AMCG00014351 (LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852)


Basic Information

Item Value
gene id AMCG00014351
gene name LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10308422 ~ 10318002 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014351
TTAGGCTTCAACTAATGACATATGCGCGCACCTTCAACTTGCGTGTATTTACAATGGGAGAAGCCGGAGTtagaagtgtttttatttttcagtaattcACTTCTATAAACACACGGCTAtctcattttttaaaagatcaCCCCTCAGTCTCGACGTGGATTTTGTACTGCACTGGTCAAGATGTCTTTTCTCGTTGACTCCATAATAATGATCACTTCCCAGGTGCTATTCTTTGGCTTTGGGTGGCTCTTCTTTATGAGGCAGTTATTCAAGGACTATGAGGTTCGCCagtatattgtgcaagtagtgTTCTCTGTGACCTTTGCATTTTCTTGCACTATGTTTGAACTCATTATCTTTGAGATACTGGGTGTTTTAAGTAGCACTTCTAGGTATTTTCACTGGAAATTGAATCTGTATGTCATTTTGTTGGTCCTTATATTTGTGGTACCTTTCTACATTGGATACTTTGTGGTCAGCAACATTAGATTATTGCAGAGACAGAAGCTTCTGTTTGCCTGTGTGGTGTGGTTTACCTTCATGTATTTCTTCTGGAAGCTCGGTGACCCATTTCCCATTCTTAGTCCAAAGCATGGGATCCTGTCTATAGAACAACTCATCAGTCGTGTTGGTGTCATAGGAGTGACTCTCATGGCTCTGCTCTCTGGCTTTGGTGCTGTTAACTGCCCTTACACTTACATGTCATATTTCTTGAGGAACGTGACAGACAGTGACATACTGGCCTTGGAGAGAAGGCTGCTCCAGACAATGGACATGATAGTaagcaaaaagaaaagAATCGCTGTGACACGAAGGATGATGTACCAGAGGGGAGAAGACCAGAACAAACAGACAGGCTTCTGGGCAAGGATAAAGAGTGTCACATCCTCACCTCCAGGCAGTGAAACCTTGACTGGGTGGTCAGATCTGACTCTGATTCAGCAGGAGGTCGATGCCTTGGAGGAGCTCAGTCGACAGCTCTTTTTGGAAACTGTTGATCTACAGGCTACCAAGGAGAGGATTGAGTACTCCAAAACATTTCAGGGGAAGTACTTCAACTTCTTAGGTTACTTCTTCTCCATATACTGTGTCTGGAAAATCTTTATGGCCACAATCAACATTGTTTTTGATCGTGTTGGTAAAACAGACCCAGTGACCAGAGGAATTGAGATCACGGTCAACTACCTGGGCATACAGTTTGATGTGAAATTTTGGTCGCAACATATATCCTTCATCCTAGTTGGAATTATTATTGTGACTTCTATCAGAGGCTTATTGATAACACTTACCAAGTTCTTCTATGCCATTTCAAGCAGTAAATCTTCCAATGTCATAGTACTGGTTCTTGCACAAATAATGGGGATGTATTTTGTGTCGTCGGTGCTGCTGATGCGCATGAGCATGCCCTTGGAGTATCGGACCATCGTGACTGAGGTGCTGGGGGAGCTGCAGTTCAGTTTCTATCATCGCTGGTTTGATGTCATCTTCCTGGTCAGTGCTCTGTCCAGTATCTTGTTCTTATATCTCGCACACAAGCAAGCGCCAGAAAAGCACATGGCGTTGTGATACTGTGAGTATCTCAACAGTAGAGCAACTGAGAGAAGAACTcaggtgtgtatatattataatatacacacaaacacaccatgAGCTGTTCCTGAATCAGGAATAGCCTTTTGCAatcagttattgtttttttcatgttgtgtaAGACGAGGgagatatacatttattataagggatttcatttttatattgttgtttgtttcttaattaactGTATTTGCCCTGTTGGAATAAATAATGCTCTCCATTATAATATACTGCCCTTTCAGCCTGTGTGTAATggcaattaaatgtatgcacttaatgtatttgaaacctTTGTTATCcagtattgttttcttaaattacatATCTTAAGCAAGACAATTGATGTAAGTTATAAGCATGTTTACAACGTGATGACAAAGCCTGTTAAAATTCACATACCTAGCATTTAAATTGCAGTTGATAGTGCAGTGCATCGTAAAGTGGCCGGGTAGAGAGTTTAGCTTATTTGAtttagtgtgtgtatgtcatCCCAATGTGAAGAGGTGATCCTATCTGTAACATGTATGtaattatatgtttaatatatttatctgAATAGTTCAGAAgtggaagaaaaatacaataaatatataggaACACAAtctaacattaaaatatttcaaacccTACAGTTTATTAActatcttaaatgtatttttgtatgctaTGTGTTTAATGAGATCCATACATATCTGGTATATCACAAGTTAGGAAATCAGTGTAGTAACTTGATTTGGTAGCTGACAATTAAgttttatgattaaaaaaaaaaaattcaactgTCCAGTACAGAATGCATtagtgcatttttttatttttttttgagGTCTTTAAAGGACTGGGAACCAGAAAAATATGGTACCTAAATGCACCCTTTCTTAAATGCAACTTTTAAATCCCATGTGGGCTTGGagctcttttttatttatcattggggggaactaaataaatgaagtgaTTTCATGCATTTGATCTTTCTGTTCTTTGTGGCGTCTGTTGGGGTAATTCCGACCAAGGAACAACAACTATATTAAACTGGAATAGGGGTTTTGTTTTCGATTCAGATAACACAACTGCATTTTTGCATTATTGTCTGGctgtaatatgtatttcatCAATTGTTCAAACATTTGTTATCTGTAATGGAGGAGAGAAATGTCTTGTAATCTCACAATAGGTGTTTTAGCAAACTGAGAAGTTACACGAGCATGAGAACTAACATGCTCAAAATTAAAGATCATAATGTATCTTATGCCACACAAAtacctttctttgttttcaagCAGCAGGCCTTATGGCCTTTTGCTATTCATAACCTTTCCAGAAGCCACAGAAAACAGGTAGTATGATATGCACTGCTGTACAAAAGTGTTAGGCAGTTTTCTGTTGTGATGagtaagaaaactaaaactttgtgttaaatgcaaaaacacCAGAA

Function

NR:

description
PREDICTED: Golgi pH regulator isoform X1

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K22193 GPR89, GPHR; golgi pH regulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014351 True 3031 mRNA 0.38 14 10308422 10318002

Neighbor

gene id symbol gene type direction distance location
AMCG00014352 NA coding upstream 66161 10229000 ~ 10242261 (+)
AMCG00014344 NA coding upstream 146257 10156465 ~ 10162165 (+)
AMCG00014342 nck2b coding upstream 162720 10125154 ~ 10145702 (+)
AMCG00014343 NA coding upstream 236821 10015503 ~ 10071601 (+)
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding upstream 313751 9993673 ~ 9994671 (+)
AMCG00014350 NA coding downstream 34843 10352845 ~ 10380421 (+)
AMCG00014357 NA coding downstream 347391 10665393 ~ 10671738 (+)
AMCG00014356 NA coding downstream 403082 10721084 ~ 10754147 (+)
AMCG00014355 NA coding downstream 448634 10766636 ~ 10801310 (+)
AMCG00014362 NA coding downstream 743593 11061595 ~ 11086602 (+)
G69457 NA non-coding upstream 84387 10223671 ~ 10224035 (+)
G69431 NA non-coding upstream 252689 10055377 ~ 10055733 (+)
G69428 NA non-coding upstream 253711 10054491 ~ 10054711 (+)
G69400 NA non-coding upstream 280071 9974424 ~ 10028351 (+)
G69384 NA non-coding upstream 398374 9901450 ~ 9910048 (+)
G69499 NA non-coding downstream 175145 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 519202 10837204 ~ 10838230 (+)
G69556 NA non-coding downstream 641324 10959326 ~ 10961929 (+)
G69610 NA non-coding downstream 903068 11221070 ~ 11221274 (+)
G69681 NA non-coding downstream 1323081 11641083 ~ 11641452 (+)
AMCG00014345 NA other upstream 156509 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 299774 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 2825862 7464503 ~ 7482560 (+)
G68848 NA other upstream 2891828 7413640 ~ 7416594 (+)
G68830 NA other upstream 2958955 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 2928307 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3337236 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 3871562 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 3984445 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 4903912 15221914 ~ 15242333 (+)

Expression


Co-expression Network