AMCG00014371 (tubgcp3)


Basic Information

Item Value
gene id AMCG00014371
gene name tubgcp3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11540432 ~ 11561870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014371
GCATTGTGGGAAGCTTCAGAGTAGCACAGAGAGGCGCTTTCGGCGGGTTCAGTTAAAATGGCGCCGTTGCTAAGAGCGGAAAGCCACGGCACACATAACGGCTGCAGGTAGATCTGGACACCGAAACGGAGTCGTGTTAGACAGTTCAACGCCATGGCAGGTCTGGATCAAAAATCCCCCAACGTGTTGTTACAGAGTCTCTGTTGCAAGATTACCGGGAAGAGCGAAGCTGAAGTTGCGCACCAGTTCCAGTATGCCGTTCGAGTGATCGGGAGCAACTACGCACCTACAATCGAACGGGATGAGTTTCTTGTTTCTgaaaagataaagaaagaaTTTGTGAAGCAAAGGAGAGAGGCAGATGCTGCACTTTTTTCTGAACTTCACAGAAAACTACAATCAcagGGGGTGTTAAAGAATAGATGGTCCATACTGTACCTGCTGCTCAGCCTTTGCGAGGATCCACGTAAACCTGCTACTAGGGTTGCCAATTATGCAACACTGTTTGCTCAGGCTTTGCCGAGAGATGCCCACTCCACCCCATACTACTGTGCCAGGCCGCAAAGCCTGCCGCTCAGCTACCCTGATAGGAATCTGTGTACGCAGAGTGGGGGCAGCATGGGCAGCAGTGGGGTCAGCAGCCTTGGGATTTATGCAATGAACGGGCCCACACCAACCCCACAGTCGCTGCCGGGCGGGTCCCAGGTGGTTGGCGACTCTCTCCGCCAGCAGCTGGGCGCTCGGTTGGCCTGGAACCTGccctctgcctccccctctGCTCCAGCACCTACCTCAAGAGGCCTTCCCAACACTGCGGGCCGCAGCGCGCCCAGACAGCGGCGGGACGGGGAAGCAAGCGgCACTGTTGAAATCAGTGAAGCTGCCCTAGTCAGAGACATTTTATATGTCTTCCAGGGGATTGATGGCAAGTTCATCAAAATGTGCAGTCCTGAAAACTGCTATAAAATTGATGCCAAGATTGCGATATCAAAGTCCCTTCGAGACATCACTAGCAGACTGGCAGAGCTGGGCTGGCTGCATAACAAAGTGAGAAAGTACACCGACCAGAGGAGCCTTGACCGGGCATTCGGGCTTGTTGGCCAGAGCTTCTGTGCTGCCCTTCATCAGGAACTCAAGGAGTACTACAGACTCCTCTCCGTTTTACATTCACAGCTGCAAGTTGAGGATGACCAGGGAGTGAATGTGGGAGTCGAAAGCAGTTTGACACTCCGGCGCCTTCTGGTGTGGACTTACGACCCCAAGATCAGACTGAAAACTCTGGCAGCTCTTGTAGATTACTGTCAAGGGAGGAAAGGGGGAGAGCTGGCCTCGACTGTCCATGCGTACGGCAAAACCGGGGATCCGAACATGAGAGCGCTGGTGCAGCACATCCTCGGCCTGGTGTCCCACCCCATCCTCAACTTCCTGTACCGCTGGATTTATGATGGAGAGCTGGAGGATACTTACCACGAGTTTTTTGTCGCCTCCGACCCGACAGTGAAGACCGACCGACTCTGGCATGATAAGTACACTCTGAGGAAATCCATGATGCCCTCGTTTATAACTATGGATCAAGCCCGGAAGGTTCTTCTCATAGGAAAATCAATTAACTTCTTGCATCAAGTTTGCCACGACCGGACTCCTCCTGGGAAAATAACTCCAACATCAAAATCTGCTGATTCTCCCAAAGATGCTGCTGAGCTATTCACTGACTTGGAAGGGGCCTTCCAAGGGAGAATTGATGCGGCCTATTTTGAGACCAGTAAATATCTCCTGGATGTCCTCAACAAGAATTACCTCCTGCTGGAACACATGCAGGCCATGAGGCGCTACTTACTGCTGGGCCAAGGAGACTTCATACGCCACTTAATGGATCTGCTGAAACCAGAACTGGCAAGGCCAGCCACCACTTTGTACCAGCACAACCTGACGGGCATCCTGGAGACTGCAGTGAGGGCCACAAATGCGCAGTTTGACAGCCCTGAGATCCTTAAACGGCTAGACGTCAGACTTCTTGAGGTATCGCCTGGCGACACGGGTTGGGATGTGTTCAGTCTGGATTACCACGTCGAAGGCCCCATTGCCACGGTTTTCACTCGGGAGTGTATGAGCCATTACCTCAGGGTGTTCAACTTCCTCTGGAGAGCAAAACGCATGGAATACATTCTCACAGACATCTGGAAGGGCCAAATGTGCAACGCCAAGCTGCTCAAGGGCATGCCAGAGCTCTCCGGAGTATTACATCAGTGTCACATCCTGGCATCAGAAATGGTTCACTTTATTCACCAGAtgcaatattacattacatttgagGTGCTGGAGTGCTCTTGTGATGAACTGTGGAACAAAGTCCAGCAGGCCCAAGACTTAGACCACATCATTGCTGCTCACGAAGTGTTCCTTGATACCATCATATCCCGCTGTTTGCTGGACACCAATTCCAGGGCCCTCCTGAACCAGCTGAGAGCCATCTTTGACCAGATCATTGAGTTCCAGAACGCCCAAGATGCTCTGTACCGCGCCGCGCTCGAGGAGCTGCAGCTCCGACTGCAGTTCGAGGAGAAGAAGAGACAGCGGGAGACGGAGGGTGAGTGGGGAGTGACAGCAGCACaggaagaagaggagaagaaaCGAGTTCAGGAATTTCAAGACGCCATACCAAAAATGCGCTCCCAGCTTCGAATACTCACACACTTCTACCAGGGTATCGTCCAGCAGTTCTTGGTGCTGCTCATGACCAGTTCGGATGAAAGCCTGCAGTTTCTGAGCTTCCGTCTGGATTTCAATGAGCACTATAAAGCCAGGGAGCCCCGGCTCCGTGCCTCTCTGGGAGCAACACGGGGGCGACGCAATCCCAGCATGTAGACCACCTACCTGTAGCGTTTTATACCAATTTTCGATAGGGCTACACTGACCTTTTTACACAGTGTCAAACACCTCCCGAGGTTCCATGTCATTGCCAAACAGTGCAGACGCTCACTAAATGCTCCAGAAAGCAGAGTGGTTAAAACAATGTGGAATTTGAGTAGCACGAGGTCACAATGCTGTCTGTTTTCTGCTCGTCTGATTCTGTGTAGAGAAAAGAGatgattgttttgctttttttctcctttgtttaCAGTTCTGAAATCTTACATTACGTGGTGCGATTCATGTCAGTGGTCTCCTGTCTCTCCATTTTTTTAACCAGTTTTGcactttaaagaaaatgtttccacCTTCTGCCCATGTCTGTGCCCAGGCCCTCTGTCCTAATATCAGCCCGAGTCAAATTAACTTAATCTTTGTATTTGCatatatgaaaacaatgtttttatctctattttaataatgcacTAGCTATAGCTGAGCACATATTCCTCAGTATTGATGCAGATTCCCATCCTCCTTGTACCTCTGTAttaaaaacgaacaaacaaGTTACAGTCTGAAACATTTCTGAGGTATGTATTGAGAGGACCTCTACTGCACAGCCAAGGAGCTGAGCCGACCATCAGTTGTCGAATCCTTCAGTGTCCTGACTTCCACTCTGCATTAAGATATTGAAacatgtcattttttgtttttgcttttccttttcctgtctTGTTGCATTCAATCATTCCCCATGAGTCCAGTCAGAAGAAGACTCGTGTGACCTTTGTCCTGCATGGTTAATTAGCATTGTTATAACCGATTGCCTCATCCTGAAATGCACAGGCCAGATTTGTCAAACTGTTTACACTGAAGTGCACCATATTTTCCGAAACTAACCCGAATCTGACTGTTAATATTACGAAGCAAATGATGTGTGAGATGAAGGCTTGCATTTCAAAGAAAGTCCATACCTTGAGACTCCTTtacccaaattaaaaaaatgaaatggtgtAATTTACACTTTGGCACCGAACCCTTGATAAATCTCCTCCATGTCGGTCAGTTCTGTATGTAACCTGCTGCAGTGGATCTCATGTTAAATGTTAGCCGTTCTCCACTTGAAACTCGCTGGGGGTGGGTGGGAtgagaaggggtgggggggcttttGTCTGTGAACTTGTCCGTAGAACACTGACCCTGGAGCAAAACCTGAGGGAAACCCCATCACTGATTTGTATAGCACAGATGTATATAACGCAGTCATTAAAAGCCATCTTGTcatttattcttaaataaaatacgTCC

Function

symbol description
tubgcp3 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Is expressed in ciliary marginal zone; head; and optic cup. Orthologous to human TUBGCP3 (tubulin gamma complex associated protein 3).

NR:

description
PREDICTED: gamma-tubulin complex component 3

GO:

id name namespace
GO:0007020 microtubule nucleation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16570 TUBGCP3, GCP3; gamma-tubulin complex component 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014371 True 4161 mRNA 0.49 22 11540432 11561870

Neighbor

gene id symbol gene type direction distance location
AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding upstream 147027 11392389 ~ 11393405 (+)
AMCG00014369 arhgef7a,LOC107668898,LOC107712280,LOC107569023 coding upstream 319658 11177961 ~ 11220774 (+)
AMCG00014361 NA coding upstream 411072 11125399 ~ 11129360 (+)
AMCG00014363 LOC106582132 coding upstream 434582 11097567 ~ 11105850 (+)
AMCG00014362 NA coding upstream 453830 11061595 ~ 11086602 (+)
AMCG00014373 NA coding downstream 44098 11605968 ~ 11640460 (+)
AMCG00014376 cab39l,LOC103356757 coding downstream 82158 11644028 ~ 11659546 (+)
AMCG00014378 NA coding downstream 106286 11668156 ~ 11678181 (+)
AMCG00014377 NA coding downstream 127363 11689233 ~ 11696926 (+)
AMCG00014381 NA coding downstream 149528 11711398 ~ 11711931 (+)
G69610 NA non-coding upstream 319158 11221070 ~ 11221274 (+)
G69556 NA non-coding upstream 578503 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 702202 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 1047036 10493147 ~ 10493396 (+)
G69457 NA non-coding upstream 1316397 10223671 ~ 10224035 (+)
G69681 NA non-coding downstream 79213 11641083 ~ 11641452 (+)
G69722 NA non-coding downstream 157448 11719318 ~ 11722767 (+)
G69739 NA non-coding downstream 221995 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 1038234 12600104 ~ 12600313 (+)
G69833 NA non-coding downstream 1418389 12980259 ~ 12982434 (+)
AMCG00014345 NA other upstream 1388519 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1531784 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 4057872 7464503 ~ 7482560 (+)
G68848 NA other upstream 4123838 7413640 ~ 7416594 (+)
G68830 NA other upstream 4190965 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 1684439 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 2093368 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 2627694 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 2740577 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 3660044 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000587 tubgcp3 coding NC_007112.7 CM002885.2 46404968 ~ 46452686 (+)