AMCG00014436 (pcid2)


Basic Information

Item Value
gene id AMCG00014436
gene name pcid2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13784915 ~ 13790135 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014436
agattATACACAACGGAGCAGCACCGGACTAAGACAGTTACTTGAAAATCTCCCATGTCTTAAATGGCACACATTACAATAAATCAGTATCTCCAACAGGTACTTGAAGCCATTGACACTAGAGATGGAGTGTTCTGTGCTGAACTATTGTCATTTAAACACCCACATGTGGCCAACCCCAGACTGCAGCTCCCCAGCCCAGAGGAGAAATGCCAGCAAGTCCTGGAACCCCCTTATGATGAAATGGTCGCTGCACATTTAAGGTGTACATACGCTGCGGCAAATCATGACTTCGTAGAAGCATACAAGTGCCAAACAGTCGTGGTTCAatcatTCTTAAAAGCATTCCAGGCCCACAAAGAAGAAAACTGggCTTTGCATATGATGTATGCAGTTGCCTTAGATCTTCGAATCTTTGCTAATAATGCTGAGCAGCAGCTGTCTAAGAAAGGAAAAGGGAAGGTGGGAGACATGCTGGAGAAAGCGGCCGAGCAACTGATGAGCTGCTTCCGCATCTGTGCAAGCGACAATCGAGCTGGCATTGACGACTCTAAAAAATGGGGAATGTTATTTCTCATCAACCAGCTTTTCAAGATTTATTTCAAGatcaacaagctgcaTTTGTGCAAGCCGCTGATCAGGGCCATTGACAGCTCCAACCTGAAAGATGACTACACCATCGCCCAGAGAGTCACCTACAAGTACTACGTGGGGAGGAAAGCCATGTTTGACAGTGATTTCAAACAAGCGGAAGAGTACCTGTCGTTTGCCTTTCAACACTGTCACAGATCCTGCCAGAAGAACAAGCGCATGATTCTCATTTACCTCCTTCCTGTCAAAATGCTCTTGGGTCACATGCCAACAAATCAGCTCCTCAGGAAATATGACCTGCTGCAGTTTGTGGATGTCACCAAGGCTGTGAGTGAAGGGAATCTTCTGCTCCTGAATGAAGCTCTGGCCAAGCACGAGACGTTCTTCATCCGTTGCGGCATCTTCCTCATCCTtgagaaactgaaaatcatCACTTACAGGAACCTCTTCAAGAAAGTGTATCAGCTGCTTAAAACTCACCAGCTGCCTCTGGATGCTTTCTTAGTGGCACTGATGTTCATGCAAGTGGATGATGTGGACATTGATGAAGTCCAGTGCATTTTAGCTAACTTGATCTACATGGGTCATATCAAGGGCTACATCTCTCACCAACATCAGAAACTGGTGGTCAGTAAACAGAACCCCTTCCCCCCCCTCTCCACTGTATCCTAACTACACacaccaggagagagagaaaggattgggttgggttt

Function

symbol description
pcid2 Predicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to be part of transcription export complex 2. Orthologous to human PCID2 (PCI domain containing 2).

NR:

description
PREDICTED: PCI domain-containing protein 2

GO: NA

KEGG:

id description
K23801 PCID2, THP1; nuclear mRNA export protein PCID2/THP1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014436 True 1304 mRNA 0.46 14 13784915 13790135

Neighbor

gene id symbol gene type direction distance location
AMCG00014428 NA coding downstream 42096 13728703 ~ 13742819 (-)
AMCG00014429 NA coding downstream 75628 13697335 ~ 13709287 (-)
AMCG00014430 NA coding downstream 248546 13531195 ~ 13536369 (-)
AMCG00014438 NA coding downstream 257313 13498726 ~ 13527602 (-)
AMCG00014432 NA coding downstream 297302 13478348 ~ 13487613 (-)
AMCG00014435 NA coding upstream 38320 13828455 ~ 13846485 (-)
AMCG00014431 adprhl1 coding upstream 63027 13853162 ~ 13864850 (-)
AMCG00014433 dcnl2,dcun1d2,dcun1d2a,LOC105908025,LOC108426072 coding upstream 76508 13866643 ~ 13882123 (-)
AMCG00014450 NA coding upstream 133464 13923599 ~ 13929423 (-)
AMCG00014452 NA coding upstream 175482 13965617 ~ 14002734 (-)
G70094 NA non-coding downstream 12643 13770177 ~ 13772272 (-)
G70091 NA non-coding downstream 23495 13759226 ~ 13761420 (-)
G70063 NA non-coding downstream 87944 13694757 ~ 13696971 (-)
G70034 NA non-coding downstream 161534 13623115 ~ 13623381 (-)
G69973 NA non-coding downstream 409036 13304426 ~ 13375879 (-)
G70169 NA non-coding upstream 129386 13919521 ~ 13921330 (-)
G70238 NA non-coding upstream 309229 14099364 ~ 14102156 (-)
G70315 NA non-coding upstream 1255717 15045852 ~ 15059774 (-)
G70346 NA non-coding upstream 1448668 15238803 ~ 15242333 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding upstream 1584103 15374238 ~ 15376774 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 651164 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 2117378 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2647829 11125029 ~ 11137086 (-)
G69537 NA other downstream 2986768 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3723685 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 2931938 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 3656733 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 3799132 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4200516 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5411668 19201803 ~ 19203567 (-)

Expression


Co-expression Network