AMCG00014341 (fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730)


Basic Information

Item Value
gene id AMCG00014341
gene name fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10027652 ~ 10043566 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014341
CCATATTTTAAGTAATCCAATAGAGAACTTCAGAGGCACTCTCTCAACCAGTTCATTCTCTCGACGGGGCTCAGGAAGGCAGCACATCGTTACTGGAAGGAGAGAGCCGACTCCCTGGAGTCAAGATGACTGAGCGGTTCGACTGCCACTACTGTAAAGAGTCCCTGTTTGGGAAGAAGTACATCCTTCGAGAGGAGAATCCGTACTGTGTCAAGTGCTATGAGAGCCTCTACTCCAATGCCTGCGAGGAATGCAAAAAACCCATCGGCTGCAACTGCAAAGATCTCTCATACAAGGATCGTCACTGGCATGAAGAATGCTTCCATTGCTTCCAGTGCAAGCGCTCCCTGGTGGACAAGCCCTTCTCCACCAAGGATGAGCAGCTCCTGTGCACCGAGTGCTACTCCAATGAGTATTCATCCAAGTGCTACGAGTGCAAGAAGACCATCATGCCTGGCACCCGTAAGATGGAGCACAAAGGCAATAGCTGGCATGAGACCTGCTTCACCTGCCACCGCTGCCAGCAGCCCATAGGAACCAAGAGCTTCATTCCTAAGGAGACCCACAATTATTGCGTGCCATGTTACGAGAAGCAGTTTGCCATGCAATGTGTGCAGTGCAAAAAGCCCATCACGACTGGCGGAGTGACTTACCGTGAGCAGCCCTGGCACAAGGACTGCTTTCTGTGCACTGGATGCAAGAAGCAGCTGTCTGGACAACGCTTCACGTCTCGGGATGATTTTGCATACTGCCTGAACTGCTTCTGTAATCTGTATGCCAAAAAGTGTGCTGGATGCACAAACCCAATCAGCGGACTTGGAGGGAGCAAATACATCTCCTTTGAGGAACGCCAGTGGCACAACGATTGCTTCAACTGCAAAAAGTGTTCCGTCTCCCTGGTCGGCCGAGGATTCCTGACCGAGAGAGACGACATCTTGTGCCCTGAATGTGGCAAAGACATGTGAAGAGAATTTGATCTGGAAAGATGTCTAATCAGATGCATACTGATTATAAAGAAGTACTACCAGTATTAATACTTCTACTAACAACCTTACTATttgaattcatattaaaaaaataactaacatGGAGCTCTAGTGGCCTGATAGATGCTTTACAAAGAGCGTTTGCATGCACTGACATGAGATTTccttttgaatgcatttgaagTGTAAGCATgattattaaatgtaacaaaatatagaaaacaaacatcatttaaaaacatataagtTATTACTCCCAGTGCCAAATGAAGGCAAATcatgattatgaacattttGTACACCTAAAAGTGGAAAAGGTATTCCAGTTCAAAATTTGATATACTATGAATACCTTTTACAGAGTTTTATATAAAGTGAACCAACACTTAAAACGACTAATGATAAGACACAAGAGTGAGATGTTATGGGATCTAGTGTGCATGTACACATGACCAATCGATTCCAGTATTGCTTTTATCTTTCTTGTCTTGTATGTTCAGACACAATTacaggaaatattttaaaatgtc

Function

symbol description
fhl2a Predicted to enable transcription coregulator activity. Predicted to be active in Z disc and nucleus. Is expressed in cardiovascular system; pigment cell; and retina. Orthologous to human FHL2 (four and a half LIM domains 2).
fhl2 Enables identical protein binding activity. Involved in several processes, including negative regulation of apoptotic process; negative regulation of calcineurin-NFAT signaling cascade; and negative regulation of transcription by RNA polymerase II. Located in focal adhesion.

NR:

description
PREDICTED: four and a half LIM domains protein 2 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14380 FHL2; four and a half LIM domains protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014341 True 1516 mRNA 0.44 6 10027652 10043566

Neighbor

gene id symbol gene type direction distance location
AMCG00014332 NA coding downstream 555393 9467324 ~ 9472259 (-)
AMCG00014333 inpp4a coding downstream 609416 9373456 ~ 9418236 (-)
AMCG00014331 NA coding downstream 660616 9358847 ~ 9367036 (-)
AMCG00014325 NA coding downstream 799025 9216869 ~ 9228627 (-)
AMCG00014326 NA coding downstream 880315 9144538 ~ 9147337 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding upstream 149063 10192629 ~ 10197751 (-)
AMCG00014348 NA coding upstream 197440 10241006 ~ 10256375 (-)
AMCG00014349 NA coding upstream 256437 10300003 ~ 10301361 (-)
AMCG00014347 NA coding upstream 274678 10318244 ~ 10328231 (-)
AMCG00014354 NA coding upstream 482047 10525613 ~ 10526969 (-)
G69396 NA non-coding downstream 92254 9935175 ~ 9935398 (-)
G69394 NA non-coding downstream 110317 9916845 ~ 9917335 (-)
G69391 NA non-coding downstream 115631 9901357 ~ 9912021 (-)
G69382 NA non-coding downstream 132072 9894726 ~ 9895580 (-)
G69373 NA non-coding downstream 436271 9591176 ~ 9591381 (-)
G69427 NA non-coding upstream 10171 10053737 ~ 10054275 (-)
G69483 NA non-coding upstream 294321 10337887 ~ 10340946 (-)
G69495 NA non-coding upstream 376614 10420180 ~ 10479009 (-)
G69523 NA non-coding upstream 637504 10681070 ~ 10681292 (-)
G69528 NA non-coding upstream 695850 10739416 ~ 10739930 (-)
AMCG00014340 NA other downstream 9901 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 710485 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 1643428 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 1869062 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 1888526 8134903 ~ 8139126 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 14531 10058097 ~ 10061230 (-)
G69537 NA other upstream 753150 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 1081463 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 1616445 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 3044042 13087608 ~ 13133751 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_02293318_02298524 FHL2, FHL2A, FHL2B coding CI01000037 null 2292918 ~ 2298612 (-)