AMCG00014344


Basic Information

Item Value
gene id AMCG00014344
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10156465 ~ 10162165 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014344
ACAGAAAACTCATAAAGGTTTCCTGTATATTACTTTGCCTAGGCAGACTGGCTCAGGATTCAGACAACCTGCCTGTTCGACTCTCGCTGACCTACTTTCACGAACAGAGCTGTGGCTTCACAGAGGGAGAGTTTAATCCTGCAGAGATcaacactgctttttttttttttttggtcacttACAGGGGACACAGGAAAACTTTCACTTTAAGGCACGCAGAGGGGCCCACACTGAAAGACGATGGCTTTCAAAAATCTCCATCTGCAGCTATGACCAAAGCCGAGCGACGAGCCCCTGCCATATCACCGTCCGAGGCGAAAACATTTCTGACGTCTCTAAAACGACACAAAAGAAACCTGTGGGACCGCAGCCGTCcagatgtccagcagtggctTCAGCAGTTCATGTACATGGGCTTTGATGAAACTAGATTTGAAGCTGATCTGACCTACTGGATGGATCGATCAAGGCAAAATGACTACTATGGGCATCAACACCATTATGACGAGAATGCGCCCATTGGCCCTCGTGACCCGGGTTCCTTCAGGCACGGAGCCAACGTCAACTACGATGACTATTAAACAGCCTCTCGTTCTCAAATACCAGATCTGTACTCAGAAGTCTGTGACTGAAAGTGCAACACCGCATGAGCAAGCACAAaattgccatttttgttttctaatattctTTGATTAGAGCATTCCACAGTAATTTTGTCCCTGAATGAAAGTATTAGGAATGCATCTCATAGTTACTTCTGTCTGTGAACTCTATTATAGAATGTGTGTATAGCACTGTATGTCTAACAATATCCTGCTTGTTGTGTATAACCTTGAATTTGCTATGAATAaaattgattttcaa

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0007417 central nervous system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014344 True 864 mRNA 0.44 4 10156465 10162165

Neighbor

gene id symbol gene type direction distance location
AMCG00014342 nck2b coding upstream 10763 10125154 ~ 10145702 (+)
AMCG00014343 NA coding upstream 84864 10015503 ~ 10071601 (+)
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding upstream 161794 9993673 ~ 9994671 (+)
AMCG00014335 NA coding upstream 174872 9959233 ~ 9981593 (+)
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding upstream 239676 9914125 ~ 9916789 (+)
AMCG00014352 NA coding downstream 66835 10229000 ~ 10242261 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding downstream 146257 10308422 ~ 10318002 (+)
AMCG00014350 NA coding downstream 190680 10352845 ~ 10380421 (+)
AMCG00014357 NA coding downstream 503228 10665393 ~ 10671738 (+)
AMCG00014356 NA coding downstream 558919 10721084 ~ 10754147 (+)
G69431 NA non-coding upstream 100732 10055377 ~ 10055733 (+)
G69428 NA non-coding upstream 101754 10054491 ~ 10054711 (+)
G69400 NA non-coding upstream 128114 9974424 ~ 10028351 (+)
G69384 NA non-coding upstream 246417 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 780115 9366537 ~ 9376350 (+)
G69457 NA non-coding downstream 61506 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 330982 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 675039 10837204 ~ 10838230 (+)
G69556 NA non-coding downstream 797161 10959326 ~ 10961929 (+)
G69610 NA non-coding downstream 1058905 11221070 ~ 11221274 (+)
AMCG00014345 NA other upstream 4552 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 147817 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 2673905 7464503 ~ 7482560 (+)
G68848 NA other upstream 2739871 7413640 ~ 7416594 (+)
G68830 NA other upstream 2806998 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 3084144 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3493073 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4027399 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 4140282 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 5059749 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037611 ecrg4a coding NC_007120.7 CM002893.2 6371919 ~ 6380653 (-)