AMCG00014347


Basic Information

Item Value
gene id AMCG00014347
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10318244 ~ 10328231 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014347
GGGGAATTGTATAAAGTATAAATCTGAGTGAAAATGCAGCACTTTTTAAAAGTCTAACAGAGAAACACTgatatttagttaatttataaacTATGACACTTCGTATATTATCTGCTAGTAACCTGCGCATCAAGGTTTTTAAGTGTTAACAAGCAAAGCCTAGGCCTGGCTATTGTTGAGTGCTTGATGAAAAATACCAAACCattagcagtgtttttttttttttttttctctcttcctttgtTAGATTCACTTCACAAAACAGAAGGCTCTGGTGAATGAAACTGCagatattaatacaaaatccaTATGTCATGGTAAAGCTGCAAGGTTCAGCAATCCACATAACATCTGAAGGAGGGCAGGTGAGCACTTTCTTTGGACTATACCTCCAGGGTGACGAGATGGCCTCTTTCCAGCCCACAGTCATCAAGCTGAGCAAGCAGGAGGGCCAGAGCTATGGCTTCTTCCTGCGTGTGGAGATGGGGACGGAAGGGCACCTCATCCGCTGCATCGAAAAAGGCGGATTGGCTGAGCTGGCAGGCCTGAAGGATGGTGACCGAGTCCTGAGAGTCAATGGGGTCTTTGTGGACGATCAGGAACACGCACGGGTGGTTCAGCTGGTTAAAGAGAGTGGACAATCAGTTACCTTTCACATGCTGGATGAGGCCACCtatgaaaaagcaaagaaaagtgGCATCAACCTGTCTGGAGTGGATGAGTCCAGGCCAGCCCAGCCGCCATTGATGAATGGGGTGGCAGGGTCAGCTCTGAAACCAAAACTGTGCTATCTGGTCAATGTGAAGGAGGGGTTTGGATTTTCACTTAAATCAACAAAAGGGTACCAAGGGATGTTCTTTACTGATGTGAAACCCTCTGGAGCTGCTGCAAAAGCTGGAGTTCGAAACAATGATCGGCTCATTGAGATTAATGGTGAAAATGTAGAGAAGTCCACTCATGATCAGATTGTAGCTAAGGTGAAGGCCTCTGGCAAGAGTGTCACTTTCCTAGTTGTGgatgaagaaacaaacacacatttcagaaacaaaaatctgaaactgGGGGCAAGCCTTGCCACTGTGAAGCATCTTCCACATAAACCACGCATTGCTGAGATGACCCGGGGACCAGAAGGATACGGTTATTACCTGAGGGCTGAGAAAAAACGACCAGGTCACTTTATTAAAGATATCGATGCAGGAAGCCAAGCAGAGAAAGCTGGTTTGAAGGACATGGACCGACTGGTGGCCGTGAATGGAGAGGCAGTAGATTCTCTTGTACATGATAAAGTTGTAGAGAAGATAAGAGAGTGTGGCAACAAGTGTACCCTGTTGATTGTGGACGAGGAAACGGACAACATTTATAGAATGGCAGGTGCTTCTCCTCTTCTATTCTGGGAGGAAATGAAGGATTGCTTCGATTCTGCACCCGAGAAAGTCCGCCCCACCCATCAACAGGAAGCCCAGCAGAGTTCAGCCGTTCCTGTCCAGCTTCCCTCACCAACACCTCCCCCTCCCAGCGAAGAGCAGAAAGACTACAAACCCAAACTCTGCAAGCTGAGGAAGACCACCGGGGGCTTTGGTTTCCACCTCaatgcaattcaaggcatacaGGGACAGTTTGTCAAGGagGTGTTGAAGGGAGGCCCGGCTGATGAAGCGGGCCTGAAGGACAACGATATCCTGATCGAGGTGAATGGGGTCAACATCGAAAACTGCAGCCACGATGATGTGGTGGGGATGATCAAGAGCAGCGGGAACAGCCTGGTGATGTTGGTGGTGGAGAAGGAGGCCTATGACTACTTCAAGGCCAAGCAGATTCCCATCACCACTCTCCTGTTAGGGATGTCTTTGAGGGAAGTGACCCCTACTCCCCCCAAGCCAGCTGAGCCCCAGAAGGAAGAGaaggaagaagaggagaaacaagaagaggaaaaagaggagaaacaagaggaggaagaagaggagaaagaaaaggaagaggaagaggaagaagacgAACCTGCACGACCAGCTACCCCCCCAGAGACCAGGGATAGAtcgGACTCATCCTCCTCATCCTCCACGGATGAGGATGAAAGGTTCTGAAGAGGAACACCTTCAAAACTATCTCAGATTAGTATGCCGACTTTGTCTTAATGTTAGCTGAAGTTTATCTGGTCTCTCTAAGCTGTGAACAAATCAAAGCAGAGACTTAAACAATTTCTTATATGGCTCAGTGCAGAGTTGtggaatatttaaattaacctttACACTTTGGTACACCTGTAAAAACACTGtggatgtatttttaaaaagccattgTGTGATAAgataatgcatatatacatatacactctgCTTCACAGTCCACTAAAGCACCTATTGCGTGTTTATGTATATGAGTACGTGTATATGTAAATACCCCAATTCAATCGCACTGTATGTACATTGCATTGTAAACTGCTTCACAGGATTAAGTATCTGgagtttctgtatttaaaccatAAACTTGTAATGCTTCATGACATTTCAAACTATCAGCTATAATGTCATGATCTTTACAAACCCTCTGTGGGCAGATTATCTATACCAGGACATGAGGCTGATTTTGTCATTTAGATTTTACCTTAACTTCAAGAGATGTTTAATTGCCtaaatagtattaaaataagCCAATTCAGAAATGGTGCAATTAAACCTCCATTTTGAATACTCCAGCTAGTCTGGACAAATTCTTGGCTTTCCAATGTTAACAAACTCTCTCCTATACAAGAATCACCTGCAGGTGTATCCAGTTGTATTCATGTTGAGTTGAGCTGCATTTACCATATTAAATGTTACTCtacaaacatttatattgttatgtaTTGACATCTTGTATTGacaaatacaaagcatattAGGGCCACGTagggagtgttttttttttcctctctcaaaAATGGGGTGCACAGGAGGAGGATATATTCTGAGATAAAAGTCCCTACATGGCCCTAATACACTTTGGTAGAAATTAACCTTTGTGATGTGCACAATAGCTTAGGTTATTCAGAATTCACATTTCAGCTGTATCAGTACATCTGCAACAGCAGGGGTCAAAGAGCAAAGTACTACATTCTCAGATAATGCATTCTCTGAATTGTTGCTGTagcatttattgtttaaattgctCAACAGCATATTGCAACAGCCAGTCAGTGTCAAGTCAGCTGCAATACATCCGCTCACAGAACAGATGGAGAAAAAAGTACAACCCTTATATCTGAGAAGGTCATATGTTTGTATTATAGCAAACctgctttaatatttttttgtaaattcttGAATGTGCTGGATTGGGCATTTTGTCTCTTCTGTACTGACAATTTACAAACGCATAACCCCCCCACCAATACATTGTCGTAGCCTTGTTATCCATTTACAGGATCATGGATAACACAGAAAAGGAAACCTAACTGCTTTTATATATGCGCATGCAGACTTGTAGTCAAGTCACGATGATCTGAGTCCTTGATTTGAGACTCAAGTCTAaagttgaatttaatttatgaacAACACTTCAGAGAAAGCCCAGACTACAAAGATTAGTTGGCCTGTTTCTCcttgatttaaatttaacattatCAACATGAAGGAAAACAGAAATCTAAAGAGACCATTTCCACTGTCAAGTTTCCTAATGATGTAAATAACACTAGTTAATGAAAGTAATCAAAATTACATTGTTctatacaaatgcaaaattcTTGTAGTTGCCCTGCACAATGTTGTATATTATACAATCATAGCTCTCATTGGGTGAGTCTTACACATTGAGCCTCCATCTCACGCCTTGTTAAAAtctaattcattttcaaataaataagcttTGTGCACACCCCTCCACCAAcatattacattgcattttagtGCTTGAAAACCCAGTAAGCCTTAGACAATGACTTCagccaaataataaataataataaccgtGCATTTCTTTCATTAACTCCTGTTGCCGGACTCGAGTACAACAAGTCTGATATGCACACAAAGTTTTTCATCAATTAcaaatttaaagattaaaaagttagttaaaaatcacatttcccGATATTATATAAAAGTCTCACCTCCTTTGAACAAGATTTCTCATTGCAAGAACCGTAGAAGGTGAAGAAATAGTGCAAAAGTCTTCTACACATTCAGGAGTTACGTGCATGAATCTTATGAGTATGACCAATACACTCCATCGTTACTACACTTGTGTTGTTTACTACTGTGAAAACTGACTGTTATTAAGATGAAAATGGTTAAATAGCTCACATCATTATAGAACTCCCAGGAGGCTCT

Function

GO: NA

KEGG:

id description
K24057 PDZK1, PDZD1; DZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014347 True 4313 mRNA 0.41 10 10318244 10328231

Neighbor

gene id symbol gene type direction distance location
AMCG00014349 NA coding downstream 16883 10300003 ~ 10301361 (-)
AMCG00014348 NA coding downstream 61869 10241006 ~ 10256375 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding downstream 120493 10192629 ~ 10197751 (-)
AMCG00014341 fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730 coding downstream 274678 10027652 ~ 10043566 (-)
AMCG00014332 NA coding downstream 845985 9467324 ~ 9472259 (-)
AMCG00014354 NA coding upstream 197382 10525613 ~ 10526969 (-)
AMCG00014353 NA coding upstream 324048 10652279 ~ 10708018 (-)
AMCG00014358 NA coding upstream 571777 10900008 ~ 10903196 (-)
AMCG00014359 col4a1,LOC107715912,LOC107557928 coding upstream 633018 10961249 ~ 10974117 (-)
AMCG00014360 NA coding upstream 646234 10974465 ~ 10991144 (-)
G69427 NA non-coding downstream 263969 10053737 ~ 10054275 (-)
G69396 NA non-coding downstream 382846 9935175 ~ 9935398 (-)
G69394 NA non-coding downstream 400909 9916845 ~ 9917335 (-)
G69391 NA non-coding downstream 406223 9901357 ~ 9912021 (-)
G69382 NA non-coding downstream 422664 9894726 ~ 9895580 (-)
G69483 NA non-coding upstream 9656 10337887 ~ 10340946 (-)
G69495 NA non-coding upstream 91949 10420180 ~ 10479009 (-)
G69523 NA non-coding upstream 352839 10681070 ~ 10681292 (-)
G69528 NA non-coding upstream 411185 10739416 ~ 10739930 (-)
G69530 NA non-coding upstream 438369 10766600 ~ 10768258 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 257014 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 300493 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 1001077 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 1934020 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 2159654 8155932 ~ 8158590 (-)
G69537 NA other upstream 468485 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 796798 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 1331780 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 2759377 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 6393842 16722073 ~ 16737877 (-)

Expression


Co-expression Network