AMCG00014335


Basic Information

Item Value
gene id AMCG00014335
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9959233 ~ 9981593 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014335
TTTTATCATCACCTGTAATAAAGACCCCGGCGTTGGAAAGCAGCCAAACCAGTCGCTCTCCCTTCGGCTTGGTTTCGAGGGGAAGATTTAGCATCTGACGTCACCGCTGCTCACGTATACGTGTGAACGTGAGTTGGCGTACGCTTGCGCCTGCGCGTTGTGGATTCATAGTGTCAAACATGGCTGCTTCCAGTGGCAGAGTCGTGAGGTCCTTGCTGAGGGGATGCTGTGGCTGTTACTCTGTGATAGCACCGTCTGCCAGAACAACTATAACTCGACAAAATCTCGCCTTTCCCGTGCTGGCACGGCTAGTGTACACCACCTCAACACTTCAGAGAAGGAACATAGCTGCGGAAGGTCCTGAGAAGTACACCGATGAGTTCATCAAGAAGCAGATCGAGGAGTTTAATATTGGGAAAAGGCACCTGGCCAACATGATGGGCGAAGATCCGGAAACGTTCACACAGGAAGACATTGACAGGAGCATTTCCTACCTTTTCCCTTCTGGGCTTTTTGAGAAAAAGGCTAGACCACTTATGAAGCATCCAGACGATATATTTCCAAAGCAGCGAGCTGTCCAATGGGGAAAAGATGGGCGtccttttcatttccttttctacACCGGAAAGCAGTCTTATTACTCACTCATGCatGACACGTATGGAAAGTTCCTAGAAATTGAAAAGTACCAAGATCGAATGAGAGCAAAGGGGCTTTTCTCAGAGGTTACTAAGGAAGTCACCCTTGCTGACAGCCGGTGGCTTTCCAAGGAGGAACTCGAGGAAATTCTTGTGGAACCCATTTCTGATCATGATtacacTCGTTTTGTCCAGCTGCTGGAGCGGATCCTGGCACAGCCATACTGCTCTATAGAGGAGGAATACATTCACAAGTTCAGGAGGCAATTGGAGGTGCAATCCAAGAAACAGAAGATTGAGCCGCTGCAGTATGACACTGACGGCATCGCCTTCAGCATGGGAGAAGGCCGAAGAAAGACTGCCACTGCTACCACAGTTGTTCGAGACAATGGCTTAGGGAAAATCTCTATCAATGGAGTTGATTACCTCCAGTATTTCCCAGTTCTCCAGGACAGGGAACAGCTGATGTTCCCCCTGCAGTTTCTGGGCCGGCTGGGCAGACATGACCTACAGTGCACTGTCACTGGGGGTGGGAGGTCTGCCCAGGCAGGGGCCCTGCGATTGGCCATCTCACGAGCTCTGCTGAGCTTTGTGGAGGAGAGTGAGGTGGAGACAATGAGGCAGGCTGGGCTGTTGACTTCTGACCCCCGGGTGAAGGAGCGGAAGAAGCCTGGGCAGGAGGGAGCGCGCAAGAAATTCACCTGGAAGAAGCGATAGGGCTGTGTGGACAAGCTGTCAGTCTCGACACTCAAGAGGTCCACATGCACACCTTCTAACAAtctgtggaaataaatatatttaaattaattctggaTACAGTCTGTTTACTGAAAACGATGCAATGATGAGTTCATTAACCCGTATTCCCCAACGTATGTCACGTGTTTCCAAATCATGAGAATTCACTAGAATAAATGTACGGTGTCTATGGCATTTGCAAGGTAGTTTCTTTTATAAATAAGCCATATGTTTCTTTTCCCTCACAATTTCCCAATTAACAAATGTAAACCTTTTTATCAGTTGGATATGCAAGGAGGGAAAAAGCAGTGTGAACACACTGTGAAGGGGAGGCAGATAATACCGCCAGGTGCCGATGTTTGTAATGACCTCAGTCAGTAGAAATGTTAGTATTAAAGTAgagttaaacacattttgacattacaatttaaaatcgattctgtactgattgtattactgcagttttttaataatgtaaaatgtttctcaTGTAAACTGTAACTTGAcctggatatgggtgtctgctaacTTACATTACACATAGAAAGATAAATAACCATCAAAAACATAGACaatcagtgtatttcatttgat

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02996 RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014335 True 1970 mRNA 0.46 11 9959233 9981593

Neighbor

gene id symbol gene type direction distance location
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding upstream 42444 9914125 ~ 9916789 (+)
AMCG00014337 NA coding upstream 50971 9841023 ~ 9908262 (+)
AMCG00014336 NA coding upstream 150353 9803957 ~ 9808880 (+)
AMCG00014330 NA coding upstream 477178 9475409 ~ 9482055 (+)
AMCG00014329 NA coding upstream 501146 9443199 ~ 9458087 (+)
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding downstream 12080 9993673 ~ 9994671 (+)
AMCG00014343 NA coding downstream 33910 10015503 ~ 10071601 (+)
AMCG00014342 nck2b coding downstream 143561 10125154 ~ 10145702 (+)
AMCG00014344 NA coding downstream 174872 10156465 ~ 10162165 (+)
AMCG00014352 NA coding downstream 247407 10229000 ~ 10242261 (+)
G69384 NA non-coding upstream 49185 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 582883 9366537 ~ 9376350 (+)
G69232 NA non-coding upstream 1068399 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 1223294 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1823023 8133288 ~ 8136210 (+)
G69428 NA non-coding downstream 72898 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 73784 10055377 ~ 10055733 (+)
G69457 NA non-coding downstream 242078 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 511554 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 855611 10837204 ~ 10838230 (+)
AMCG00014272 tbc1d23 other upstream 2476673 7464503 ~ 7482560 (+)
G68848 NA other upstream 2542639 7413640 ~ 7416594 (+)
G68830 NA other upstream 2609766 7346195 ~ 7349467 (+)
G68475 NA other upstream 5307269 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5827515 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 21465 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 166386 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3264716 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3673645 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4207971 14189564 ~ 14205014 (+)

Expression


Co-expression Network