AMCG00014429


Basic Information

Item Value
gene id AMCG00014429
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13697335 ~ 13709287 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014429
ATGCAGGGAGATAAGAGCTCAGGGAAAAAGGCCTCCATCTCGGGACTGACTGACCCCAAGCTGTGCTACATTCTGGACGGCATCCTTCTCATTTATGGAATCATTATCACAGCTCTTTACTTCAAAGACAAGGATCTGGACAAGAGTCGAGACCAGTATGACCAGCTGAGGAGAGGCCATGATGCTGAGAGTGGAGGGGCAAGACCAAATCGCAGACAGGCTGATGACGTGTACACAcCTCTGCAAAAGCCCACCACCGATTCATATGATCAAATTgcagtgaaacaaaacagagagCGTCGTAGAAATAAGGAACAAGTTTACCAGGGTCTCAGTGCAGCAACAAAGGACACTTATGACTCTTTGAACATGCAGCCCCTGCCTCCACGCTAAGACAAGGGACTCTTGTAACAtatttctgtcctgttttttgCAGAGTTGCATGTCGTTTTTCAAATGCTACAGCCCCTTCTCCAGTGTTTCtgttaaataaaggaaaatatacgATCGTGTTCAATATTATTGGGAAACTTTTTAGCCCTACAATACTGATCTGCCCAATAATTCTGAACACTTCTCTCTCTTTGCGTGGGGAAATGTGGGATGTTTGGCTTTAGCTtttctttacacacacattaaacataaatcaatatCGACTCGAATTTAAACCTTGAAACAGTGTTTCTAGGCTTCAGGTATCATATTCCTCCgatcatgattttattttccaggatAGCCTTCTGTTATTAGTTACAGGATAGTTCAGTCTGTTAAAATATACACCATAATTAATCATCCATGTGCTCACATGCGTTTGGTAAATGAAGGATATCTTAAAAATCTTACAAATCTTAAGTACCGAAGCTTTAATTAGATATTTAGTTTCTGAATCCAGATGAATTCCAGTGAAATTAAACTGGTTTAATGAACAGAGAAATGTTGGATTTATCAAGCGTTACATTAAACGGAAAAGGATGTTGCTGTAATGCGCTATACTAAATAACGAAGAAAACGTTATTTAACACAGGACTATAgattatacttttatataattTCCCAGATTGACTTGATTTAGTCGGTGTATTCAAGAGGGTACAGAATTTAGCTTTAAAAGAAAGTGGGAATTGACCTGTTTGTTTCCCTAAGATTAACCATAGAGTACGTCACCACACAGGGCTCATTCTAATGTGTGGTTTCAAACATGTGGGAGATCATCTATGtaggaaatattttgtttccccctccTCTTACCTCGACACACAAAGATCAGTTTATATCAGTTACTGCCCACATTGATAGTCCAAAGCTATGCTATGGACACATACAATATAGTCATGTCaatctttagtttttttgtttgtacagaAGATTGAGTGTAAACCTGCATTTTCTGCAACTTTAAGTTATGCTGCACCAGGGAGGTAGATttatatagatatctatatatacacacacacaaatacatagaaagtgcatgtatataatgtttttatttttatgtgctgTATAATTAATAACTACTACTAATTCCATTAAGCACAATTTGCATTCATCCTTTACAATGGTGTTTGGAACAGAGCCACAAAGTTGAAGATCTTATTTGAATTGCATAGCAGCAAAGGGAAGTAGCATCCCAAAGGATTACAGTTTCTGACGAGACTAAGATGCTGGGCAAATGGAATAGATAACTTCCAGGAACTATTACAAAGAAATGATAGATTTCACCATTATTTGAGGTGTTAGACTTGCCTTCCTCAGCTGTGGAAGCCAATCGCATTAGTTGTCGTTGTGGTACTGCAGGATATGCCTGCACACTGCTGGTGCTTAGACCTAAGGGAGATTTAAACATTACGACATTTTTAGGAACGCAGCATGCAAATGTAAACTTGCTTTAGGGTATtaaggagaaaatgaaaatgcattgtttttgtaatttctaaaaaataatttatcatGATATGATGTAgatgtttattatgtaaatagcTCAGATGGTGTGGAAAGATCATAAATAAAGTGCCT

Function

GO: NA

KEGG:

id description
K06453 CD3Z, CD247; CD3Z antigen, zeta polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014429 True 2022 mRNA 0.37 7 13697335 13709287

Neighbor

gene id symbol gene type direction distance location
AMCG00014430 NA coding downstream 160966 13531195 ~ 13536369 (-)
AMCG00014438 NA coding downstream 169733 13498726 ~ 13527602 (-)
AMCG00014432 NA coding downstream 209722 13478348 ~ 13487613 (-)
AMCG00014434 LOC106575972 coding downstream 224164 13443270 ~ 13473171 (-)
AMCG00014437 me3,LOC108426042,LOC107748144,LOC107595810,LOC107756775,LOC107695468 coding downstream 288759 13377662 ~ 13408576 (-)
AMCG00014428 NA coding upstream 19416 13728703 ~ 13742819 (-)
AMCG00014436 pcid2 coding upstream 75628 13784915 ~ 13790135 (-)
AMCG00014435 NA coding upstream 119168 13828455 ~ 13846485 (-)
AMCG00014431 adprhl1 coding upstream 143875 13853162 ~ 13864850 (-)
AMCG00014433 dcnl2,dcun1d2,dcun1d2a,LOC105908025,LOC108426072 coding upstream 157356 13866643 ~ 13882123 (-)
G70063 NA non-coding downstream 364 13694757 ~ 13696971 (-)
G70034 NA non-coding downstream 73954 13623115 ~ 13623381 (-)
G69973 NA non-coding downstream 321456 13304426 ~ 13375879 (-)
G69950 NA non-coding downstream 394956 13301924 ~ 13302379 (-)
G69896 NA non-coding downstream 610990 13085363 ~ 13086345 (-)
G70091 NA non-coding upstream 49939 13759226 ~ 13761420 (-)
G70094 NA non-coding upstream 60890 13770177 ~ 13772272 (-)
G70169 NA non-coding upstream 210234 13919521 ~ 13921330 (-)
G70238 NA non-coding upstream 390077 14099364 ~ 14102156 (-)
G70315 NA non-coding upstream 1336565 15045852 ~ 15059774 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 563584 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 2029798 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2560249 11125029 ~ 11137086 (-)
G69537 NA other downstream 2899188 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3636105 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3012786 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 3737581 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 3879980 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4281364 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5492516 19201803 ~ 19203567 (-)

Expression


Co-expression Network