AMCG00014365 (ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920)


Basic Information

Item Value
gene id AMCG00014365
gene name ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11125029 ~ 11137086 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014365
CGGGGAAGGGATCCGCTCTGGCTTTAGCTGGTCAATGCtcttttactgtttatttataagCTTGCTAGTGGACAGACGTTGCCTCCCATTGCGGGATGTCTACTCCAGCAAGAAGGCGGCTTATGAGGGATTTTAAACGtaacaCGAATGAGTGCAGGGCTGAGTGTCCGTGTGTCCGCAGGCTGCAGGAGGACCCCCCGGCCGGCGTGAGCGGAGCCCCGTCCGAGAACAACATCCTGGTGTGGAATGCGGTCATATTCGGcCCTGAGGGGACACCTTATGAAGATGGCACTTTTAAGCTGACAGTTGAGTTCACGGAAGAATACCCAAATAAACCACCAACAGTTAGATTTgtttcaaaaatgtttcatCCAAATGGTATGATTTTGTCAATATTAACCTATACATACATGACACGGGTCTCCACCTTTCAAATTCACTGTTGGATGAACCGAACCCAAACAGTCCTGCTAACAGCCAAGCTGCTCAGCTTtaccaggaaaacaaaagagaatATGAAAAACGAGTTTCAGCGATTGTTGAACAAAGCTGGAGAGACAGCTGACCACATACCTTCTCAAGAGCACTAAACCTTTTCTTTaggttgtgttgtttttgtaagcaCTTTGCCTCAGAATTGCGCTGTTGTATGTGTGCAAGCTCTGGTGTACGTTGTCCCTGGAAGATTATTGATTTGAGCACAGTCACTACATTCTTTCTTGCTATTGAAGCTTGATTTTCTAGCAattcttttgttattttgtttgagaTCTGTCTTGAAATTTTGGTTGTAGAATTTCAATGATGCccccattaataaataagtctGGCAGAttttgttgaaatatatatttttttttactatacaACTAATTATATAGTAAGACCTTTTATTTTGGTTCATATTTTTGTACTAATTTGCCCCTTGTTCCTGCTCTGGGGGGTTGAATAGGACACACATGCCTAATGTTTAATCGGCTATATTTTTGTGAACCTCCCCTAATTCTTTTCCATAATTTAATCTAGGCTATTTTACAAGGCCATTTAAAATGATCCTGCCATACTGTGAGAGAATGTACAATGTCTGTTTTTAAGTActcctgtgtatatatatatatatagtacatttcaGAAGATATGGTGCACAGGTTTTGCACAAGTGATCCATGTATGaatgctgtaaataaaaatggaaaatcccTTTATTAAAGAAGCATCTTTTTATTGAATAATATTCCATAGGTTGGGTATTTTTGGTATAACAGCATGCAGTACAGCAGGTTTCATCATCACATTATGAGAATAGGTAGTTGCCCCTCAAACATCTCTTCTGTCATTAAATGGAAGAAAACTGATTCTGTTTACCAGCAGATATTCCAGGCTGTTAATTGAAGCATAATATGATGTCAatagaaactaaataaaataaatgacattttattttattctcactGCTGGTTTGGGTGGCCCATTCTCACTACATATGCTGTTTTGGTTTACCACTCTACACTATAACTTTTTACAGTTCCCTatacttttgtaatacaattcCTAAACATGATTCAACTTGGATTAAGGCCTCAGCCAGATACTGTGCAATGTATATACACGTTAAACCATTAAAATCATCAACTTTAATCTGGAGGTATGGAGACCCTATTGCTCATTTTGTTCTGGTGGATTAATTTCTCTTTCCTGTTGAACTAAAGATCACCCCCTGGGGTGAATGTTCTGTCAAACAAGATAACggattttacaatattttaaaacaatcttgtAAATCTCTTCTGGTGCGGACACTGCTGTGGAGAATAgacaagaaaacacatttttatctCCCTTGACGGTAAATGACGATTTATCATTTTGCTTTgccaaatacacaaattaaataaatcctatGGTTATCATACACTATGATGGCTCATCGCAGAGTAAGCTGTACTATACTGTGCATTGTTTTCTGCTACAGGAAGCTAGTGGGTTAAAATAAAGTTGATTGTTATACTTTGCAATTTATGAATGCTGGGGGAATTACACTGGTATATGATTTTAGTTTCAGAGAAAAAGGTGTCCAATCAAATTGGCTCCTTTCTGTTTGAAGATTTTTCTGAAGGCGAGGGAAAGGAATATTGTGTTGGGTTCATCCCTTTACAAGCAATGGTGGGAAAAAGGCAAGCACTACTTTGATCTTCAAAAAGTGTATGTTTTAAGATATCTGCTATAGTGCTTACCAGGATTTTCAATTTACTCACTTACTCTcccatatttttcatttatattcttTATCCAGGGATTTCCTGTAGTTTATCATGAAGTACAGTATGTTGCTTCACTGCTGGAATCAGGTTCCAACCTTTTTGCATGTAACACATGGGAGTAACAGACATGAAAAAGGGGGCTGCAAATATCCTTGAGGTTGATGATAGTCTGAATACAGGGAGTAGAAGTGTAGTGTTACTAGCCATTTACTTTGATGTTGATGCAGGGGTTAATCTCTTTCAGGATTTCCAAAGTGATATCCCCTCAGGGGACAAGGCACAGACAATATTTCAGAAACTGTTCATTTCTTCTATTTTAATAATGGTGGTatcacatatttacattttgaatacgAAAGCGCTCATGACtcaaatcacacacaaatgCTGCCAGCTGAACTTAAAATACAGGAAGTGCAATTTCacataaaaagtacattttttacatGTACTAAGATTTTTCTTCCAACAAAACCAGAACACATTTGGAGTCTTAagttctaaacaaaataaacatgttggtATTCATGTagttcacataaaaaaataatagtgtGCAAGGACAGAACAAAAATCctacaataaaatgtacaatgccTTCAACGTAAAACAAACTATTGGTGCATGGATGTTTTCAGCAGAGaaccatgtattttatttgcattcattCTTATTAAAACTCAAACTGTTAAATTGGGCTTGTTATTCCAAGAACTGGAATGTTTTCACTTCCTATTTGTTCCTTTATTGTTTACCCATAAGCTCAGCTAATTACTTggttaaaaaacattaacagaTAGGCATTTACCCTCAAGACCCTGAATGTAAGCATTACTCATACTGTTAAGGTTGTCTTTTACACACTTTGTGTAACTAGCCATGTAAGTGGCGGGGGGGATTTCTATGGACGAACAAACTCGTTGTGATTCTCTGAAGTTCCACCTGAATACATGAGAACAGGACGTTTCCCAGGTACCCTTCAGCAAAATGATGCACTACATGACACAGTATTCAGTACTGTAGTAGTTCAACATCAGTGGCTTCAAAAAAGTCTTACCTTGGAGACATAATCTTGTAGATTtaagagtgaaaataaaaatcagctgCTTTCCTTCCTGTCTGCAACCATTATAGCAGAGTTCATGCAAAGACTAACTTTATTCTCCTTGTGTTTGTGGACAGGCATCTGCCAGTCGGGTGATTAAAACCTTGCTCAGTGTGGATACTTGCTTGCTTATATGTGGGTTACAACTGGTAACATATTTGAATGGGGACTCCAACATTAAGGGAAGAAAACTAATCAGCCATGTTCTTcactattatatttttaaaatactgactTACCACAAATGCAGCAGCTAGTCTGTGATTAATAGCAACCACTTAACAATAGTGTTGGCATCTCAAAATAGTTTACCCCAGTGATACACTTTATGTGCAAAAGGGAAGGGGACGAGGTGAAGTGTGGAATTATTGCTTTGTAAAGATTTCACAAAAAGCAAACGTGGGAAGTGCTCCCTGTGACAAAAGCAAATGAGGTGAACCGTGTAGCGTAACACATTTCAGAACACGGTTAGATCTatgtaattaatacaaacagTAGCACGTGGAAGACAAACATTAGGAATCAAGGATCTTTGGGGAATctatataatctttttttagaaaaaacatcaatacaatttattttattcacctTCCAGTCATTAAAATTATGTTGAAcactagttttattttatttttaacggccaattatttttcctctttatcCTGCAAtttgtaggttttattttttctccaataGTCCCTGTATTGACTGATGGACCTGGGCAATGCCAAGAACCTCAGAGCAGCCTCTGAGACTACTGAGAGGTCACTTTTTGACCATACAAACTGAAGCAGCTGAGCTTTGGTACCAATAAGAGGACAAAGACCCTGCTAAAAATGCCCAGTCCTGTAAATGCCATTTCGACCAAACAACTAGTGCAAGGGAAGATGAAGACCCCCAGGCCAACTCAATTGCACCCAATCCCATTTGGGCAGTTTAATACTATTACTTGGGTCTCAGCAAGTGGCACTGCCTTGATTCGAACCAGCGATCTCCAGGTCTCAGCGCTCATCCTTCACATTACTGTTGGAGCTGCATacactgctgctgttttgtCATTAATTGATAGATCTTTCCGTCTCATATCTTTCCTTCTAACCCTGTGTGCTTAAAGGTAAGGCTGGACTTAGTCAGAGAGCTTCTGAATACAAGAGCCCCACCCCTTCCCAAATTTCAAAAATGTCAACACTCCTTGCAATTGAAAGAACAATGACCCTCATCATAAATATGCACATTTGTGGTGTTCTCTGTCCATGTTACAACACTTAACTACCTATTGTATGCCCTTTCCTTTTTGGATTTCTCAAGAGCTTTGTCCATGGTTTTCTCATTCTCTCCCCTGCATTTGGGGCAGTACCATTTGCCCTTGGGCTTGTGATTGAGTCCAACGCAAGAGAAGTGAAACCATTCGATGGGGCATTCGTCGTTGTCGCAGCCGATCATCTCTCCGTACGATACCTGGTTGCACAGGCAATATGTGGGCTCATTGGGATCAATGGGCAGGTCTGCAGGAGAGGCCTCCCTCTCGGCTTTGGCTTTTGACCGCTTCTTCTTCTTCGAAGTCTTAGCCTTCTTCTCCTTGGGTGTCCCGGAGCTGATTTCATCTCCATGGTCCAGGTTGTTGTTGGAGTTCTCTCGGTTCTCGTTGTTCTTCTGCCGCCTGGACCGCTTGTTGCTGTGCTTTTCGTTGGTGCCCGTGGACTCATTTCTAGTTTTCTCCTGGCTAGTCTTGCCTGGAGTGACCAAGCCCTCATTGGGCTCTTGGCAGGCATCGAAGAGTTCCACATGGCTCTCCACTTGCCTGCTCCGGTTCTCGACAAGCTCCACCATCTGGCTGACGATCTGGATCTTCTCATCACCGAGCTCTTGGCTGCGGATCAGTGCTCTCTGGATGCAGTGCAACAACCTCTTCTTCTGCACCGGGTCCGCCTCCTTTTTGTGCTTCTCGTAGATCTCATCCAGCTTACCTTGGTATTTCGCGTCGATTTCCCTCATTAAAGACACGTTTCTCTGGAGGTCGAAAGGCAGCGACTCGACCAAGTCCAAATACTCCTCCACATAGTTCGCAACGTGGAGCGGGTCCCCGTTAGCAGGGCTCAGCATTTTGTGATTTTCCTCGCACAATGAACACGAAATGGGCGCAATCTAGCAGAAAAACAGCAACTACATCTGGTTATTCGCAGTACGGCGGACAGATCACCATCTCCTTCACTGCAGCCCAGGAGTAGAAGCAGACTGAATGGCTGTCAGACAACACAGTCTAGTGGAGGTTCAGCTGAAACGCGTTGAAAAAGTCCTCTTCCCTGCAGTTCAGACACCGAGGAAGGATCCCGGACGATTCCCCCGCCGATAGAGCTTGTCGGGATCCCGTCGAGTGGGTCGTCTTTCCCCCGTTTGGTGGCAAATTCGCCGATTAGTGCCTCTGTTGCTACTGCACTTGATCCAACGTGGAAAAACCAAATACCAGTTTCAA
>TU86933
GTGGGTGGGACGGGGAAGGGATCCGCTCTGGCTTTAGCTGGTCAATGCtcttttactgtttatttataagCTTGCTAGTGGACAGACGTTGCCTCCCATTGCGGGATGTCTACTCCAGCAAGAAGGCGGCTTATGAGGGATTTTAAACGGTAGAGTTCCCTGGGCGCAGCTCTTAATTGATCTCCTATTCATGTGTGTCACAGCCGGAAAACAGCTGTGTTTGTGACggggaacaaacaaacaaacaaacatggcgGCCGTCGACGACTAATAAGCCTCAGGACAACTTTGACGAGAATCAACTGCTGCTCCTAACCGCTTTCAAATGGGCTCGTTTGCTATTGCAGATATGCGTGTCCCTGTCCTAAATCAGTAGATTCACAGGTCTCACAGTGCTGTTGTAATCATAGTGATAGTACAGTGTAAACAAAGTTAGTCTTATATTGTAGTCCAGATGCTTTGTCACgtacattttcagttaaatcCATACATCTCATATTGTaatatgtgtattaaaataattaaagtaacaCGAATGAGTGCAGGGCTGAGTGTCCGTGTGTCCGCAGGCTGCAGGAGGACCCCCCGGCCGGCGTGAGCGGAGCCCCGTCCGAGAACAACATCCTGGTGTGGAATGCGGTCATATTCGGcCCTGAGGGGACACCTTATGAAGATGGCACTTTTAAGCTGACAGTTGAGTTCACGGAAGAATACCCAAATAAACCACCAACAGTTAGATTTgtttcaaaaatgtttcatCCAAATGTGTATGCAGATGGTAGCATATGCCTTGATATTCTGCAGAATCGCTGGAGTCCGACTTATGATGTATCATCAATTCTGACTTCTATACAGTCACTGTTGGATGAACCGAACCCAAACAGTCCTGCTAACAGCCAAGCTGCTCAGCTTtaccaggaaaacaaaagagaatATGAAAAACGAGTTTCAGCGATTGTTGAACAAAGCTGGAGAGACAGCTGACCACATACCTTCTCAAGAGCACTAAACCTTTTCTTTaggttgtgttgtttttgtaagcaCTTTGCCTCAGAATTGCGCTGTTGTATGTGTGCAAGCTCTGGTGTACGTTGTCCCTGGAAGATTATTGATTTGAGCACAGTCACTACATTCTTTCTTGCTATTGAAGCTTGATTTTCTAGCAattcttttgttattttgtttgagaTCTGTCTTGAAATTTTGGTTGTAGAATTTCAATGATGCccccattaataaataagtctGGCAGAttttgttgaaatatatatttttttttactatacaACTAATTATATAGTAAGACCTTTTATTTTGGTTCATATTTTTGTACTAATTTGCCCCTTGTTCCTGCTCTGGGGGGTTGAATAGGACACACATGCCTAATGTTTAATCGGCTATATTTTTGTGAACCTCCCCTAATTCTTTTCCATAATTTAATCTAGGCTATTTTACAAGGCCATTTAAAATGATCCTGCCATACTGTGAGAGAATGTACAATGTCTGTTTTTAAGTActcctgtgtatatatatatatatagtacatttcaGAAGATATGGTGCACAGGTTTTGCACAAGTGATCCATGTATGaatgctgtaaataaaaatggaaaatcccTTTATTAAAG

Function

symbol description
ube2al Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A).
ube2a Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K19197 ING1; inhibitor of growth protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014365 True 5842 mRNA 0.41 6 11125029 11137076
TU86933 False 1630 lncRNA 0.41 5 11132788 11137086

Neighbor

gene id symbol gene type direction distance location
AMCG00014368 NA coding downstream 3198 11104978 ~ 11121831 (-)
AMCG00014364 NA coding downstream 28596 11088747 ~ 11096433 (-)
AMCG00014360 NA coding downstream 133885 10974465 ~ 10991144 (-)
AMCG00014359 col4a1,LOC107715912,LOC107557928 coding downstream 150912 10961249 ~ 10974117 (-)
AMCG00014358 NA coding downstream 221833 10900008 ~ 10903196 (-)
AMCG00014366 NA coding upstream 2366 11139452 ~ 11144825 (-)
AMCG00014367 ankrd10,LOC106586677 coding upstream 30554 11167640 ~ 11175442 (-)
AMCG00014372 atp11a,LOC106575518 coding upstream 322527 11459613 ~ 11502601 (-)
AMCG00014380 rcbtb1 coding upstream 560103 11697189 ~ 11722453 (-)
AMCG00014379 spryd7,LOC108430519,LOC107600395,LOC108266652 coding upstream 613105 11750191 ~ 11755461 (-)
G69539 NA non-coding downstream 303957 10815771 ~ 10821072 (-)
G69536 NA non-coding downstream 328840 10795883 ~ 10796189 (-)
G69535 NA non-coding downstream 331883 10792919 ~ 10793146 (-)
G69532 NA non-coding downstream 347588 10777051 ~ 10777441 (-)
G69531 NA non-coding downstream 351607 10773183 ~ 10773422 (-)
G69743 NA non-coding upstream 632604 11769690 ~ 11771393 (-)
G69759 NA non-coding upstream 742011 11879097 ~ 11880456 (-)
G69849 NA non-coding upstream 1833167 12970253 ~ 12970555 (-)
G69896 NA non-coding upstream 1948277 13085363 ~ 13086345 (-)
G69950 NA non-coding upstream 2164838 13301924 ~ 13302379 (-)
G69537 NA other downstream 326882 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 1063799 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 1107278 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 1807862 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 2740805 8383285 ~ 8384224 (-)
AMCG00014374 NA other upstream 522925 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 1950522 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 5584987 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 6309782 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 6452181 17589267 ~ 17621151 (-)

Expression


Co-expression Network