AMCG00014339 (dph3,LOC105022091,LOC106574460)


Basic Information

Item Value
gene id AMCG00014339
gene name dph3,LOC105022091,LOC106574460
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10058097 ~ 10061230 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014339
GACTCTATACGGTACTAAACTAgaattgaatgattgattggAAAGGGAACATGCTCTCACCGGGTCAGGAAAAACCACAagtcccacaatgcactgcgaAATGCCGGCCAAACGAACTACACGTCGTAAGAAGGCACACGTGGAATCCGTGCGACGGCGGAGCTCGTGTTTCTGGCATGtgctttttgtaaatatatttagaatataaacATTACAATGTCCGTGTTTCACGACGAAGTAGAGATAGAAGATTTTGAATATGACGAAGAAACGGAGACTTACTATTTTCCCTGTCCGTGTGGGGATAAATTTGCTATAACTAAAGAAGACCTAGAAAATGGGGAGGAAGTAGCCACCTGCCCAAGCTGTTCATTGATAGTCAAAGTAATTTATGATAAGGAGGAATTCATGTCTGGGGAAATCGTAGAAGCTCCTGCAACAAACAAAGTGGAGCTCGTGAAGAGCTCGTGAAGAGCTGATGGCGTACAGCGAACCGTCACTGACGAAATACTTACACTCCCGGAGGCAATCCTCTCCGATTGCTTTGGATCAGCAGGGGACAGATGCTACATCTCTGTAGACCTGATCTCACAGACTGTAAAGCAGGAACATTAAATATCCTTGGCTTGATGGACAGAAGATGTATAAATCATCAGAACTGCTATCCCAGACACTATAGAGGACAATACATGCCAATCAATTGGAGAAACAATTGAGTGTTGCTTTAAGCTTTTTTTACCATAATTTATTTAACGagtaaagcaattaaaatatgcaaaacttacttgttttgtttatgattgCATGGGAAAATCATCTGCAGTACTTCTTTGCAAGTATTTTCTTGcattaacaattttttttacaattgtgAGCAAAACATTCTGTTCCAAGTGTGTCAGTAGTTCTTCACATTATAGGgagattaaatataaatattgaagcTAAAAGGAAATTGTAATTAAACCTGCTTTGGAATGGCATGACTGGCATTACTGTAACTTGGTTCAACTatctcattttaattaacttaagcCAGTTTGCTAAGTTAATGGAAACTAGTCACGAATAGAAGTAATTTGTTTACTGTGAATAATCTCAGAATTAGAGGGGCCCAGCACACTCTGTGCTCTCTGAACTGACCACGGCAGTCAAGTTGcagatgacaagaaaaaaacatattggcCCATGGCTGGTTTAGCTACCATGCTTGCAAAAGAGTATGTGTAGGAAACTACTCTCCGAATCTCTCTCAACTTACTATTTCCCGATGAGTTCGTCATCTTAACAAAAAACACccgaagacctgcagcttcaaattcaagaactctcgAATGAAAGCAAGATAACTGGACTGAAAATGACCTTGGATAAAatcaaagtcatgtttaacagctttgttaaatcttaAGAAAGTTGAGGTAGATCAATGGGTACTGGAAGAAATCAAGATGCATTTCTAACTTGCACAAAAATCAGCACAGTTTTAGATATTACGAATCAAATCAAAAGAatagtgaaaatgggatggagtgcatttggaaatcTAGTAATTtgcctgaaaagaaaagtatctgatcagtgcatactaccagtgctcacttatgacCGTGAAACCTGGttacttaatgcaaaaatgatacagaaactgcagacgacgcaaagaagcatggaaagaagcttgaattaaaaaagagaaaaagagttaaaatattaaaatggcaatgggccacactgcactgcatggacacattgcaagaagaacagatcaaagatggacaaaggtaGCTATCAAAtcccaagagataaaaaaaatagctaGAAGATGggacaattaaataataaactttgcaggcatgacgtGGAAGCTATAGATTGACACAAGTAGAAACATCTTAGGGAGGCCTACATCCAGCTGTGGATCGATTATAGGATGATGATGAGATGTatacttttcttttacatttttcattttcaatttataCCAGGTTTTGTGTTCCTTAAAAATTGGTGTATAAGCATAGAAatgttatataattgtattacccCTAAACTACCACATGGTGGAACTGTATTCCTAATGTAACAATGTTTGGGCCCTCAGTCCTCAGTCATGAGAATttgcatgctttttgtttttattgtgaagcaGTTGTGAACTGCCAAAAGCGAGGATATACATAGGGTGCTTATAGTGATAC
>TU86735
CGTGGAATCCGTGCGACGGCGGAGCTCGTGTTTCTGGCATGtgctttttgtaaatatatttagaatataaacATTACAATGTCCGTGTTTCACGACGAAGTAGAGATAGAAGATTTTGAATATGACGAAGAAACGGAGACTTACTATTTTCCCTGTCCGTGTGGGGATAAATTTGCTATAACTAAAGAAGACCTAGAAAATGGGGAGGAAGTAGCCACCTGCCCAAGCTGTTCATTGATAGTCAAAGTAATTTATGATAAGGAGGAATTCATGTCTGGGGAAATCGTAGAAGCTCCTGCAACAAACAAAGTGGAGCTCGTGAAGAGCTCGTGAAGAGCTGATGGCGTACAGCGAACCGTCACTGACGAAATACTTACACTCCCGGAGGCAATCCTCTCCGATTGCTTTGGATCAGCAGGGGACAGATGCTACATCTCTGTAGACCTGATCTCACAGACTGTAAAGCAGGAACATTAAATATCCTTGGCTTGATGGACAGAAGATGTATAAATCATCAGAACTGCTATCCCAGACACTATAGAGGACAATACATGCCAATCAATTGGAGAAACAATTGAGTGTTGCTTTAAGCTTTTTTTACCATAATTTATTTAACGagtaaagcaattaaaatatgcaaaacttacttgttttgtttatgattgCATGGGAAAATCATCTGCAGTACTTCTTTGCAAGTATTTTCTTGcattaacaattttttttacaattgtgAGCAAAACATTCTGTTCCAAGTGTGTCAGTAGTTCTTCACATTATAGGgagattaaatataaatattgaagcTAAAAGGAAATTGTAATTAAACCTGCTTTGGAATGGCATGACTGGCATTACTGTAACTTGGTTCAACTatctcattttaattaacttaagcCAGTTTGCTAAGTTAATGGAAACTAGTCACGAATAGAAGTAATTTGTTTACTGTGAATAATCTCAGAATTAGAGGGGCCCAGCACACTCTGTGCTCTCTGAACTGACCACGGCAGTCAAGTTGcagatgacaagaaaaaaacatattggcCCATGGCTGGTTTAGCTACCATGCTTGCAAAAGAGTATGTGTAGGAAACTACTCTCCGAATCTCTCTCAACTTACTATTTCCCGATGAGTTCGTCATCTTAACAAAAAACACccgaagacctgcagcttcaaattcaagaactctcgAATGAAAGCAAGATAACTGGACTGAAAATGACCTTGGATAAAatcaaagtcatgtttaacagctttgttaaatcttaAGAAAGTTGAGGTAGATCAATGGGTACTGGAAGAAATCAAGATGCATTTCTAACTTGCACAAAAATCAGCACAGTTTTAGATATTACGAATCAAATCAAAAGAatagtgaaaatgggatggagtgcatttggaaatcTAGTAATTtgcctgaaaagaaaagtatctgatcagtgcatactaccagtgctcacttatgacCGTGAAACCTGGttacttaatgcaaaaatgatacagaaactgcagacgacgcaaagaagcatggaaagaagcttgaattaaaaaagagaaaaagagttaaaatattaaaatggcaatgggccacactgcactgcatggacacattgcaagaagaacagatcaaagatggacaaaggtaGCTATCAAAtcccaagagataaaaaaaatagctaGAAGATGggacaattaaataataaactttgcaggcatgacgtGGAAGCTATAGATTGACACAAGTAGAAACATCTTAGGGAGGCCTACATCCAGCTGTGGATCGATTATAGGATGATGATGAGATGTatacttttcttttacatttttcattttcaatttataCCAGGTTTTGTGTTCCTTAAAAATTGGTGTATAAGCATAGAAatgttatataattgtattacccCTAAACTACCACATGGTGGAACTGTATTCCTAATGTAACAATGTTTGGGCCCTCAGTCCTCAGTCATGAGAATttgcatgctttttgtttttattgtgaagcaGTTGTGAACTGCCAAAAGCGAGGATATACATAGGGTGCTTATAGTGATACTCATATAGGAAGGACAGAAGTTTTACACTACAAATAAGAATCTTGGTAGTTTGGTACTCTACATTTCTGAATAGATGTACCTATCCTCTTTGACAGTATGCTGATATGCAGTACATATATAACGTTGCGTCCGTGACACAATAGTGATTCAAAGAGATGCACTAAACCTGA
>TU86736
CGTGGAATCCGTGCGACGGCGGAGCTCGTGTTTCTGGCATGtgctttttgtaaatatatttagaatataaacATTACAATGTCCGTGTTTCACGACGAAGTAGAGATAGAAGATTTTGAATATGACGAAGAAACGGAGACTTACTATTTTCCCTGTCCGTGTGGGGATAAATTTGCTATAACTAAAATCAGCTTGCCTATGGACGGGTGTGGGTGTGGAGGGGCTGTCATACATGATTTCAGGAAGACCTAGAAAATGGGGAGGAAGTAGCCACCTGCCCAAGCTGTTCATTGATAGTCAAAGTAATTTATGATAAGGAGGAATTCATGTCTGGGGAAATCGTAGAAGCTCCTGCAACAAACAAAGTGGAGCTCGTGAAGAGCTCGTGAAGAGCTGATGGCGTACAGCGAACCGTCACTGACGAAATACTTACACTCCCGGAGGCAATCCTCTCCGATTGCTTTGGATCAGCAGGGGACAGATGCTACATCTCTGTAGACCTGATCTCACAGACTGTAAAGCAGGAACATTAAATATCCTTGGCTTGATGGACAGAAGATGTATAAATCATCAGAACTGCTATCCCAGACACTATAGAGGACAATACATGCCAATCAATTGGAGAAACAATTGAGTGTTGCTTTAAGCTTTTTTTACCATAATTTATTTAACGagtaaagcaattaaaatatgcaaaacttacttgttttgtttatgattgCATGGGAAAATCATCTGCAGTACTTCTTTGCAAGTATTTTCTTGcattaacaattttttttacaattgtgAGCAAAACATTCTGTTCCAAGTGTGTCAGTAGTTCTTCACATTATAGGgagattaaatataaatattgaagcTAAAAGGAAATTGTAATTAAACCTGCTTTGGAATGGCATGACTGGCATTACTGTAACTTGGTTCAACTatctcattttaattaacttaagcCAGTTTGCTAAGTTAATGGAAACTAGTCACGAATAGAAGTAATTTGTTTACTGTGAATAATCTCAGAATTAGAGGGGCCCAGCACACTCTGTGCTCTCTGAACTGACCACGGCAGTCAAGTTGcagatgacaagaaaaaaacatattggcCCATGGCTGGTTTAGCTACCATGCTTGCAAAAGAGTATGTGTAGGAAACTACTCTCCGAATCTCTCTCAACTTACTATTTCCCGATGAGTTCGTCATCTTAACAAAAAACACccgaagacctgcagcttcaaattcaagaactctcgAATGAAAGCAAGATAACTGGACTGAAAATGACCTTGGATAAAatcaaagtcatgtttaacagctttgttaaatcttaAGAAAGTTGAGGTAGATCAATGGGTACTGGAAGAAATCAAGATGCATTTCTAACTTGCACAAAAATCAGCACAGTTTTAGATATTACGAATCAAATCAAAAGAatagtgaaaatgggatggagtgcatttggaaatcTAGTAATTtgcctgaaaagaaaagtatctgatcagtgcatactaccagtgctcacttatgacCGTGAAACCTGGttacttaatgcaaaaatgatacagaaactgcagacgacgcaaagaagcatggaaagaagcttgaattaaaaaagagaaaaagagttaaaatattaaaatggcaatgggccacactgcactgcatggacacattgcaagaagaacagatcaaagatggacaaaggtaGCTATCAAAtcccaagagataaaaaaaatagctaGAAGATGggacaattaaataataaactttgcaggcatgacgtGGAAGCTATAGATTGACACAAGTAGAAACATCTTAGGGAGGCCTACATCCAGCTGTGGATCGATTATAGGATGATGATGAGATGTatacttttcttttacatttttcattttcaatttataCCAGGTTTTGTGTTCCTTAAAAATTGGTGTATAAGCATAGAAatgttatataattgtattacccCTAAACTACCACATGGTGGAACTGTATTCCTAATGTAACAATGTTTGGGCCCTCAGTCCTCAGTCATGAGAATttgcatgctttttgtttttattgtgaagcaGTTGTGAACTGCCAAAAGCGAGGATATACATAGGGTGCTTATAGTGATACTCATATAGGAAGGACAGAAGTTTTACACTACAAATAAGAATCTTGGTAGTTTGGTACTCTACATTTCTGAATAGATGTACCTATCCTCTTTGACAGTATGCTGATATGCAGTACATATATAACGTTGCGTCCGTGACACAATAGTGATTCAAAGAGATGCACTAAACCTGA

Function

symbol description
dph3 Predicted to enable metal ion binding activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine and tRNA wobble uridine modification. Predicted to be active in cytosol and nucleus. Orthologous to several human genes including DPH3 (diphthamide biosynthesis 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014339 False 2201 mRNA 0.38 3 10058268 10061230
TU86735 False 2234 lncRNA 0.37 3 10058097 10061092
TU86736 True 2290 lncRNA 0.38 4 10058097 10061092

Neighbor

gene id symbol gene type direction distance location
AMCG00014341 fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730 coding downstream 14531 10027652 ~ 10043566 (-)
AMCG00014332 NA coding downstream 585838 9467324 ~ 9472259 (-)
AMCG00014333 inpp4a coding downstream 639861 9373456 ~ 9418236 (-)
AMCG00014331 NA coding downstream 691061 9358847 ~ 9367036 (-)
AMCG00014325 NA coding downstream 829470 9216869 ~ 9228627 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding upstream 131399 10192629 ~ 10197751 (-)
AMCG00014348 NA coding upstream 179776 10241006 ~ 10256375 (-)
AMCG00014349 NA coding upstream 238773 10300003 ~ 10301361 (-)
AMCG00014347 NA coding upstream 257014 10318244 ~ 10328231 (-)
AMCG00014354 NA coding upstream 464383 10525613 ~ 10526969 (-)
G69427 NA non-coding downstream 3822 10053737 ~ 10054275 (-)
G69396 NA non-coding downstream 122699 9935175 ~ 9935398 (-)
G69394 NA non-coding downstream 140762 9916845 ~ 9917335 (-)
G69391 NA non-coding downstream 146076 9901357 ~ 9912021 (-)
G69382 NA non-coding downstream 162517 9894726 ~ 9895580 (-)
G69483 NA non-coding upstream 276657 10337887 ~ 10340946 (-)
G69495 NA non-coding upstream 358950 10420180 ~ 10479009 (-)
G69523 NA non-coding upstream 619840 10681070 ~ 10681292 (-)
G69528 NA non-coding upstream 678186 10739416 ~ 10739930 (-)
G69530 NA non-coding upstream 705370 10766600 ~ 10768258 (-)
AMCG00014340 NA other downstream 40346 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 740930 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 1673873 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 1899507 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 1918971 8134903 ~ 8139126 (-)
G69537 NA other upstream 735486 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 1063799 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 1598781 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 3026378 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 6660843 16722073 ~ 16737877 (-)

Expression


Co-expression Network