AMCG00014346 (uxs1,LOC107721615,LOC107551074,LOC107676432)


Basic Information

Item Value
gene id AMCG00014346
gene name uxs1,LOC107721615,LOC107551074,LOC107676432
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10192629 ~ 10197751 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014346
atgttcttcaatatgtttttcagtttcacacAGAAGTATCCTCCAGTAAAGTTCCTATCAGAAAAGGATCGCAAAAGGATTCTGATCACAGGAGGCGCTGGCTTTGTGGGGTCACATCTGACTGATAAATTAATGATGGCTGGCCATGAAGTGACAGTGGTAGACAATTTCTTCACAGGGAGGAAAAGGAACGTGGAACACTGGATCGGCCATGAGAACTTTGAGCTCATCAATCATGACGTAGTAGAACCCCTGTATATTGAAGTGGATCAGATATATCATCTGGCTTCTCCTGCATCTCCACCCAACTATATGTATAACCCAATAAAGACACTGAAGACCAACACCATTGGAACGTTAAACATGCTGGGTTTAGCTAAAAGGGTTGGAGCTCGTCTTCTACTGGCATCAACGTCCGAGGTCTATGGTGATCCAGAAGTGCATCCTCAGAGCGAGGATTACTGGGGCCACGTCAATCCCATTGGCCCTCGGGCTTGCTATGACGAGGGGAAACGCGTGGCAGAAACCATGTGCTATGCCTACATGAAACAGGTGGGAGCTTACGTTTCAAATGTTGATTga

Function

symbol description
uxs1 Predicted to enable NAD+ binding activity and UDP-glucuronate decarboxylase activity. Acts upstream of or within several processes, including cartilage development; extracellular matrix organization; and proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in several structures, including cartilage element; head; mesenchyme; perichondrium; and yolk syncytial layer. Orthologous to human UXS1 (UDP-glucuronate decarboxylase 1).

NR:

description
UDP-glucuronic acid decarboxylase

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0033320 UDP-D-xylose biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0048040 UDP-glucuronate decarboxylase activity molecular_function

KEGG:

id description
K08678 UXS1, uxs; UDP-glucuronate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014346 True 582 mRNA 0.46 5 10192629 10197751

Neighbor

gene id symbol gene type direction distance location
AMCG00014341 fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730 coding downstream 149063 10027652 ~ 10043566 (-)
AMCG00014332 NA coding downstream 720370 9467324 ~ 9472259 (-)
AMCG00014333 inpp4a coding downstream 774393 9373456 ~ 9418236 (-)
AMCG00014331 NA coding downstream 825593 9358847 ~ 9367036 (-)
AMCG00014325 NA coding downstream 964002 9216869 ~ 9228627 (-)
AMCG00014348 NA coding upstream 43255 10241006 ~ 10256375 (-)
AMCG00014349 NA coding upstream 102252 10300003 ~ 10301361 (-)
AMCG00014347 NA coding upstream 120493 10318244 ~ 10328231 (-)
AMCG00014354 NA coding upstream 327862 10525613 ~ 10526969 (-)
AMCG00014353 NA coding upstream 454528 10652279 ~ 10708018 (-)
G69427 NA non-coding downstream 138354 10053737 ~ 10054275 (-)
G69396 NA non-coding downstream 257231 9935175 ~ 9935398 (-)
G69394 NA non-coding downstream 275294 9916845 ~ 9917335 (-)
G69391 NA non-coding downstream 280608 9901357 ~ 9912021 (-)
G69382 NA non-coding downstream 297049 9894726 ~ 9895580 (-)
G69483 NA non-coding upstream 140136 10337887 ~ 10340946 (-)
G69495 NA non-coding upstream 222429 10420180 ~ 10479009 (-)
G69523 NA non-coding upstream 483319 10681070 ~ 10681292 (-)
G69528 NA non-coding upstream 541665 10739416 ~ 10739930 (-)
G69530 NA non-coding upstream 568849 10766600 ~ 10768258 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 131399 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 174878 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 875462 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 1808405 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 2034039 8155932 ~ 8158590 (-)
G69537 NA other upstream 598965 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 927278 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 1462260 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 2889857 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 6524322 16722073 ~ 16737877 (-)

Expression


Co-expression Network