AMCG00014333 (inpp4a)



Basic Information


Item Value
gene id AMCG00014333
gene name inpp4a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9373456 ~ 9418236 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014333
TGGATTTATAGCTTTAGCCCTTTTTCCTCCTACCGATCGCTTGAAACGATGCTTCAGTGCATACGGATATGAGTACCTCCGCGTGGCTTTCACTATTCGCACTCAACGAATCGGCCTCGCTGTCAGGAGCTGTTCACGCCtccctacacacacagacaccactCCCTCCGAGCAGAGCGAATTGACAGCAGAGACTGAAGAGGACCGGCAGGCACGGCATCCCCCAGCTCCCGTGAAGGTCTGCCCGCTACCGGAGCTGGCCCCCCTCATGACAAGATGTCCGTAAGAGAGCGCAGCCCCCGCCACCGGCCATGGTCCGTGTACCGCGCCAACACCTTCGACCTCTCCTCAGAGATGCTGGGCCTCACTCTGGCAGGCAACAGCCAAGATCCAGACGAGCCAGTTTTAGAGTTTAGTGTTGCTTGCAGTGAATTAATCACACCAGCACTGGATCGAAAACCAAATAGTTTTGTTGCAGTCAGTGTCACTACACCACCCCAAGCATTCTGGACAAAACATGCCCAGACAGAGATAATAGAGGGCACAAGTAACCCCATATTCCTGAGCAGCATTGCCTTCTTCCAGGACTCGCTCATCAACCAGCAGACCCAGGTGAAGCTCTCTGTGTATGATGTCAAGGACCGGTCTCAGGGCACGATGTATTTGCTGGGGTCTGCCATGTTCCCAGTGAAAGAACTATTGCAAGAGAAGCAACACCGGCTACACTTAATGCTAAGATCTGCTGAGAATGAGCGAGTGGGCAACATCACCATCATAGCCTGGCAGATGGAGGAGAAAAGAGACCAAAGGGCTCCGGTGCCAAGGCTGCCTGATACCATCAATGGAAGGATGGTACTCCCGGTTGATGAAAGCCTGACAGAGTCTTTAGGAATCAGAGCAAAATATGCGTCTTTGTGCAAGGATACATTATTGAAATCAGTGTTCGGGGGCACCATGAGCCGAATGTATCGCTTCCCCACCACGGACGGCAATCACCTGCGCATCCTGGAGCAGATGGCGGAGAGCGTGCTTTCTCTGAATATACCTCGCCAGTTTGTCAAGCTCCTTCTCGAGGAAGACGCTGCTAGAGTCTgtgagctggaggagctggggGAACTGTCTCCCTGCTGGGAGAGCTTGCGGCGGCAGATTGTCACTCAATACCAAACCATCATCCTCACCTACCAGGAGACCCTGACAGACCTCCACCAGTACAAAGGGCCCTCCTTCAAAGCCAGCAATCTGAAAGCAGAAAAGAAGCTAGAATTCATGCCAACAAACCTCCATATCCAGAGGATGAGAGTGCAGGATGAATCTGGCTCGGATCACACATATGACATTGTGACGATCGGAGCTCCAGCCGCACACTGCCAGGGCTTCAAAAACAGTGGCCTCCGGAAGCTCATCCACAAGTTTGAAGAGGCCAAAAAGCACGCTGTGTCCAGCTCGCAGTCCATTGTCTACATCCCTCAGGACATTGTCAGAGCCAAGGAGATCATCGCACACATCAACACCCTGAAGACACAGGTCAGCTACTACGCCGAGAGGCTCTCCAGAGCAGCCAAGGATCGCTCTGCCAATGGGCTGGAGAGGACCCTTGCCATCCTGGCAGACAAGACCAGGCAGCTGGTTACAGTGTGCGACTGCAAGCTTCTGGCAAATGCGATCCAGGCCTTGAACGCGGCTCGACCGGAGTACATCGCCTCGAAAGCTTCACCCACGGCTGGGGACGTCGATCAGGTGATGCTGCGGAATGACCAGGACACGCTGGTGGCCAAGTGGACTGGGAAGAACAGCCGCTCGTCATTGCATGTCAACTGGCACGAGGAGGAATGGGAGAAAGTGTGGCTCAATGTTGACAAGAGCCTGGAGTGCATCATTCAGCGTGTGGACAAGCTGCTGCAGAAAGACCGGCTGCAGAGTGACAGCTGTGAGGACGTGTTCCAGTGCGACCTCAGCAGCTCCAGCAAGAAAGATTGCAGCTCCCCCGCTGAGGAGGCCACCCCAGGGGAGTGGAGTGAAGCCTTGTATCCTTTGCTCACAACTCTCACCGAATGTGTAGCTATGATGAGCGATAAAGCTAAGAAATCGATGGTGTTCCTGCTAATGCAAGATACCGCACCAACCATCGCGATGGACCTCAGCCTGCAGTATCGCAGGGATGTGGTCTTCTGTCAGACGctgaCTGCCCTTATTTGCGGATTTATCATCAAGCTGAGAAATTGCCTTCGTGACGATGGCTTCTTACGTCAACTTTATACCATTGGCCTCCTTGCGCAGTTTGAGAGTCTACTAAGTACctatgGGGAGGAACTGGCCATGCTGGAGGACATGAGCGTCGGAATCTTGGACCTGAGAAATGTGACGTTCAAGGTGACCCAGGCTACCTCCAGCTCCTCGATGGACATGTTGCCAGTCATCACAGGGAACAGAGACGGGTTTAATGTGAGGATTCCTCTGCCGGGGACCATGTTTGATGCGCTGCCACGGGAGATCCAGAATGGGATGCTGCTGAGAGTCCAGCCCGTGCTCTTTAACGTGGGAATCAACGAACAGCAAACCCTCGCTGAGAAGTTTGGAGACACGTCATTGCAAGAAATCATTAACATGGAGAGCCTGGCTCGCCTGAATTCCTATTACGAACAGTTCAAAGAAGTTTTACCTGAAGATTGTCTACCTCGATCACGCAGTCAGACGTGCTTGCCTGAACTACTGAGATTCCTGGGCCAGAATGTCCatATCTGCCGTCGCCTAAATGGGGTTCGCTTCACGAGTTGTAAAAGTGCCAAGGACAGGACGGCCATGTCTGTGACCCTGGAGCAGTGTCTCATTCTGCAGCATGAGCACGGCATGGCCCCCCAGGTCTTCACACAGGCGCTGGACTGCATGCGGAGTGAGGGTTGTCGGCGGGAAAACACCATGAAGAATGTGGGATGTCGCAAGTATGCTTTTAACACTCTGCAGTTGAAGGCTTTTCCAAAACATTACAGGCCTCCGGAGGGAACCTATGGGAAGGTTGAGACTTGATAGGACGCctcagacacattttaaaagcaacaaatgCCCGTTTGTGAAATGCAGTTCACTGTTAAAATGATAGGTGTGAAAGTTCTGTGatctatatatactgtatatataatttaaatacaaccaCACTCACCTGCAACTCAACAAGACCAGTAGAAACATATCAGCAAGTCTGTTTTAAGGTCTCAACACAATAAGTCATTCCACTGTCCATGGAAGAATATACTGTAGGTAGAGCATGCTTTCTCAGATTTAGAGGACAAAAAATAACCCTTGACTGAATACCAGTTTAGTGTATGTTCGCACATTGACACAACAGTCCTTTcataagaaaaagaaaccagCATTGTGGTTGTCGAGGAAAACACATTCATGACAATGCACCCACATTAGTGGATAATCATAGACATATCGAATGCTAACATATCGAATGCTTGGGTAGCTCTGCAGAAACAATGCTTTATGTATGAAGATCTAGGATCGCACTGAGATTAGCAGCACAATCATATCACAGGGTTTTGCATCAATTATCATTGAGAGTTTACACACCACCGTCTGTAAAGTACATGCAGTGCAACTATTTCAGGTTAATAGTTATGGATACTTTTGTACGTAAGCTGCTTTCATTTTGGTAGATGCAGTAACGTGTAGTGTCCAATATATCCAAATACAATTAATGAGaatatttctgtgtatttgtgtgtatatatgtgtatgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtatatatatgtatatgtgtgtgtat

Function


symbol description
inpp4a Predicted to enable phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity. Predicted to be involved in inositol phosphate metabolic process; phosphatidylinositol biosynthetic process; and signal transduction. Located in cytoplasm; nuclear membrane; and nucleoplasm.

NR:

description
PREDICTED: type I inositol 3,4-bisphosphate 4-phosphatase isoform X9

GO: NA

KEGG:

id description
K01109 INPP4; inositol polyphosphate-4-phosphatase

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014333 True 3799 mRNA 0.50 25 9373456 9418236

Neighbor


gene id symbol gene type direction distance location
AMCG00014331 NA coding downstream 6420 9358847 ~ 9367036 (-)
AMCG00014325 NA coding downstream 144829 9216869 ~ 9228627 (-)
AMCG00014326 NA coding downstream 226119 9144538 ~ 9147337 (-)
AMCG00014318 NA coding downstream 238069 9131415 ~ 9135387 (-)
AMCG00014320 NA coding downstream 288243 9061033 ~ 9085213 (-)
AMCG00014332 NA coding upstream 49088 9467324 ~ 9472259 (-)
AMCG00014341 fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730 coding upstream 609416 10027652 ~ 10043566 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding upstream 774393 10192629 ~ 10197751 (-)
AMCG00014348 NA coding upstream 822770 10241006 ~ 10256375 (-)
AMCG00014349 NA coding upstream 881767 10300003 ~ 10301361 (-)
G69352 dcaf6 non-coding downstream 18218 9349788 ~ 9355238 (-)
G69250 NA non-coding downstream 374830 8998426 ~ 8998626 (-)
G69233 NA non-coding downstream 482617 8890556 ~ 8890839 (-)
G69086 NA non-coding downstream 1122895 8226494 ~ 8250561 (-)
G68981 NA non-coding downstream 1499098 7874153 ~ 7874358 (-)
G69372 NA non-coding upstream 171588 9589824 ~ 9590081 (-)
G69373 NA non-coding upstream 172940 9591176 ~ 9591381 (-)
G69382 NA non-coding upstream 476490 9894726 ~ 9895580 (-)
G69391 NA non-coding upstream 483121 9901357 ~ 9912021 (-)
G69394 NA non-coding upstream 498609 9916845 ~ 9917335 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 56289 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 989232 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 1214866 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 1234330 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 1950165 7413729 ~ 7423291 (-)
AMCG00014340 NA other upstream 582898 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 639861 10058097 ~ 10061230 (-)
G69537 NA other upstream 1378480 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 1706793 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 2241775 11660011 ~ 11667537 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G175641 NA non-coding CI01000037 null 2031546 ~ 2060079 (+)