AMCG00014427


Basic Information

Item Value
gene id AMCG00014427
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13820356 ~ 13827551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014427
ATGGCGATCTCGAAAAGCTTCTACTTCATTAGAGGCTGTCTGAGTCCTGTCCTGGCCGTAACTCTGGAGGTGAAAGATGGGAACGACACCTGTATCAAAGCTGAGCTCTTGGCCAACCTGTCGGTCCTGTACAGTGTCGGCAACGGCACGAGAATGGCACTCATGAATCTGCCTGACTCTGCCGAGGTTGGTAAAGGCAGCACCTGTGGCAGCTCTTCTGTGGCCCCCATGCTGGTAGCCACCTTTGGAAATGGTCATTCTCTCAGCCTGAATTTCACTAAGAGTATGACTCTGTACCGTGTGGACACACTAACTGTTGCCTACAACCTCAATGACAGCACTTTCTTCCCTGACTCCAAAAGCACAGGCAAATGTTTCAGTGCATCTCCAGTGGCCATGCCCAAGGTCAATGTGACATTCACTGAAATGAGGATGGAGGCATACATGCAAAGTGCTAACCTCAGCAAAGAAGAAACCATTTGCACTGCAGATGCCAGCGCTACCACTCCAGCTCCCAAAACCACGCCAGCCACCACCACCGCAGCACCCACCACATCTCCAGGCACCCCTGTGCAAGGAAACTACAATGTCACTGGCTCAAACGGCACCTGTCTGCTGGCTAAGATGGGCCTGCAGCTGAATCTCACCTACACCTCCACTGCACAGGGCAAGCTTGTGCAGGAGATCCTCAATGTCCAGCCCGGGCTGGTCAGGGCCTCTGGGTCTTGCGGTTCCACAGTGGCCACACTGTCACTGACTGATGAACTTCACTTCAACCTGAACTTCACCTTTAATCTGAATTCAACAACCAAGAAATACCACCTCGGTAGCATCAGTTTTGATGCCAACATGACAGACGTGACTGCGGAGGAGTGCCAGCTGGACGAGGACAACATGCTGATCCCGATCATCGTGGGCGCTGCCCTGGCTGGACTGGTGCTCATCGTACTGATCGCGTATCTGATCGGGAGGAAGAGGAGTCACGCCGGGTACCAAACCATCTAATGGAATCGCACAATGACGATGGAGATAAAGGATGATCAACCACTGTTACTAATGAAGCTCTCGCAAGGACTCGGTACCACCccttttaattcattaaatcaATACGTTGTAAGGGAGCTTTTTAGTTGGCCTATGCATCTGCTTCTTGACAAGCTCCTCTGCTCTTACAAATGTACCCGAAAGATtgctatatttattaataagaCGGGGGCTTCCTTCTGGATTGGCCATACTCAAGAATTCAAGGGAAACACATGGGCATTCTGGCATGAAGAACACCACGTCACTCAACAGCACTACATTAGACGTGTTCAAAATTCCCACACTAGGTGCCGATACACCTGACCAGGCTTGGTTTAATATATGGTAATACTGCACATGCTCATGAACCCGTAACACGTCTAAATTAatcatgtgaaaatgtaacaacAGACGGGTGGCTGATGTTATATAAATGTCATCGATTTTCTTACTTAATAAGAGAAGTTTATTTAGTCTGGGGGGGAAAACTCCCTTATCTTTAAGTTGTACATTTGTGCAAGAGCTCTagactttgaaatgcatttgctaCAGGAAGAAGGTGAGCAATGTTTATATAAACACCTTGGCAACTGTCATGTGTGGAGAAAATGCCCTTTTAATGCCCTGTGAACTTGCTAGGTACCGCTCTCTTGCTGTGTTCATGTAATTATGATTTCCTTTCCATTTACCAGTTTGGATTTCTTTTCCCCTCACTcccactttttgtttttaattcattaaggATTTAGGTTTTGCTTTTTGGATGTGGTGTACAGTATAATTCTCATCAGGCCTTTTGGTTCTGTTGGGTTTGTTGAACAATTGTTTTGACCTTGTGCAGGCATTGGCTCTACCAATGatgatcttttttttctttttctgtaaatgtattgctCTTGTCTTTCAATTGGTATTAAGAAATTATAATGCTTTTTTGTTAACAACCAAGGGGCTCAAAGGCTCCTTAAAAGGGAATTCTTGAATGTCTAACCTGGCTTTAACAATACTTGCAATGTTGGCTATTGTCCACCCCCCCACACTTCATTTGCATTTGGGGCAGTATTATAAAGGTTGGTCTTTGTTAATCTGATAGTTACACAATAATCAATTCTGTGTCTTGGATTGGTAAGATCTGGTCAAATACCACAAAATGATGCCTTTCATTACAGGTGAGGTTTTAGTTCAAATGTCAACCTCTTGGAAAGCTGCATGCTTTTCTTCCGCTGTGGATACTGAAGGAAAGTGTTAATTGTGCCTCTCAGCAGTGGTTTATAATTGAGATTTCACGACACAGCTCCCTATTGAAAGACGCTGCAGGATTGTAAGTCATAGCTTTGTTTTAGCCTTCAGTTTGTTCAAGTTATTTGATTTAGATATTAATGCCTGCAAGCTGATGCTGTTCATTATCCTGCAACTTTCAGTGCCTCTGAAGGTGCTTGTGGCTCCAACTACCATTGGGTTGCAATTCAGAGTTCTTAGTCGtgcccttttatttttttttttaatggagcaaatgtttaatatgatCAAAATCAATTTGGAGTTTTAAGATTCCCTAACTTAACATGACGTGTGtgatacagaaaatgtatggGGAGGGGAGGTATTACAAACAAGGATGTGAAATATCACTCTCACTAATCCCTGAAGTATATTAATAACTGTATTCCATTCTagtgaatttttatttttgtagggaATGCTTCGATCTTTTTCTATTTGCATCTCAGTGAGGTCAATAAAGATGAATGACAAAGTA

Function

GO: NA

KEGG:

id description
K06528 LAMP1_2, CD107; lysosomal-associated membrane protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014427 True 2785 mRNA 0.43 8 13820356 13827551

Neighbor

gene id symbol gene type direction distance location
AMCG00014425 cul4a,LOC102780633 coding upstream 6477 13791149 ~ 13813879 (+)
AMCG00014426 NA coding upstream 32280 13749673 ~ 13788076 (+)
AMCG00014424 NA coding upstream 72858 13744121 ~ 13747498 (+)
AMCG00014421 NA coding upstream 170282 13630667 ~ 13650074 (+)
AMCG00014422 NA coding upstream 205338 13590920 ~ 13615018 (+)
AMCG00014439 LOC107748345,LOC107577958 coding downstream 55168 13882719 ~ 13903655 (+)
AMCG00014440 tfdp1,LOC108266453,LOC108426071,LOC107597491,LOC107748134,LOC107673714 coding downstream 78298 13905849 ~ 13921330 (+)
AMCG00014441 grk1,grk1a,LOC107748333 coding downstream 103331 13930882 ~ 13939105 (+)
AMCG00014442 NA coding downstream 117229 13944780 ~ 13965123 (+)
AMCG00014444 tpp2,LOC107665822 coding downstream 257961 14085512 ~ 14105494 (+)
G70054 NA non-coding upstream 123485 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 439952 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 485171 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 837922 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 1220043 12600104 ~ 12600313 (+)
G70221 NA non-coding downstream 339895 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 639153 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1352294 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1523091 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 1623227 15450778 ~ 15451268 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 131168 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 568624 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3668443 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3811708 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6337796 7464503 ~ 7482560 (+)
AMCG00014456 NA other downstream 362013 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 474896 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1394363 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1848080 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 2301928 16129479 ~ 16139032 (+)

Expression


Co-expression Network