AMCG00014382


Basic Information

Item Value
gene id AMCG00014382
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11759901 ~ 11761901 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014382
ATGATTGCGTTGCTCTGTGCGTTGCAAGCAGCTGACCCCAGAGTCCTGCCCTGCTCGCACAGCTTCTGTAAAAAGTGTTTAGAGGGCATCCTGGAAGGCAGCAGGAGCCCTGCGTGGAGGCCACCCTTTAAGTGTCCCACCTGCCGCAAAGAAACGTCCCACAATGGGATAAACAGCCTGCAGAGCAACTACGCGCTCAGGGGCATCGTGGAGAAATATAACGCCATCAAACACACCCCCAGAATGGCCCTGTGCAGGACCCACAGCGGCCAACCCCTGAACATCTTTTGCTCCACAGACCTTAAACTCATCTGTGGCTTTTGCGCCACGACAGGGCAGCACAAGGGGCACACGTTTTGCGCCCTGGAAGACGCGTACGAACAGGAGAAGGCGGCTTTCGACGAGCTGTCCCAGAGCATGGAGAGCTGGCGCAGCGCCGACGTGCTGTCCTGCCTGGAGTCCCTGGAGGCGAGCAAGAAAAAAGCCCTGCAGCTCGTCTCCAGAGACTCCCAGAGAGTCACGGAGTATTTCGATAAACTGATCCACACCCTGGAGCAGAAGAAAAACGAAATCCTGTCCGATTTCGAGACCCTGAAGCTGGTGGTGATGCAGACCTTCGACCCCGAGATCAACAAGCTGCGCACCGTGCTGGAGGAGCAGAGGCGGGCGCTGGGCATCGCGGAGACCTTCCGGGACGCGCCGGACCCGCTGTCCTTCCTGCTGCAGATGCAGGAGTTCAGGGAGAAGCTGGGCATCATCCGGGAGACCTCGCTGCCTCCCCGCACTGACATGCACGTCGGCCTGTACACGGCGGAGTTTGACATCAAGAGGTGGGACAGTGTGCAGCTCAAAGATGTAGATAAGCTCGCCGCCCCGCACGAAAACAGCACATTCtcccttaaaaagaaaaggtacCCCCGGGTGGTGGTATGGTTGGCGGGCTTCATATGCGCTGCACTGCTGGCCTTACTCTGCCTGGACCCGGAAAACCTGGCTTGTGTGTCAGGCCACATGTCCACTGTGGTCCATGGCTGCGGGGAGCTGGTGGACTGCGCCTCGGTGTGCTGGAGAGAGGTGgccagggtgtgtgtgttgctgcttGATTTATGTCACAGGAATATATTGATTGTGATGGACGGGACTGTAGACTTTGTTGCCAGTTACAAGTTTTTGTAG

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12003 TRIM13; tripartite motif-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014382 True 1176 mRNA 0.57 2 11759901 11761901

Neighbor

gene id symbol gene type direction distance location
AMCG00014381 NA coding upstream 47970 11711398 ~ 11711931 (+)
AMCG00014377 NA coding upstream 62975 11689233 ~ 11696926 (+)
AMCG00014378 NA coding upstream 81720 11668156 ~ 11678181 (+)
AMCG00014376 cab39l,LOC103356757 coding upstream 100355 11644028 ~ 11659546 (+)
AMCG00014373 NA coding upstream 119441 11605968 ~ 11640460 (+)
AMCG00014375 NA coding downstream 4527 11766428 ~ 11767590 (+)
AMCG00014383 NA coding downstream 108124 11870025 ~ 11877714 (+)
AMCG00014387 NA coding downstream 138621 11900522 ~ 11901421 (+)
AMCG00014388 NA coding downstream 181674 11943575 ~ 11944826 (+)
AMCG00014394 NA coding downstream 1061652 12823553 ~ 12834319 (+)
G69722 NA non-coding upstream 37134 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 118449 11641083 ~ 11641452 (+)
G69610 NA non-coding upstream 538627 11221070 ~ 11221274 (+)
G69556 NA non-coding upstream 797972 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 921671 10837204 ~ 10838230 (+)
G69739 NA non-coding downstream 21964 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 838203 12600104 ~ 12600313 (+)
G69833 NA non-coding downstream 1218358 12980259 ~ 12982434 (+)
G69959 NA non-coding downstream 1572313 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 1590432 13352333 ~ 13380404 (+)
AMCG00014345 NA other upstream 1607988 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1751253 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 4277341 7464503 ~ 7482560 (+)
G68848 NA other upstream 4343307 7413640 ~ 7416594 (+)
G68830 NA other upstream 4410434 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 1484408 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 1893337 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 2427663 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 2540546 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 3460013 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location