AMCG00014345


Basic Information

Item Value
gene id AMCG00014345
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10147979 ~ 10151913 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014345
ATGAGTCGCCTGCGTGTCTTCCTGCTGGTCTGCACTGTCCTCCTCGGCCTCTTATCTCTAATAGAAGCAGAAGCAAAGACAGAAGACAAAGAAGCCCGGGAAAAGCGCAGCATGCCAAACTGGGGTTACAGTGCCTCTGATTTCTTTGGCTGGGTGGAGAACCTGCGTGCCCATGGCGGCTATGAGAGGATTGATGAGCTCGCCAGAACCTTCTGGGCTCATTTCCCCTCAGCCTCCAGGCTAGGCTATGACACCCCTGAACCTGAGGAGTGA
>TU86745
GGAGGCTCATATTATTCAAGGTTTAACTCCCAGTGATCCTCTACAGCTAAATCCTAAAGTGAGTTTAGCTGAAATGATGAAAATAGCCATTTGTTACATTGCCTTTGCCTTTGATTCTGttttttgaatatttgttttgcccACTCCGGTGCTAGAACTCAAGATGCGCTAGGAAAAGGGGCAGCAAATTATTACATATGGAGTAAGCCTGAGAAAAGTAAATAGATATGATACTGCTGTTAGCTTCTCACTGGAGGGATTAGAGTTTCCAACCTCTTGGACGAAGAAGGAGCCTCCAACAGATCCTTTGAGGAAAccaaattaatttcagttagGATTGTTACTTCGGCACAAGCCTTTGGGAAATCATGAGTCGCCTGCGTGTCTTCCTGCTGGTCTGCACTGTCCTCCTCGGCCTCTTATCTCTAATAGAAGCAGAAGCAAAGACAGAAGACAAAGAAGCCCGGGAAAAGCGCAGCATGCCAAACTGGGGTTACAGTGCCTCTGATTTCTTTGGCTGGGTGGAGAACCTGCGTGCCCATGGCGGCTATGAGAGGATTGATGAGCTCGCCAGAACCTTCTGGGCTCATTTCCCCTCAGCCTCCAGGCTAGGCTATGACACCCCTGAACCTGAGGAGTGAATTAAGTGCAAAAACATCTGTGACCACGTGTGGAAAACAACTCGAAGATTTAACCCTGCACACCCCCAGTTCCCTTACAGGCTCTTCCTCAGATACCAAGGATTCTCAAACCGACGATTCTCGTGTACTGCGACTGATTTAGTAGAAAAGACTAAATACTCAATGTTTGTGAATTACATGCTAAAACAGTTTCCCACATTATTTGTCTTTGGGATATTCACAGCAGTTTTTGATGCtcaataaaatgtacttaatttggtgttttgtgcttttgaaGTCCTTTTGAAGTCCTTCAAGTATGAGGTATGAATGAACCATGTGCAATGGGTTTGTTAGTCTGAAGTCTGAGCTATTCAATCATAAAAATTGATGCACACAAAACCAGGAATTTCAATATGATCAAATAAATGTTCTATAAACATCATTTCAGAATCAATATCTGCATATAGATTTCCATTACTGTCAAGTGAACTTGGTCTATATAAGCAAGTGGGTAAATTATTAAGTTACTTCATAATTTATACATGGTATTTTGTTTATggtatatttatacattgctATTATGCCTATGAAAAGTGTCTcgtatacagtacagtacactgttAATTCCACTGCAACATGGTGTGCTAGTAGATCAGACTGTCATagcatgtttttcttaaatgtcaTTGCTGAAACTTTGGAATacttgaaatggaaaataatagtaagtcttcactgttttaattatgttctaAAATTGGCTTTATGGTTGGTTGTATTTAAAACTGGGATTTGTAATAGTATAAGGAAGGTAGGGATTACTGAATACACTAGACCCAGCATGCAAATGTCAGCCCACATTGATGTTGTTTAATCatgttaatcaattaaaaaagcaaag

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014345 False 273 mRNA 0.55 3 10148452 10151030
TU86745 True 1524 lncRNA 0.39 4 10147979 10151913

Neighbor

gene id symbol gene type direction distance location
AMCG00014342 nck2b coding upstream 2277 10125154 ~ 10145702 (+)
AMCG00014343 NA coding upstream 76378 10015503 ~ 10071601 (+)
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding upstream 153308 9993673 ~ 9994671 (+)
AMCG00014335 NA coding upstream 166386 9959233 ~ 9981593 (+)
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding upstream 231190 9914125 ~ 9916789 (+)
AMCG00014344 NA coding downstream 4552 10156465 ~ 10162165 (+)
AMCG00014352 NA coding downstream 77087 10229000 ~ 10242261 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding downstream 156509 10308422 ~ 10318002 (+)
AMCG00014350 NA coding downstream 200932 10352845 ~ 10380421 (+)
AMCG00014357 NA coding downstream 513480 10665393 ~ 10671738 (+)
G69431 NA non-coding upstream 92246 10055377 ~ 10055733 (+)
G69428 NA non-coding upstream 93268 10054491 ~ 10054711 (+)
G69400 NA non-coding upstream 119628 9974424 ~ 10028351 (+)
G69384 NA non-coding upstream 237931 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 771629 9366537 ~ 9376350 (+)
G69457 NA non-coding downstream 71758 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 341234 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 685291 10837204 ~ 10838230 (+)
G69556 NA non-coding downstream 807413 10959326 ~ 10961929 (+)
G69610 NA non-coding downstream 1069157 11221070 ~ 11221274 (+)
G69406 tgfbrap1,LOC102780916 other upstream 139331 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 2665419 7464503 ~ 7482560 (+)
G68848 NA other upstream 2731385 7413640 ~ 7416594 (+)
G68830 NA other upstream 2798512 7346195 ~ 7349467 (+)
G68475 NA other upstream 5496015 4649200 ~ 4651964 (+)
AMCG00014407 LOC107725344 other downstream 3094396 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3503325 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4037651 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 4150534 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 5070001 15221914 ~ 15242333 (+)

Expression


Co-expression Network