AMCG00014423 (pou2f1b,LOC107748141)


Basic Information

Item Value
gene id AMCG00014423
gene name pou2f1b,LOC107748141
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13655238 ~ 13689188 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014423
atggcGGACGGAGGAGCAGCGAGTCAAGATGAGAGTTCAGGACCAGAATCAAGAATGAGTAATCCGTCAGAAACCAATAAACCTTCAATGGAGAGTGGGGATAGCAGCACAGGTGCCCAAACAAATGGACTCGACTTTCAGAGGCAGTCTGTGCAAACCAGTGCAATCACAAATGCACATGCACAGGCCTTACTTCACCAGGTCCATCTTGCTGGAGCAAGTTTACAGGCTGCTTCTCAGACAGTAAATTTACAGTCTAAAACAGAAGAATCTGGTGATTCTCAAGTCTCAAGCCAGCCCTCAGTACAAGGGGTGCTTCCACAGACTCAGCTCATGTTGGCTGGAGGACAGATCACTGGATTGACTCTGACGCCAGCACAGCAGCAGTTGTTAATTCAACAAGCACAGGCTCAGCTGCTGGCAGCAGCAGTGCAGCACTCGGCCAACCAGCAGCATAACACCACTGGGGCTACAATCTCTGCGTCCGCAGCAACTCCAATCACACAAATCCCGATTTCACAGCCCATCCAAATAACGCCTgatttgcagcagctgcagcagttACAACAGCAAAACCTGAACCTACAGCAGTTCGTGCTAGTGCAGCCCGGCCACCCGATCGCAACCCAGCTGCAGCCGGCGCAGTTCATTATATCACAGACGACGCAGGGACAGTCGGGTCTCCTGCAAGCTCAAAATCTTTTAACTCAACTACCTCAACAAAGCCAAGCCAACCTCCTGCAGACACAGCCAAGCATCACCCTCACTACACAGGGTGATGTTGGGCTTGCTATGGGAAAACTGTATGGAAATGATTTCAGCCAAACAACAATTTCTCGCTTTGAAGCCTTGAATCTcagctttaaaaacatgtgCAAGCTTAAACCATTGCTCGAAAAGTGGCTAAACGATGCAGAGAATTTGACTTCTGACCAAGCTTTGTCCAGCCCAAGTGCCCTGAATTCCCCTGGACTGGGAATAGAGGGGCTGAATCGCAGGAGGAAGAAACGCACCAGCATTGAGACCAACATTAGAGTGGCCTTAGAAAAGAGCTTTCTGGAGAACCAAAAACCTACCTCTGAGGAGATCACAATGATAGCTGACCAGCTGAACATGGAGAAGGAGGTAATCCGAGTCTGGTTCTGTAATCGACGGCAGAAGGAGAAGAGGATCAACCCACCTAGCAGTGGCAGTTCGAGCAGCACTCCTATCAAAGCAATCTTCCCCACATCCACCCCAATGGTGCCGAGCACTGCTAGCCTTGTGACCAGTAATACACCGACTACATTGACTGTAAACCCAGTTCTGCCTATAACAAGCACCGCTGTAACTAACCTTGGCTTCACAGGCACAACGGGCATCGGGGCAGCCACCACAAACACTGCATCGGTCATCTCGACCACTCCTGTAGCTTCCTCCGTGACCTCGCCTTCACTGAGCCCTTCCCCCACATTACACACCTCTGTCACAGAGTCCCCGAGCACGCAGGAGACCAGCACCACCACGCAGACACCCTGCTCCCTGGCCTCCTCTCTGAGCACCGGCCAGGTGATGGTCACAGCGTCAGGACTGTCGGCGGCACTGCAAGGGGCGACGCAGCTCCCTACCAACGCAGGACTTGCAGCGATGGCCGCAGCAGCTGGTCTCAATCCTGGTCTTATGGCATCCTCTCAGTTCGCGCCGGGTGGTGCCTTACTTAGCCTCAATCCAGGAACCCTCGGCAGTGCTTTAAGTCCAGCTTTGATGAGTAACAGCACTCTGGCAACTATTCAAGCTCTTGCATCTAGTGGGACTCTTCCAATAACCTCTCTGGATGCCAGTGGAAACCTGTTGTTTGCGAACGCCGGTGCCGGCCCGCTGTTCCTCAACCCCCAGAACCTCTCGCTGCTCACCAGCAACCCGGTCAGCCTGGTGTCTGCCGCGGCGGCCTCCGCAGGGGCCTCGGCTCAGGCGCTCAATCTCCAGGTCACTTCCGCAGCTGCCGAGTCCAACCAGAACGCGGTCACCTCCGCTGCGGCAGCCACCATCACTACTGCCTCCAAGGCTCAATGA
>TU87516
cagctgcagcagttACAACAGCAAAACCTGAACCTACAGCAGTTCGTGCTAGTGCAGCCCGGCCACCCGATCGCAACCCAGCTGCAGCCGGCGCAGTTCATTATATCACAGACGACGCAGGGACAGTCGGGTCTCCTGCAAGCTCAAAATCTTTTAACTCAACTACCTCAACAAAGCCAAGCCAACCTCCTGCAGACACAGCCAAGCATCACCCTCACTACACAGCCAGCGACGCCGACACGCACAATAGCGGCGACCCCCATTCAGCCACTTCCACAGAGCCAGACGACACCAAAGCGAATGGACACTCCCAGCCTGGAGGAGCCCAGTGATCTGGAGGAGTTGGAGCAGTTTGCTAAGACTTTCAAACAGAGGAGAATCAAGCTGGGATTCACTCAGGGTGATGTTGGGCTTGCTATGGGAAAACTGTATGGAAATGATTTCAGCCAAACAACAATTTCTCGCTTTGAAGCCTTGAATCTcagctttaaaaac

Function

symbol description
pou2f1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human POU2F1 (POU class 2 homeobox 1).

NR:

description
POU domain, class 2, transcription factor 1 isoform X7

GO: NA

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014423 True 2052 mRNA 0.54 15 13655238 13689188
TU87516 False 495 lncRNA 0.52 4 13683043 13684492

Neighbor

gene id symbol gene type direction distance location
AMCG00014421 NA coding upstream 5164 13630667 ~ 13650074 (+)
AMCG00014422 NA coding upstream 40220 13590920 ~ 13615018 (+)
AMCG00014420 NA coding upstream 204019 13450098 ~ 13451219 (+)
AMCG00014418 NA coding upstream 283862 13361748 ~ 13371376 (+)
AMCG00014419 NA coding upstream 295218 13340187 ~ 13360020 (+)
AMCG00014424 NA coding downstream 54933 13744121 ~ 13747498 (+)
AMCG00014426 NA coding downstream 60485 13749673 ~ 13788076 (+)
AMCG00014425 cul4a,LOC102780633 coding downstream 101961 13791149 ~ 13813879 (+)
AMCG00014427 NA coding downstream 131168 13820356 ~ 13827551 (+)
AMCG00014439 LOC107748345,LOC107577958 coding downstream 193531 13882719 ~ 13903655 (+)
G69961 NA non-coding upstream 274834 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 320053 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 672804 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 1054925 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1871155 11783865 ~ 11784083 (+)
G70054 NA non-coding downstream 5627 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 478258 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 777516 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1490657 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1661454 15350642 ~ 15430852 (+)
AMCG00014407 LOC107725344 other upstream 403506 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3503325 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3646590 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6172678 7464503 ~ 7482560 (+)
G68848 NA other upstream 6238644 7413640 ~ 7416594 (+)
AMCG00014456 NA other downstream 500376 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 613259 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1532726 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1986443 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 2440291 16129479 ~ 16139032 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03276572_03283625 POU2F1B, POU2F1 coding CI01000009 null 3276572 ~ 3284006 (+)