AMCG00014334 (LOC107748535,LOC108247996,LOC104928562,LOC103473625)


Basic Information

Item Value
gene id AMCG00014334
gene name LOC107748535,LOC108247996,LOC104928562,LOC103473625
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9914125 ~ 9916789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014334
ATGGCCACGGCGGCTTCCAACCCTTACCTGCCCAGCAACAGTATCCTCTCATCGGGTTCAATTGTGCATTCTGATTCGGGAGGGGGTGGCATGCAACCTGGCAGTGCCGCCGTTACCTCGGTGTCTGCCGGGTACAGAGGAGACCCCTCGGCTAAGATGGTACAGAGCGACTTCATGCAGGGAGCTATGGCGGCAAGCAACGGGGGCCATATGTTGAGCCATGCCCACCAGTGGGTAACAACTCTGCCTCACgccgccgctgctgctgctgcggccgCCGTGGCAGCAGCAGAAGCCGGATCGCCTTGGTCGTCCAGCCCCGTCGGGATGACGGGAAGcccacaacagcagcagcaggacgTCAAAAACAATTCGGGCAGAGACGATCTGCACACGGGGACTGCGCTGCACCACAGGCCCCCTCACCTGGGTCCCCACCAGAGTCACCCAGGGGCTTGGGGGGGGACCACCGCTTCTCACATCCCTTCAATAGCCGggggacagcagcagcagtctctCATATACTCGCAGCCCGGAGGGTTCACGGTGAACGGGATGCTAAGCCCGCCGCCAGGGAGTCAGAGTCTGGTGCACCCCGGTTTGCTGAGCTTCAAGAACATGTGCAAACTCAAGCCCCTGCTCAATAAATGGCTGGAGGAAGCCGACTCGTCCACCGGGAGCCCGACCAGCATCGACAAGATAGCGGCGCAGGGCAGGAAGCGAAAGAAGCGCACCTCCATCGAGGTCAGCGTCAAGGGGGCATTGGAGAGTCACTTCTTGAAGTGCCCCAAACCCTCGGCCCAGGAGATAACCTCTCTAGCGGACAGTTTGCAGCTGGAGAAAGAAGTGGTCAGAGTTTGGTTTTGCAACCGGAggcagaaagagaaaaggatgACCCCCCCGGGAGTGCAGCAGACGCCGGACGAGGTGTACTCTCAGGTCGGCAATGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAATCAGCCGAGTGACCAGAGGGTGACAACTACAAGTTCATTCCACCAGGTAATCTTAGCGCACTAACAACATCAACACAAAACCCCATTCAAGTGTAAGAAATGATATCTTTCTAGCtatctatattttttctgtatttggtaTGTTTGAGACAACAGAAGCAGGCATTAAAGCAAGCACTAAACAAAAATGGACTGTAAAAGTGAAGGAGtccaacagaaacaaaaatgtgacaacAACACAATGAAGAGGAGTTGGGATCCACAAAGCTGCAAACGTGTTTTAAGAAGAGGACTGCATGGTTTAatataaaggagaaaaaagggaTTGGGGTTGTTAGACACTTTCTTAAGACTTTGGCCCTATTGATCTCAAAGATCACATCTTTTgaagattgtattttattttgtggacCGTTCCCCGTAAatggattttttaaaaacaaaacaaaaaagactgaTCTGCAGCTGCACTTACCTGAAATCCTCCTCTGCGAAACCCGGTGCCAAGTGGGACTGAATGGGTGCTGTGGATGTAACTAAATAATGCTGCCATTTcccagcagtgtttttttggtAGGTTTTAATAAACAGACTTTCAAAGCTGGCAATATAGATTCATTAGATCAGATTCTGAtcttaaatatttactttatatttttcatcaaaatgacttgttttaatattttattcagaataACTATGGACTGTTACAAAcggtaatttattttttccccagatcttgtataacgtgtttttttctttggtttgtttatttcgttgtccttttttttttttttttattattattattttcaaacgAGCACAAATCAAAAGAAACTGATGCTATGGACAGTTGTTAGGTAATAAGGGTATATTTTGATGTGATAATttgattgtaatttaatttgagtaGTATTCCGTAAGAGAtgattgagaaaataaatttgTTAGAATGAAATGCCGTGGTTGTGTGTGGTGCATATGATAgtgcagatttatattttaaatacagaattacactaaaatttatatttttattgcaattCTTATTAAAACgctaaatatataatgaaaacttGTGTTTTCAATCATGCTATGTCAATTGTGt

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: POU domain, class 3, transcription factor 3-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014334 True 2106 mRNA 0.45 3 9914125 9916789

Neighbor

gene id symbol gene type direction distance location
AMCG00014337 NA coding upstream 5863 9841023 ~ 9908262 (+)
AMCG00014336 NA coding upstream 105245 9803957 ~ 9808880 (+)
AMCG00014330 NA coding upstream 432070 9475409 ~ 9482055 (+)
AMCG00014329 NA coding upstream 456038 9443199 ~ 9458087 (+)
AMCG00014327 dcaf6 coding upstream 552949 9328690 ~ 9361176 (+)
AMCG00014335 NA coding downstream 42444 9959233 ~ 9981593 (+)
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding downstream 76884 9993673 ~ 9994671 (+)
AMCG00014343 NA coding downstream 98714 10015503 ~ 10071601 (+)
AMCG00014342 nck2b coding downstream 208365 10125154 ~ 10145702 (+)
AMCG00014344 NA coding downstream 239676 10156465 ~ 10162165 (+)
G69384 NA non-coding upstream 4077 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 537775 9366537 ~ 9376350 (+)
G69232 NA non-coding upstream 1023291 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 1178186 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1777915 8133288 ~ 8136210 (+)
G69400 NA non-coding downstream 57635 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 137702 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 138588 10055377 ~ 10055733 (+)
G69457 NA non-coding downstream 306882 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 576358 10493147 ~ 10493396 (+)
AMCG00014272 tbc1d23 other upstream 2431565 7464503 ~ 7482560 (+)
G68848 NA other upstream 2497531 7413640 ~ 7416594 (+)
G68830 NA other upstream 2564658 7346195 ~ 7349467 (+)
G68475 NA other upstream 5262161 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5782407 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 86269 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 231190 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3329520 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3738449 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4272775 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031927 pou3f3b coding NC_007117.7 CM002890.2 14949950 ~ 14957388 (+)
grasscarp (Ctenopharyngodon idella) CI01000024_00913269_00915063 POU3F3, POU3F3A, POU3F3B coding CI01000024 null 912852 ~ 915565 (-)