AMCG00014393


Basic Information

Item Value
gene id AMCG00014393
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12834950 ~ 12841128 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014393
TGTGATTGCAGTTAATGAGTAACAGACCTCTGGTTTCAAAGGTTTGACAATGCTGGAGAGGCAGCAGGACACGCTAAGCAGACGTTGTGACCGGCTACTTCAGACGAGGTTTTAAAAAGGGGTGCAGTTTTTCTTCAGGTGTAGGGgaatatgttgaaaaacaagGTCAATGCGGGAGGCCCCTTTGCGAGGCGCCCTGACAACACGGCTTTCAAGCAGCAGAAGCTTCCTGCCTGGTCCCCCTCCCTCACTGCCCAGACGGTCCTGCCGTTCTTCTACCTGATCGGTCTGCTGTGTGTTCTCATGGGCATCTGGCTTTACCTCACTGTCACTGCAACCCAAGAGATGAAGATTGACTACACAGATATAGATAACTGCTCTGCCTGCTATGAGCTGCGCAAAGATAGCCATAACTCAACCAAGGAATGTCAGTGCACTGTCCATTTTACTCTCACCGAAGGATTCAAAgGGGATGTATTTATCTACTACGGGCTAATAAACTTCCACCAGAACCTGCGGAGATACATGGACTCTAGGAGTGATGCACAGCTTGTGGGTAGGAAAAGTCAACTTAAAACGACACAAGATACTTGTGCACCCTTTGACAAAACCAGTGATAACATTCCTATTGCACCCTGTGGGGCTATTGCCAACAGCATCTTCAATGATTCCTTTGAGGTTTTCTTTCACCCAGCTGGGGGTATGGAAATGGCTGTGTCTGTCTCAAAGACGGATCTTACGTGGTACACTGACAAAAATGTGAAGTTTAAGAACCCAGGGCCAACCAATGAAACTCTGTCGGAAATCTTTTCAGGAACGGCTCAGCCAATTTACTGGCGGAAACCTGTTTATATGCTGGATCCATATGAAAGAAGTAACAATGGTTTTGTGAATGAAGATTTCATTGTTTGGATGAGAGAGGCAGCATTTCCAAATTTCAAGAAACTCTATGGTAGATTGAATCACACCCCAGAGTTTAGTAATGGACTCCCACCTGGGAACTACAGCATCCAGATTTCATACAATTTTCCTGTGCAATATTTTCAAGGGAAAAAGCTGGTGATCCTTTCAACAGTGTCCTGGTTTGGGGGCCATAACATGTTCCTGCCAATTGCCTACATTGTGTCTGGAGGTATTATCATCATTGCTGCCATGATCTTAactggcttttattttaaagtgggaAAACATAATTTGGATTTGGAAGATTAAACCTGAGTTGCGTTTTATGAACTGCTTGAGCCAACACTATGCATTTGTGTCTAatgatataatacatataaactaTCTTAATTTCACATAAGCCCATcaaagagatttgtttttcaggaagTGCATTTATGCAAAGGAATGATAACCCACaccaaaatatacattgtttcGCCCATTGTCATATAGTGACTTTACTAtccaaaaatgtttgtgttgctgttgttgttttaatttatatttgtattgcaaagTATCCTCTGATGAATGACAAATAACCACTATTCCCTTAATTAGAACTTCTAGCTtctaatattttgtaaacatttgtataaaagCTGTGATTCTCTAtgatcttaatttaatttcactttatgttttaaatgtttatgattTTGGTGTGATTTCTGTGATTTTACATTATGAGATTAATAGTGTTCTACTTttgatagattttattttattctgaaaatgtaatgtgatactatatttttactttaacttGATATAGAGAAATAACAACGAAATAAAGATTGTTTTGTACACTTTGGGAAGTGTTTTGTGAGTATATTAACATACCCACGTTGGCTTTTATATTTTTGGAGAACAATACACTATTACGTTATGTAAATTATGCAGCTGTCAGTGTGTGAGCATTACAGTTGGAAGGAATACATACTCAACGGCTGTAACTTGAGCTTAATTAAATCCTAATAAGGAACAGGAGTTGTTAATGTCAATGTTTACGGTTTCATATTCACATGTATCAAATTTATTGGTCTATTGCATGATATCAGAAAAgaccatttctttatttatattgtattgtctGTTTCCTATTCTTTCACATtgtattagaaaaataactttGTGGTTCATAAATGTTTTACTAATGTGTTatgcaccgatcagccataacattatgaccacctgcctaatattgtgtaggt

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014393 True 2159 mRNA 0.38 7 12834950 12841128

Neighbor

gene id symbol gene type direction distance location
AMCG00014394 NA coding upstream 631 12823553 ~ 12834319 (+)
AMCG00014388 NA coding upstream 890124 11943575 ~ 11944826 (+)
AMCG00014387 NA coding upstream 933529 11900522 ~ 11901421 (+)
AMCG00014383 NA coding upstream 957236 11870025 ~ 11877714 (+)
AMCG00014375 NA coding upstream 1067360 11766428 ~ 11767590 (+)
AMCG00014392 NA coding downstream 1662 12842790 ~ 12849371 (+)
AMCG00014402 NA coding downstream 129130 12970258 ~ 12978095 (+)
AMCG00014404 NA coding downstream 137037 12978165 ~ 12978428 (+)
AMCG00014403 NA coding downstream 137343 12978471 ~ 12979109 (+)
AMCG00014399 jagn1,jgn1a,LOC106574769,LOC105027989 coding downstream 168577 13009705 ~ 13015654 (+)
G69778 NA non-coding upstream 234637 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1050867 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1112183 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1193498 11641083 ~ 11641452 (+)
G69610 NA non-coding upstream 1613676 11221070 ~ 11221274 (+)
G69833 NA non-coding downstream 139131 12980259 ~ 12982434 (+)
G69959 NA non-coding downstream 493086 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 511205 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 853687 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 1326318 14167446 ~ 14171012 (+)
AMCG00014345 NA other upstream 2683037 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 2826302 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5352390 7464503 ~ 7482560 (+)
G68848 NA other upstream 5418356 7413640 ~ 7416594 (+)
G68830 NA other upstream 5485483 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 405181 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 814110 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 1348436 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 1461319 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 2380786 15221914 ~ 15242333 (+)

Expression


Co-expression Network