AMCG00014369 (arhgef7a,LOC107668898,LOC107712280,LOC107569023)


Basic Information

Item Value
gene id AMCG00014369
gene name arhgef7a,LOC107668898,LOC107712280,LOC107569023
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11177961 ~ 11220774 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014369
CAACTGGATCGGATACACCGTGAATGTAGCCATGAACTCGGCCGAGCAGACCGTTACTTGGCTCATTACTCTGGGGGTCCTGGAATCGCCGAAAAAGACCATCTCGGATCCAGAAGGCTTTCTGCAGTCGTCCCTGAAAGATGGTGTGGTCCTCTGCAGGCTGCTGGAGCGGCTGCGCCCCGGCGCTATCGATAAAATTTACCAGGAACCGAGGAGCGACAGCGAGTGTCTGAGCAACATCAGGGAGTTCCTCAAAGCCTGCGGCTCCTTCCGAGTGGAGACATTTGATGCCAATGACCTGTTTCAGGGTCAGAACTTCAGCAAAGTCTTGAATTCCCTGGTGGCACTAAATAAAGTAACCGCAGATATAGGCGTGGGAAGTGACTCTGTATGTGCTCGCCACTCCTCCTCCCACCGGATCAAGTCCTTTGATTCCCTGGGCTCACAGTCCTCCCTCAGCAGATCCTCCAAGCTTTTGCAGAACCAGTACCGCAGCTTGGACATGTCGGACAACAGCAACCATCAGCTGGTAGTGAAAGCACGCTTCAACTTCCAGCAGACCAATGAGGACGAGCTTTCCTTCACCAAGGGAGACATCATTAATGTCTCCAGGGTGGAGGAGGGTGGCTGGTGGGAGGGGACCTATAACGGCAAGACCGGCTGGTTCCCCAGCAACTACGTCCGGGAAATCAAAGCTAACGAAAAACCAGTCTCTCCGAAATCTGGAACTCTCAAAAGCCCTCCAAAAGGCTTCGATACCTCTGCAATCAGTAAGACCTATTACAATTTGgtgCTACAGAACATTCTAGAAACAGAGACTGAATATGCCAGGGAACTCCAGAGCCTTCTGTCCAATTACCTGCGCTCTCTGCAAAGTACTGAGAAGTTAAGCTCTTCTGACATCACTCATATACTGGGAAACCTGGAAGAGATCAGCACTTTCCAGCAGATGCTTGTCCAGTCTCTAGAGGAGTGCACAAAGTTGCCCGAAGCACAGCAGAGGGTGGGTGGTTTCTTCCTGAACCTCATGCCCCAGATGAAGAACCTCTATGTGGCCTACTGTGCCAATCATCCATCAGCGGTCAATGTCCTCACGGAGCACAGCGAAGAGCTGGGCGAGTTCATGGAAATGAAAGGTGCCAGCAGTCCTGGGATCCTTATGCTAACCACAGGCCTGAGCAAGCCCTTCATGAGACTTGACAGATACCCCACCCTGctgaaggagctggagagacACATGGAGGCCCAGTGTCAGGAGGTGCGCAAGAGAAaggagctggagctgcagaTCCTGACCGAGTCCATCCGCAGCTGGGAGGGAGAGGACATCAAGACGCTGGGCTCTGTCCTCTACATGTCTCACGTCATGATCCAGTGTGCTGGCAGTGAGGAGAAGAATGAAAGGTACCTCCTGCTGTTTCCCCATGTGTTACTAATGCTGTCTGCCAGCCCCAGAATGAGTGGATTCATTTATCAGGGTAAACTACCACTAACAGGAATGACAATCTCCAAACTAGAAGAAAGTGAAACtcacaaaaatgcatttgaaatttcTGGCAATATGATCGAACGTATATTGGTGTCATGCAACAACCAGCAGGATCTGCAAGACTGGGTGGATCACCTGCACAAGCAGACTAAAGTCACCACAATGGGAACTCCAACAATCAAACCACAGTCTGTACCCTGCCACACAGATCTCAGTAAAAGCCCTAAAACCATGAAGAAGCTACTCCCTAAACGCAAGCCGGAGAGGAAACCGTCCGATGAAGAGTTTGCATTGAGAAAAAGTACGGCAGCACTTGAGGAGGATGCACAAATTCTCAAAGTAATTGAGGCGTACTGCACTAGTGCCAAAACACGACAGACACTTAATTCAACATGGCAAGGCACTGACCTGATGCATAATCACGTCTTGGCTGATGACGACCAATCCAGCCTAGAATCACTGGGCCGTCGCAGTAGCCTTTCCCGCTTGGAGCCCTCCGACCTCTCCGAAGACTCAGACTATGACAGTATATGGACAGCCCATAGTTACAGAATGGGTTCGACAACTCGGTCTAGGAAGGAATCGGGCCCTCATATGCTATTTCCAGAAGAGGAGAAGATTATTGTGGAAGAGACCAAAAGCAACGGTCAGACTGTAATTGAAGAGAAGAGCCTGGTGGACACAGTCTATGCATTAAAGGACGAAGTACAGGAACTGAAACAGGATaacaaaaagatgaaaaagtCTCTCGAAGAGGAGCAGAGAGCCCGTAAAGAATTGGAAAAGGTTGTGAGGAAAGTATTAAAGAATATGAATGATCCTTCCTGGGATGAGACCAATTTGTAGAGAGGTTTCAGctggtttacatcaaaagcAGACGGGCCGTTTTCAGCAGGACACTCTAAAACAGATTAAGACATCCACTCGATCCCGGTCAAATGAGCGCAAGCCTATATTGGAAAATTAACCTGAGCCTTCAGGGATCCAGCAAACCATCCGTCCCCAACGCTGCAGCACTGATTGAGCCATAGAACAAGACCACATTGGAAGTGTGTACGATCTGACCATACAGCATCGCTTGAGGGGCTGATGGGTGGCTTGCCGAGGCATCCCCTGACCAAACAGCATTAGCTTTTCACCTGTGTTACCTGAGCCAGAGTTACCCAGGGGCAAATGGTGGAAAGTGCTGAGTATGAAACATCAGATCCAGATCTTCACACCCGTGAGCTCTGGTACTCCtcacttttcttgttttgttttttttatttgcgaTCAGATTTCAGATTAGCcacaaaaattacaaatctgCACAAATGACACATGTTATTGGTACTGGATGTTTCAATCTGGCCAGAGAGACTAAAACACAGGGATTTCAAAGAGCGTAGAATGGAGTTTCAATGCGTGTGATCCGGTGAAGTGGAGATTTTGGCTTCAAATGTGTGAAGAGATGGCTCGGTTACTGCCTTCATTTAACTTCAGAGCACTTCAATTTCTGCTGCTCTCAATCTTCAGGAGCACATAACCGAGATATAgaattaacttgttttatttttttatggaaaaaaaaacagcaatacaacTCTCTGATGAATACTGGAAAATGTTCAGGTAAATTATATACTGGTCAACTTTTGGAACCTTTTctagatgtttttgttttgcaattacctcattttgtttctgtatattttttgcggggaggggtgtgtgtgtgttttttattgtttactaTAAGATTCTTAAAACATAcctttatactgtaaatatcaCATACAATTGTGACTTTGGAAGTGGATTTCTTGATATTGCTCCTATATCTGGCCGTCTTTCTTAAGATCAGTTGCTCTAAACAAAACCCGTCCCTTTGACCTTCACAGGCCTTCGACGCAtccgatatgacttaaaaagaTTTCTAAAAGATGCCTGGAAAGTCTTTTTGCATAGAAATCTTCAAagaatatttcatgttttccctaaattatgtatttaaattaacttgctgtaattaaaacacCACATAAGCACTGTAGGGTTCAGAACAAAGAATGTCCTTCATATTTCTTGTATAATTGTTATCAGAAATCCTGTCCTGTGaccactgtatttatttaatttctctcaCCTACTAACTTG

Function

symbol description
arhgef7a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in lamellipodium. Orthologous to human ARHGEF7 (Rho guanine nucleotide exchange factor 7).

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 7-like isoform X2

GO: NA

KEGG:

id description
K13710 ARHGEF7, PIXB; Rho guanine nucleotide exchange factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014369 True 3625 mRNA 0.46 20 11177961 11220774

Neighbor

gene id symbol gene type direction distance location
AMCG00014361 NA coding upstream 48601 11125399 ~ 11129360 (+)
AMCG00014363 LOC106582132 coding upstream 72111 11097567 ~ 11105850 (+)
AMCG00014362 NA coding upstream 91359 11061595 ~ 11086602 (+)
AMCG00014355 NA coding upstream 376651 10766636 ~ 10801310 (+)
AMCG00014356 NA coding upstream 423814 10721084 ~ 10754147 (+)
AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding downstream 171615 11392389 ~ 11393405 (+)
AMCG00014371 tubgcp3 coding downstream 319658 11540432 ~ 11561870 (+)
AMCG00014373 NA coding downstream 385194 11605968 ~ 11640460 (+)
AMCG00014376 cab39l,LOC103356757 coding downstream 423254 11644028 ~ 11659546 (+)
AMCG00014378 NA coding downstream 447382 11668156 ~ 11678181 (+)
G69556 NA non-coding upstream 216032 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 339731 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 684565 10493147 ~ 10493396 (+)
G69457 NA non-coding upstream 953926 10223671 ~ 10224035 (+)
G69431 NA non-coding upstream 1122228 10055377 ~ 10055733 (+)
G69610 NA non-coding downstream 296 11221070 ~ 11221274 (+)
G69681 NA non-coding downstream 420309 11641083 ~ 11641452 (+)
G69722 NA non-coding downstream 498544 11719318 ~ 11722767 (+)
G69739 NA non-coding downstream 563091 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 1379330 12600104 ~ 12600313 (+)
AMCG00014345 NA other upstream 1026048 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1169313 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 3695401 7464503 ~ 7482560 (+)
G68848 NA other upstream 3761367 7413640 ~ 7416594 (+)
G68830 NA other upstream 3828494 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 2025535 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 2434464 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 2968790 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 3081673 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 4001140 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location