AMCG00014380 (rcbtb1)


Basic Information

Item Value
gene id AMCG00014380
gene name rcbtb1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11697189 ~ 11722453 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014380
ATGCTTCTAAAAAATAAAAGCCTCTTGTCAGTCACTCTGCAGTTGCCAAACGTTGCTATCACACAGACTAAGGATTACCTGAATAAAATGTCCTCCTTCTCAGAAGAGCCCACTTTGCTCGGCCCCGTCACCGTGTACTGCCTGCTGGCCTGCGGCGTGCAGCTCGCAGTGGGCTACGCGCTTGCGCAGCTGTGGGGGCGGAGGTGCTCTGGAGTGGACAGGTGGATCCTAGTCTGGCTGATCTATGATGCCATCGTGCATTTCACCCTGGAGGGTCCTTTTGTGTACCTTTCTCTAGTTGGAACAGTGGCAACCTCAGATAGTATTTTTGCTGAATTATGGAAAGAATATGGAAAGGCTGATGAGAGATGGCTCCATTCAGATCCCACAATCGTATCCCTGGAGTTGCTGACTGTAATTGTAGACGGCTTTCTAGCCCTTGTCTTGGTTTATGCCATCGTCAAGGACAAATACTACAGGCACTTTGTCCAGAtcacactgtgtgtctgtgagctgTATGGTGGATGGATGACCTTCTGCCCTGACTGGCTGGTTGGCAGCCCCAACCTGAACACCAGCAACTGGCTCTACCTCTGGGTGTACCTGGCGTTCTTCAATGGGATCTGGGTCATTGTGCCCGCGATGCTGCTATGGCAATCGTGGGGGGCACTGCGGAGAATGCACCAACCGCTGCTCAGGAAGTCTGAAAGGAAGCTGGGGAGCGCTAGCCTGTTGGAAATGTCCTGGATGGTCAGTGAGTTGGGAAGGTCCTTCTTGTTGGCCAGGACCAGTAAGGGGACCTTGTTCATGTTTTCATCATTCAAGACCTGCTTCAGGGCCTTCTTAGCCTCGTCCAGCCTGGAAGCATCAGCACCGTCCACCACAAACACCAGAATGTCACAATCTTCCAAGAGCTGCAGCAATGAGCACCCCCCTTCCTGGCTGGTGTGTGTGAGGAGTACAGCCATGGTGGATGTGAGCAAGTGGCCTCTGTTCACTCTGCTGTCATCGCAAGAGATCGCTTCAGTCCGGCAGGCTTGCGTCTTCGGCACGTCTGCTAATGAAGCCATATACATCACCCACAATGATGAGgtgtttgtttttgggtTGAATTACAGTAACTGTTTAGGGACAGGTGACAACCAGAGTACCATCGTGCCAAAGAAGCTGGACAGTCTGTGTGGGAAGAAGATTGTCAGTCTGGGCTATGGCAGTGGTCCACATGTGATACTCGCTACTGAAGATGGAGAGATGTACGCGTGGGGGCACAATGGGTATAGTCAAATAGGTAACGGGACTACAAACCAGGGAATCTCTCCCATCCACGTGTCTGCCAATCTGCTCAACAAGAAGGTGACGGAGGTGACCTGTGGCTCCCATCACTCTCTGGCACTTACATCTGAAGGCGAGGTCTATGCATGggggtacaacaactgtggccAAGTTGGATCAGGATCTACCGCCAATCAGCCTACACCTCGCAAAGTGTCCAACtgcctgcaaaacaaaatcGTGGTCAGCATCACCTGTGGTCAGACTTCCTCTATGGCTGTGGTAGACAATGGAGAGGTGTACGGATGGGGCTACAATGGAAATGGCCAGCTGGGTTTGGGCAACAATGGAAACCAGCTGACCCCCTGTCGCCTGGCAGCCCTGCAGGGCGTGTGTGTGCTGCAGATTGCGTCTGGCTATGCACACTCACTCGCACTAACAGATGAGGGGTTGCTGTATGCCTGGGGAGCTAACACCTATGGCCAGCTGGGCACGGGCACTAAGAGTAACCAGCTTAGCCCTTTACAGATTATGACCGACAAGGAGAGCAGGATTGTAGAGGTCGCAGCCTgccactccacacacacatcagcAGCCAAGACGCAGAGCGGCCAGGTGTACATGTGGGGCCAGTGCCGGGGCCAGTCCGTGGTTCTGCCACATCTGACCTACTTCTCCTGCACCGACGATGTGTTCGCCTGCTTCGCCACCCCCCCCGTCATGTGGCGGGTGCTCTCTGTGGAGCACGATGACTTCCTGACAGTCGCACAGTCCTTGAAGAAGGAGTTTGACAGCCCTGAAACGTCAGACCTCAAGTTCAGTGTCGATGGGAAATACATTCATGTCCACAAAGCCGTACTTAAAATAAGgtGTGAACACTTCCGCTCCATGTTCCAGTCTCACTGGAATGAAGATATGAAGGAAGTGATTGAGATTGATCAATTTTCTTACCCTGTGTATCGCTCCTTTCTGGAGTACCTGTACACGGACAATGTGGATCTTCCTCCAGAAGATGCCATTGGGCTCCTGGATCTGGCCACGTCGTACTGTGAGAACCGTCTGAAGAAGCTGTGTCAGCACATTATCAAGAGGGGCATCACTGTGGAGAACGCCTTCTCTCTGCTTTCAGCTGCTGTCAGATACGACGCTGAGGATTTGGAAGAGTTTTGCTTCAAGTTTTGTGTGAACCACTTGACAGAAGTCACTCAGACGACAGCTTTCTGGCAGATCGACGGCGCGCTGCTGAAAGAATTCATTTCCAAAGCCAGTAAATGTGGAGCCTTTAAGAACTGAAATGGACATCTCCTCGGGGTGTCACTGCAAAACAGAAGACCACCCACCTCAGCCAGGGGTCTCGGCCCTCCAGCCAGGCCTCCAGGTGTCCGTTGCTTTGGGCTGACAAGCGGCTGTGTATGAAGTTATCCACAAGGACTTTTTCCAGTGAAGAAATTGTAGCACGATCCCTATATTAAGGGAGGAATCTATATAACGTCAATGAACCACATCGACTCTATATCTTGAACCTTTGTTTTCAGGGAGTATTGTAAGAGAGAGTTTCTTTTCCCtttggatattttatttttttattttttgctataCTATTATACTGTTTAGCAGACATATTAAGGGGTGATTGCACTAACTATAAAATATACTTTCTCTTTATCCTCCCCATTGAATTAAGCCTGTAACGGCGTTCAGTGATGGCCGCCCAGCTTTCCAACACGAGCCGTATTCAGGAGGGCGGCTGTGATCCTTTCTTCATGGCTCAGTGGTTGTCACACTTGCTGGTTCAGCGGGAGGTAAATGCCATCCCTCCAGGGACGGGATCAGTGTGGCTTGTTAGCAGACTGGCAGTGGATGTTGTTAGTAAAGACCCAGTGGTTCAACTACGAGACGTCTGCTGTCACTCGGGCCACCGATTACTTGTCTGCAACGAAAACTCGGCTGAAGACAGCGTTGCCTTTTATGAGTTAAACACAACAGAGCTTCTGCCCCAGCCTGCATACCAATGCCAGCATGTTGACCTAATTCCCAGAAAACTGCACATATCAACAAAGAGGTCTCTGCTGCGGTCAGTGTTTTTTGGGAAAGTGTGTATTATATGGAGACAGCCTGACCGCAGCCCTGGAGCAGGCTGGATTCTGTCTGACTGGATATCGAAGACGTAGGCCACAAGACATGTGATCTGTACTATCTGACGCTCCTTTCTTCTGGTATTTTATCCTCTGAATGTGCTTGTCCTTTAACGAGGGCTTTACAAATCAGCTATAGATTACATGCTCTATTAAATACCGTTGTGATTCTCCCAGATCACAGTACCGGGGACTCACTCTTCACACCTGCTTTGTTATCTGGTCCTTCTATGTTTTGGTAAATTAAGTTTCCAGTCACTGGTCCGATAGTAAACCAGTCTGTACTGAAAGGCAACATGTGAATACACATTACCATGTTTACAGGTCATGCCTCAGAGGTGAGTTTGGTGAAAATAAAAGCCATTGACAAATGTTTCATATAAATTTGGGGAAAGTGAGAACCAAAATGTTTACTATAGCAGTGTGGAAATAAACTTAAGATCACATGTAATTCAGTTATCATTCCTTCACTTTGTGTGTGGATATGAAAGGTATGGTCAAACTGTGCACAGTATTTGATCACCCTTGTGTATGACAACTGGGCCCAAATGTTAATTCGAAGGCATAGAACTCTAAATAATTACTTTccatttttctgaaaatgctCCTAGTCCTGTATAAAATCTCTCACAAATTGGAGTAAATCCAAGGTCCACTGCAGTCCTCTTTTCTGAGAGATTCAGCATATTCCTAAAATTGACAGGAAATCAGATTTTTGCCttgcttctgtgtttttttttctttctagtttGTGTCCCTGAATGAATAGCTTTGTCTGCAATTCATGGATGAATAGGTGTTTAATTGATTATCTGACCAGTTAAGCACACTGTTAATAATATACAGCCTTTCAAATATGCTATATGAGAATCTATTTAGTGTGTATTACTATTGTAGCCAAATAAATGATTGTGAATTGACC

Function

symbol description
rcbtb1 Acts upstream of or within blood vessel development and retina vasculature development in camera-type eye. Orthologous to human RCBTB1 (RCC1 and BTB domain containing protein 1).

NR:

description
PREDICTED: RCC1 and BTB domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K11494 RCBTB; RCC1 and BTB domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014380 True 4329 mRNA 0.48 18 11697189 11722453

Neighbor

gene id symbol gene type direction distance location
AMCG00014372 atp11a,LOC106575518 coding downstream 194588 11459613 ~ 11502601 (-)
AMCG00014367 ankrd10,LOC106586677 coding downstream 521747 11167640 ~ 11175442 (-)
AMCG00014366 NA coding downstream 552364 11139452 ~ 11144825 (-)
AMCG00014368 NA coding downstream 575358 11104978 ~ 11121831 (-)
AMCG00014364 NA coding downstream 600756 11088747 ~ 11096433 (-)
AMCG00014379 spryd7,LOC108430519,LOC107600395,LOC108266652 coding upstream 27738 11750191 ~ 11755461 (-)
AMCG00014385 NA coding upstream 144158 11866611 ~ 11867529 (-)
AMCG00014386 LOC106575503 coding upstream 160042 11882495 ~ 11891473 (-)
AMCG00014384 NA coding upstream 171307 11893760 ~ 11895883 (-)
AMCG00014390 il1rapl1,LOC100693228,LOC101468878,LOC102196907,LOC101172314,LOC107381071 coding upstream 261620 11984073 ~ 12003809 (-)
G69539 NA non-coding downstream 876117 10815771 ~ 10821072 (-)
G69536 NA non-coding downstream 901000 10795883 ~ 10796189 (-)
G69535 NA non-coding downstream 904043 10792919 ~ 10793146 (-)
G69532 NA non-coding downstream 919748 10777051 ~ 10777441 (-)
G69531 NA non-coding downstream 923767 10773183 ~ 10773422 (-)
G69743 NA non-coding upstream 47237 11769690 ~ 11771393 (-)
G69759 NA non-coding upstream 156644 11879097 ~ 11880456 (-)
G69849 NA non-coding upstream 1247800 12970253 ~ 12970555 (-)
G69896 NA non-coding upstream 1362910 13085363 ~ 13086345 (-)
G69950 NA non-coding upstream 1579471 13301924 ~ 13302379 (-)
AMCG00014374 NA other downstream 29652 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 560103 11125029 ~ 11137086 (-)
G69537 NA other downstream 899042 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 1635959 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 1679438 10001134 ~ 10017751 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 1365155 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 4999620 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 5724415 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 5866814 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 6268198 17990651 ~ 18022095 (-)

Expression


Co-expression Network