCCACATCCCATTTACAGTCATAAACCCGACCCTACTATTTACACATTCTTCAGCATGATCTGTACAGATTGATTCTGAATGAATTCTGCTCAAAACAGAATACAGTGAACACTGCAGTATCACAATACAGGAGAGGACTGCAGCATTGAAGCAGTGAGGCTGACAAATGACCTCCGATAGCCAAGCATAACAAAGGCCCCGAGGCTACTGCCATGAAACCGACAAGTCTGAGCTCCTGCAGTGATTCAAAGAAATGTTTGCCTTAACAAGCATAGATGCATGAGAGTTGTGATGAAGTGGATTCGAAGGTCACAGTTTTCAGATTCCCTAAAGGGGAGGATCCCTTTTGCATAACTAAGTGTTCTGACAACCAAGAACCTTTATACTCTGTAaagatatattttgaaatgtctcaTTGCTATAACTTCATCAATAAAAGAAATTACATGATA

Function

symbol description
dcaf6 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF6 (DDB1 and CUL4 associated factor 6).

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 6 isoform X4

GO: NA

KEGG:

id description
K11795 DCAF6, IQWD1, NRIP, ARCAP; DDB1- and CUL4-associated factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014327 True 5801 mRNA 0.47 19 9328690 9361176

Neighbor

gene id symbol gene type direction distance location
AMCG00014324 NA coding upstream 55635 9259294 ~ 9273055 (+)
AMCG00014322 nme7,LOC107732015,LOC107590639,LOC107659027 coding upstream 156628 9157744 ~ 9172062 (+)
AMCG00014323 LOC104949108 coding upstream 184264 9137031 ~ 9144426 (+)
AMCG00014321 NA coding upstream 198159 9089874 ~ 9130531 (+)
AMCG00014316 ube3a,LOC101472780 coding upstream 308057 9004500 ~ 9020633 (+)
AMCG00014329 NA coding downstream 82023 9443199 ~ 9458087 (+)
AMCG00014330 NA coding downstream 114233 9475409 ~ 9482055 (+)
AMCG00014336 NA coding downstream 442781 9803957 ~ 9808880 (+)
AMCG00014337 NA coding downstream 479847 9841023 ~ 9908262 (+)
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding downstream 552949 9914125 ~ 9916789 (+)
G69232 NA non-coding upstream 437856 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 592751 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1192480 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 1313687 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 1453948 7874527 ~ 7874742 (+)
G69326 NA non-coding downstream 5361 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 540274 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 613248 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 693315 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 694201 10055377 ~ 10055733 (+)
AMCG00014272 tbc1d23 other upstream 1846130 7464503 ~ 7482560 (+)
G68848 NA other upstream 1912096 7413640 ~ 7416594 (+)
G68830 NA other upstream 1979223 7346195 ~ 7349467 (+)
G68475 NA other upstream 4676726 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5196972 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 641882 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 786803 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3885133 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 4294062 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4828388 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location