AMCG00014359 (col4a1,LOC107715912,LOC107557928)



Basic Information


Item Value
gene id AMCG00014359
gene name col4a1,LOC107715912,LOC107557928
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10961249 ~ 10974117 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014359
ATGGTCCACAGGGAAGCCCTGGCATCCCTGGCCTACAGGGACAAAAAGGTTACCCAGGAATGCCTGGGGCCGCTGGTCAGCCTGGCCCCTCGGGACGCCCAGGCCAGGACGGTTTGGTTGGACACCCAGGCCCAGTTGGGCAGAAGGGTGAACCGGGGATTGGTCTTCCAGGGCCTAAGGGAGCCACAGGCCCTGAAGGTGTTCCTGGACTCCAAGGAGAGAAAGGGAACCCAGGATTTCAAGGAATCCCGGGACAGTCGGGACATACGGGACCACCGGGAACTCATGGTGATCCAGGTTTGCCAGGCCCACAGGGCTTTCGGGGCCCTCCTGGTCCCCCAGGGACCGGTGACCCAGGTCAACCTGGACCTGAGGGCCCTCCAGGATTTCCTGGCCCATTTGGTAGGATCACAGGGACAGAAGGGTGAGAAAGGCTACCCTGGTTTTCCAGGCCTGGACATGCCTGGGCCCcagggagagaaggggatcCAGGGCTACTCTGGGAGTCCAGGAGACCGTGGGCTTCCTGGGATACCTGGCCCCTCAGGGAGAGAGGGTTTCCCTGGAGATCCAGGCCCCAAGGGAGAAATGGGAGTGATGGGAACCCCCGGATTCCCTGGATCACAGGGTACTAAAGGCAGCCCTGGTACCCCTGGCCCAAAAGGTGACCAAGGCCTCCCTGGGGTGAGAGGAGAATCTGGTGAACCAGGAGCCAAAGGAGACACAGGGGAGCAGGGTATACCAGGGCCTCCTGGGAATATGACTGATGTGGACATGGAGCACCTGAAGGGAGACAAGGGGGACCCTGGTGACATAGGTGATCCTGGAATAAGAGGATCGCCGGGTTATCAGGGAGAACCAGGCAGCCCAGGAATGCCAGGGAAAGATGGAGATCGAGGCCAACCTGGCCAGCCAGGTGCTAAAGGTGACCAAGGTGAACCAGGACAACCTGGGTTTCCTGGTACCCCAGGCCCAAAGGGTGGCATGGGGGAAATGGGAATACCAGGTTCTATTGGGCCAAAAGGAACCAAAGGTATTTCTGGTACCCCtggggaccctggtacaccagGGCTCGCTGGGGATAAAGGAGTGAAAGGTGATGCAGGATTGCCAGGCATTGGAGTTCCAGGGCCTCAAGGAGAAAAGGCTTCACAGGGTTTCCAGGAGAACCAGGTGAAAAAGGCCACAAGGGCATTGCTGGTGTCCCAGGAATGCCAGGAAAAGCTGGGGATAAAGGAGACACGGGATCCCAAGGATATCGAGGCAAGTGAACAAGGACTTCAGGGTGAATCTGGCACAAAAGGGGAAAAGGGGGACCCTGGCATAGATGGAATCCCAGGAGTACCTGGAGAGAGAGGTGATCCAGGTGTTCCAGGCAAAGGGCTCCCAGGGACACCAGGTCTGACGGGGGATAAAGGGGTGAAATCTTCATGTCTGCACTCTGCCACCTCATTTTCAGTGAAAAGGGTGCAAGGGACAGAGGGAGTGAAGGTCTTCCGGGTATCCCAGGGATTCCAGGAACACCAGGAATCAAAGGGGACAGGGGTACCCCGGGTTACGAAGGTCAGCAGGGCCATCCAGGAGAAAGAGGTCTACCTGGCCCAGCCATGCAGGGGCCCAAAGGAGACAGAGGACTGCCAGGAGAATCTGGGCAACCAGGTGCGCCTGGAGCCCAGGGGCCTCCTGGATACCCAGGGAGTGCTGGGTCCAAAGGAGAGAAAGGAATCCAAGGCTTCAGTGGACCGCCCGGACAGGCAGGGAAACACCGGCCTGCCTGGCCTTAATGGGGAAAAGGGGGACAAGGGATCCCCAGGAGTTGCTGGATTCCCAGGCCCCCCAGGCCCTTTCATATCTGTGAAAGGGGATATTGGTTTCCCAGGCCCCCAGGGGCCGCAAGGGCCTGCTGGACTGAGAGGGTATCCAGGACCAAAAGGACAACAAGGTATGACTGGCCCAACAGGGTTGAAAGGAGAGGATGGCATGCCTGGATTTGATGGAAGACCTGGAATGAAAGGAGAGCCTGGCCCTATTGGCCCTTCAGGTCCCAGGGGATATACAGGACCCCCAGGCCCAGATGGCCCACCTGGCCCAGTGGGTTCTCCAGGGCCTTCATCCAAAGCTCATGGCTTCCTTGTCACCAGACACAGTCAGATGGTGGAGGTGCCATCTTGTCCCCAGGGCACATCTCTGATTTACGATGGCTATTCTCTCCTTTATGTGCAAGGCAATGAAAGATCACATGGACAAGACTTAGGAACAGCCGGCAGCTGCCTCCGAAAGTTCAGCCCCATGCCATTTTTGTTCTGCAACATCAATAATGTTTGTAACTTTGCATCAAGAAATGATTACTCCTACTGGCTGACCTCACCAGAGCCAATGCCAATGAGCATGGCTCCTGTCACTGGGGAGAGCATAAAGCCTTTCATCAGCAGGTGTGCTGTCTGTGAGGCCCCAGCCATGGTCATTGCTGTCCACAGCCAGACAATTCAGATCCCAAACTGCCCCAGTGGATGGGACTCTCTGTGGATTGGATATTCCTTTGTGATGGCCCTGGCCTCCCCCGGATCCTGTCTGGAAGAGTTCCGCAGCGCCCCCTTTATTGAGTGCCACGGCAGAGGCACCTGCAACTACTACGCCAACTCCTACAGCTTCTGGCTAGCTACCATAGATACTGGTGACATGTTCACGAAACCTGTGCCCACGACCCTGAAAGCAGGAGATTTACGAACCCACATCAGTCGATGCCACGTCTGCATGAAGAGGACATAA

Function


symbol description
col4a1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(IV) chain-like isoform X1

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014359 True 2769 mRNA 0.57 24 10961249 10974117

Neighbor


gene id symbol gene type direction distance location
AMCG00014358 NA coding downstream 58053 10900008 ~ 10903196 (-)
AMCG00014353 NA coding downstream 253231 10652279 ~ 10708018 (-)
AMCG00014354 NA coding downstream 434280 10525613 ~ 10526969 (-)
AMCG00014347 NA coding downstream 633018 10318244 ~ 10328231 (-)
AMCG00014349 NA coding downstream 659888 10300003 ~ 10301361 (-)
AMCG00014360 NA coding upstream 348 10974465 ~ 10991144 (-)
AMCG00014364 NA coding upstream 114630 11088747 ~ 11096433 (-)
AMCG00014368 NA coding upstream 130861 11104978 ~ 11121831 (-)
AMCG00014366 NA coding upstream 165335 11139452 ~ 11144825 (-)
AMCG00014367 ankrd10,LOC106586677 coding upstream 193523 11167640 ~ 11175442 (-)
G69539 NA non-coding downstream 140177 10815771 ~ 10821072 (-)
G69536 NA non-coding downstream 165060 10795883 ~ 10796189 (-)
G69535 NA non-coding downstream 168103 10792919 ~ 10793146 (-)
G69532 NA non-coding downstream 183808 10777051 ~ 10777441 (-)
G69531 NA non-coding downstream 187827 10773183 ~ 10773422 (-)
G69743 NA non-coding upstream 795573 11769690 ~ 11771393 (-)
G69759 NA non-coding upstream 904980 11879097 ~ 11880456 (-)
G69849 NA non-coding upstream 1996136 12970253 ~ 12970555 (-)
G69896 NA non-coding upstream 2111246 13085363 ~ 13086345 (-)
G69950 NA non-coding upstream 2327807 13301924 ~ 13302379 (-)
G69537 NA other downstream 163102 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 900019 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 943498 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 1644082 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 2577025 8383285 ~ 8384224 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 150912 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 685894 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 2113491 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 5747956 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 6472751 17446868 ~ 17462290 (-)

Expression



Co-expression Network