AMCG00014340


Basic Information

Item Value
gene id AMCG00014340
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10001134 ~ 10017751 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014340
GTCGACAGCACTCCTGTTGGAGCCATCTGAAGAGGAATTGGTCGATGAGCCCGACAGTCTGCGAATGGTGTTGGTAAGGTTCCCCGACGGAGGTGGCTTCAAGCGGTCCACCGATGACTGTGTCAACATGAGCGTGAAAGCCTTTGAACTCCTTCCCGCAGTAGAGCGGGAGCTCCTGATGGGAGACAAACCGCGGATCAACATCGAGTGTATCGAATGCTGCGGCAAAAACATCTACATTGGGACCAATGACTGCTTCATCCACCATTTTCTGCTTGAAGAGCAGTGTACAGCAAAAGGGAAGCTGACCTTTTCAGCCCAAAAGCAGTTGCACAAATACCTAGGTCTCAAAAAGCCTGTAAACGAGTTGAAGGCCGCCTCTGCCCTGAACCGCCTAATCGTGCTCTGTGACAACACTATCATGGTTGTGAACATGCTGAACTTGGAGCCCATTCCGTCTGGGGCCAAAATCAAAGGTGTGGTCACTTTCACTATGAATGAGAACCCTGTCAATGGTGACCCCTTCTGTGTGGAAATTGGGATAATCTCTGTGAAGAAAAGGACCATACAGATCTACATGGTTTTTGAGGATCGAGTGCAGATTGTCAAGGAGTTGTCCACCCCTGAGCAGCCCTCAGCTATCAGTCTGGATGGCTATTTCCTCTGCTTGGCACTAACAACACAGTACATTATCCTGAATTATAACACTGGAGCCTCCCAGGACTTATTTCCCTATGACAGTGAAGAGAAGAAACCAATAGTAAAGAGAATAGGCAGAGAGGAGTTTCTCTTAGCTGCTCCTGGTGGTTTAGGGATGTTTGCTACCGCAGCAGGAATTTCTCAGCGGGCCCCGGTGCGCTGGTCAGAGAATGTGATCGGAGCCGCTGTGTGCTTTCCCTATGTCGTGGCTCTGGATGAGGGCTTTGTTACTGTGCATAGCATGCTGGACCAGCAACTCAAGCAGACTCTTGCTTTCCGGGATGGCCACATACTGCAGGATTTTGAAGGGAAAATGGTTTTAGCCACTACAAAAGCTGTATATATGCTAGTGCCCTTACCTCTGGAAAGACAAATCCAGGATCTTCTTGCCAGTCACCGAGTGGAAGAAGCCCTTGTCCTGGCGGAGGGAGCCAGGAGAAACATTCCTAAAGACAAATTCCAGATAATGTACAGAAGAATTCTTCAGCAAGCAGGATTCATACAGTTTGGACAGCTTCAGTTTTTAGAAGCTAAAGAACACTTCAGGAAAGGCCATTTGGATGTGCGAGAACTTATTTCCCTGTGTCCTCTGCTCCTGCCGGCGACGTCCACCTTCACACGCTGCCACCCTCCACTCCATGAGTTCGCCGATCTCAACCATCTGACGCAGGGAGACCAGGAGAAGATCCTCAAGTGCAAGAGGTTTCTCATCAGTTACTTGAATGAGATCCGCAGCACCGAAGTGGCCAACGGCTACAGGGATGATGTCGACACGGCCCTGCTGAAGCTGTATGCGGAAGCCAACCATGAAAGCCTGCTGGACTTGTTGGTTTCTGAGAATTCGTGTCTCCTTCTGGATAGTGCTCCATGGctagagaaacacaaaaagtatCTGTGGGTACGAATAGTAAACGGTGAGCTTCAGGATGGTACCCGGACTGATCTGTATGATTATGTCGTGGATTTCCTCAGTTTCTGCTCCAACCAAGACCTGATCTGGAAATATGCAGATTGGGCTCTCAAGAAAAATGAGAAGGTGGCAGTTCAGATTTTTACAAGGAGGCCAGTAGATGAAGAGAAAGCGGGCAAGCTGAACCCAGACGATGTCATCAAGTACCTACACAAATACTCCCAAGCCATCATACTGTATCTCGAACACCTAGTTTTGGAAAGAAATATTCAGaAAGAAAAGTTCCACACTCACCTGGCAGTGCTCTACCTCGATAGCGTACTGCAGCTACAGTCTCAGAGCGCCACGCCTGCAGAGGATTTAACCTGTGCCAGGGCCAAGCTGCAAAACCTGCTGCGGCAGTCCAGTATCTGTAGAGTGCAGCTGCTGCTAGGTAAGATCAAAGACACGGGTCTTCACTTGGAGTGTGCGACGCTGTACGGAAAGCTGGAGGAGCACGACAAGGCCCTGCACATCCTGGTCCACCAGCTCAAAGACTTCCAGGCCGCAGAAAGGTATTGCCTGTGGACGTCTGAGGACAGGGACTCGTCTTACAGGCAGCGGCTCTTCCACATGCTGCTGGCTGTGTACATGGACCCCGCCATCTCCAGCGATGCCTTAGTCATGGCTGCCGTGGACCTGCTGAACCGGCACGCCGAGGTCTTCGACGCAGTCCGTGTTTTAAGACTCGTCCCGGAGAGCTGGTCGATACAGCTGCTCGGGCCCTTCCTGAGCGGAGCCATGAGGGAGAGCATGCACTCCAAGCGCATGACTCAGATCGCACTGGGCTTGGCCAGATCGGAGAACCTCATCCATAAATACGAGAAGTTGAAGTGCAAAGGAGGGCCAGTCCTCTTGTCGGAGAAGAAGGGATGCCAGCTGTGCCACAACACCTTTAGCGAGCCTGAGTTTGTATGTTACCCCAATGGCATTCCAGTCCACACTCACTGTGCAGCCAAGAGGAACAGAGAATCTCCCAGCAAGAGGCACTTTACAAACGCCAGCAACCACACCTGAAACCGCCATTGCTCTCAAAACTGGTAATCCCTCCTGAAAATCTTCTGGAAGTGCAGAAATGGTGCTTGATTTGCATTTGTTAAACGCATGGAGAAGCACACACCCGCTGGGGTCCAGCAGAACTGCTGTCAGGATGTGAAATGTGAGCATTCACCCTTTCTACATGAACAAGTCTTTTGTGTAAAACTTGAAGCTATTTATTCTGTGTTCCTGTCCATTTAAACCGTAATAACCGTGAACACTGCTCTTTCTCCCAACAGTTCCATCCAAATGCAActgcaaaataaacttttatgaTAAAAGATGTAACATAAAGGGCTGTACCAATTCTGTACTGAATTCTTCCCTTCAGATACCAGATACCACGTCTTCATGAGGTTTGTGATAGGAGTGTCTTTCTCTGCCATTTCTCTTTCTGGACAGCCCAGACACAGGTCCTGTCAGAGCTCCAGTTGGGAGATGATTGTGAAGTATTGGTATAAAACATTACTTAATTGAGCTTCCAGTTACTGTGTGGCTGCTGTAGTGATAATCTTCCTTGTGTGCCATCACGGTCAGAGATTTGTCAT
>TU86723
CACACATTTTCACCATTTTCATTAAGTTTGCAGGCATTTGTGTGAAAATAGTAATTTCCCAGCTTTCCCAAGATTCATGTGAACCTGGTTACTACCTCAGAACTAAAAAATTGCATATCGAGAATGTGGGGATATTAACTTCACTTACTGCGTCTTCAGACTCTCCCTCTTTGGGCGCTTGTCGTTTTAATTTGACCACCGCTGTGCCTCCTGGGGGAGATGTGGGTGGGGGCGACATTCCGTTTCCCGAGGGACTCCTGTGAATGGGTGCTTCACTGCATTGCTTTTCTGTTGCCCCACTCACAAGGTCGACAGCACTCCTGTTGGAGCCATCTGAAGAGGAATTGGTCGATGAGCCCGACAGTCTGCGAATGGTGTTGGTAAGGTTCCCCGACGGAGGTGGCTTCAAGCGGTCCACCGGTCCAGAGCCATCGTCTGCCTTCTTTAGTTTTATGCTAGTGCTTGTGGAGCTGCCATCAAACACAATCAGGGGTCTTTTTCTAGAGCTTTCACTCCAAGAACTAAAACAAAGACCCAAAAGACAGACCAATTCAATTCAGGCAAAACAGTAAACACTTTTCATACCGTAAAAATCTTACATTCGcactttaaaacaattgtattaatgcatataaaatatgaatgctttCTTCACCTAGAATTAGTTTACTATGATTAATCATAAATTCAAACATTTCCCACACAATGAATAGCAAATGTGTCATAATGTATTCTATGCTACTgagaaataaactgaacaaataaGGGAGAGTGCTACTGCAATGAATCAGTCATGTAATGTTTGTTCTAAAGCACACTGTGAGTTTAAAGAAGATGGAcgaattacaaaaaatatatacatctgaTTTATGCAGACATTAAACAGGCATAAGCAGTACTGCACCAGCGTTTCTGTGAATTTGTTGCAGACTGGCACGCTCTGCTCTTCTGCATCCTTCTCCCCCAGCGGCTGTTGGGCAGGGCCCTTTGAGGCAGAGGAATGACATGCTGAAGGTACAGCTCTGTGAGGCAGTCTCTGTTGGCAGCCTTCTCATTTTCAACAGggatttttCTCTTGTAGTGTAAGAAGTAAAAAATCCCGAGAGAGCAATTCGGGGTGCAACAGGAGATCTAGATTAGCCCCGCTTTTGCCGATATGTGCACCTTTCCCTCCACTCAAATTGCAACCATCCGCCATTTTCATCTTCGGT

Function

GO: NA

KEGG:

id description
K20177 VPS3, TGFBRAP1; vacuolar protein sorting-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014340 True 3234 mRNA 0.49 11 10001134 10017444
TU86723 False 1211 lncRNA 0.44 2 10015490 10017751

Neighbor

gene id symbol gene type direction distance location
AMCG00014332 NA coding downstream 528875 9467324 ~ 9472259 (-)
AMCG00014333 inpp4a coding downstream 582898 9373456 ~ 9418236 (-)
AMCG00014331 NA coding downstream 634098 9358847 ~ 9367036 (-)
AMCG00014325 NA coding downstream 772507 9216869 ~ 9228627 (-)
AMCG00014326 NA coding downstream 853797 9144538 ~ 9147337 (-)
AMCG00014341 fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730 coding upstream 9901 10027652 ~ 10043566 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding upstream 174878 10192629 ~ 10197751 (-)
AMCG00014348 NA coding upstream 223255 10241006 ~ 10256375 (-)
AMCG00014349 NA coding upstream 282252 10300003 ~ 10301361 (-)
AMCG00014347 NA coding upstream 300493 10318244 ~ 10328231 (-)
G69396 NA non-coding downstream 65736 9935175 ~ 9935398 (-)
G69394 NA non-coding downstream 83799 9916845 ~ 9917335 (-)
G69391 NA non-coding downstream 89113 9901357 ~ 9912021 (-)
G69382 NA non-coding downstream 105554 9894726 ~ 9895580 (-)
G69373 NA non-coding downstream 409753 9591176 ~ 9591381 (-)
G69427 NA non-coding upstream 35986 10053737 ~ 10054275 (-)
G69483 NA non-coding upstream 320136 10337887 ~ 10340946 (-)
G69495 NA non-coding upstream 402429 10420180 ~ 10479009 (-)
G69523 NA non-coding upstream 663319 10681070 ~ 10681292 (-)
G69528 NA non-coding upstream 721665 10739416 ~ 10739930 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 683967 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 1616910 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 1842544 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 1862008 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 2577843 7413729 ~ 7423291 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 40346 10058097 ~ 10061230 (-)
G69537 NA other upstream 778965 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 1107278 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 1642260 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 3069857 13087608 ~ 13133751 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location