AMCG00014439 (LOC107748345,LOC107577958)


Basic Information

Item Value
gene id AMCG00014439
gene name LOC107748345,LOC107577958
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13882719 ~ 13903655 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014439
GCAAAGTTGTGTGTTGTCATGTTCAGTAACACCTGAGTCTGAGCTCCGCTTAATGGCAGCGCTTGTCTGCATGAAAAAGCAGTGAAGATGTAGTCTAGTCTACATCGGTCTACTCTAGATCAGTCTCCCAGTTGACCGCACTGTGAGCACGGTCGGGAGACGTggtggaggaagaagaggaagaggaggaggcaaCATTTGAGGATGACGGCAACATATATTGCCCTATTTGGGCTTCTTCTGACCATGCAAGCAGCAAGCACTGACCACAAGGAATTGGTCAAGCACACCATCAAGCTGCACCGCGGGAAAGGGGCACCAGTGACGCAGGGTCAGAAGTGGTTTATGGAGAACTGCCGGCGCCTGTCGGGGCTGATGAAGCAGAAGAGTGTGGTGATGAAGAAGCTGGGGGTGGCCATTGCAGCAGTGGAGCGCGACATGTCACTGTCCGACCCCGAGAAGCTCTTCCAGGTGCACACCTTTGAGATCTTCCAGAAAGAGCTGAACGAGAGCGAGAACTCCATCTTCCAGGCCATCCATGGCTTTAAGAGGGCTCTGCAGGGAGACTACAAGGATGTAGTCAACATGAAGGAGAGTAGCCACCAGAGGCTGGAGGCTCTCAGAGAGGCAGCCATCAAGGAGGAGCAGGAGTATGTGGAGCTGCTGGCAGCAGAGAAGCACCAGGTTGCGGCCTTGAAAAGCATGCAGCAACAGAACAAGAGCTTGTCCATCCTGGACGAGATCCTGGAGGACGTCAGGAAGGCAGCAGACCGACTTGAGGAGGAGATTGAGGACCATGTCTTCGACTACAACAAACTGaTGAAGGTGAGTGATATCAATGACTCAGATGAAGGGGTTAAGTTGGCGAAGGAGatgaagggtgtgaatgTGGAGGCGGTACTGCGagtggaggaggatgaggaggacaGCCAGAGGAACATGTCTAAGAGGGAGGTAGAGGACAGCCTTGGTCTGAGCATGCTTATCGACTCTCAGAACAACCAGTACATCCTGACCAAGCCCCGGGACTCCACCATGCCTCGGGCTGACCACCACTTCATCAAGGATATTGTGACTGTTGTGATGCTGTCTCTGCCCTGTGGATGGCTCTGTACCTTGATAGGTCTTCCCACGATGTTCGGCTATATAGTATGTGGCGTTCTTCTGGGCCCATCGGGGCTCAACAGCATTAAGGTGGAAACACTAGGGGAATTTGGAGTCTTCTTCACCCTGTTTGTGGTGGGATTGGAGTTCTCCCCGGAGAGACTGCGCAAGGTTTGGAAGATTTCAGTGCAAGGCCCCTGCTACATGACATTCCTGATGGTTGCAGTTGGCCTCTTGTGGGGACAGCTGCTGAAGATCAGACCCACACAGACAGTCTTCATTTCCTCCTGCCTGTCCCTGTCCAGCACGCCACTGGTCTCCCGCTTCCTCGCAGGGAGTGCCAGGGCGGACAAAGAAGGGGACATTGAGTACAGCAGTGTGCTGCTGGGAATGCTGGTGATGCAGGACGTCCAGCTCAGCCTGTTCATCGCGGTCATGCCATCTCTCATCCAGGCCGGGGGAGCGAACTACAGCAGTGTTTTCATGGAAGCCCTGAGACTGCTGATCCTCGTGGGGCAGATCCTCTTCTCCCTGGCAGCTGTCCTCTTGGTGACCGAGTTCCTGGACGTGTCCATGGAGCTTGGATGCTTTTTGGCCGGAGCTCTTTTCTCATCGCAAGGTCACCTTATAACCACAGAGATCATGTCCTGCATTGAGCCCATAAGGGATTTTCTTGCCATCATTTTCTTTGCTACCATTGGTCTGCATGTGTTTCCCACATTTGTGCTTTATGAGCTGACAATCCTGCTGATCCTCACCTTCTCTCTGGTGGTAATGAAGTTCCTCATCGCCATGCTGGTCCTGACTCTCATCCTGCCCCAGAGCAGCCAGCACATCAAGTGGCTGGTGTCCGCAGGCCTGGCCCAGGTCAGCGAGTTCTCCTTCGTCCTGGGCAGTCGGGCACGGCGGAGCGGCATCATCTCTCGAGAGGTGTACCTCCTCATTCTGAGTGTGACCACTCTGAGTCTCTTGCTGGCTCCAGTGCTGTGGAAAGCTGCTACTCTGAAATGTGTTCCCAGAGTTGAGCGCCGGACGAACGCTTGAGAGACGCTCTTTCCATCTTGTTATCTGCTGCTTCAGAAGATGTGCCATGTGCTCCTGGTTTGTATCTCCCTGGTCTAAACCACACATAGGCATAATTTAGACTGCTGATAGATTTTATAGACATGATGCACTACAAGGCCACAAGTTTAACCTGTTACACGGATAAGCCGGAGATATAGGGGTTGTGAGACTGATGCCAATCAAGCAGATAAATCATTCTGTTTATGGTTTCTCTTGTGCTGGTAGAATTAtccttttttaacattgtttacattgttttatatcatGCTTAGATGGCCTGCCATACACTTCCACATACAGACAAGATTTATCATGTCATTGAGCAAGGCAGtattacaagaaaatgtaattcagattCTTAGAATGTCGACATTTTAggggactttttttttgttaaatcataTTTGAATGGTATGATATAGCAAGATacgctatttatttatttatttattaaaaatccaTATCAGGGCCTGTTATTTAATGCTTCTAACAAGACGGTAACTTAAAAGTTAATTTTACCTTAATGAGGGTAGTGTTCTaaaatgattttgatttaaCAGATTTTCTGTGAACAGTGATCAGGTGTCAGGTGACAAAGTTTACTTCGAGTTGCgtaaaaagcaaatgtaattaatatgcatATCTTAAATTCTTCTGAGCAACCGATAGGGACCACATAAAAGCAACCGAAAAATGTCCATGTCAGAGTGGCACAATAGATAGTCATTCCTGCAATGCTCCACCTATGTAAAAGAGGCTGCATTGACAATGATCTTAGTTATGATTTCTCATTGTTCTGAGACAAGGTGACTTTACACATGACAGCATTTCCGCTGTTAGATCACAAGCAGAAGATGAAGTGGCagtttgtatgtaaatattagCATTAAGGAGCTGTGACACAGCTGCCTATCAGCTTTTACCATACTTGTCTGAGCAGGTGCTTCCTCAAGGTTGTTTtggatataaaaaatatttttgtttttgagtcaatattttttttttttatatatgagCCTTAtaggaaaattaaacaaagcatttgACTGCTTGTGCAGAATGTGTTCCAGTCTCTATTATTTATGCCAAGTCTCCTAGTTTGGATAGTGTTTTTACCTCTGCATATTCCTATCAGAAGGAAAGATAAAATtgcacaatacaaacaaatgttgCTAATATAGTCAGGTACCCAGTCCTCTTCCTGGATGGACCAAAGCTATCCTTGATTTTGGGATGATATAATCAGCctaaattatgttgtttttgttgttctttaaattattctatctcagaaaatgtaattctgtaaaGAATAAGTgccttaaaaatacattccacTACATTCCTCCCAATCAACCGTATATAGTGCGGTTTCCAACCTCATCATGTTTGCAACTATGCAGTTCTCTGTCCCTCATGTTTTTCAGCAGGCTGTGGGAGCAGGTTCTGTTTTCTGTAGCATACCACAGGTTCAGTATACTTAtagacatgcatttttaaaacgcATTGTCCGATTTACTACAGCAAAGTGGATTCTCTAAGCTAGTGCATTGTAAATATTACCATATATCTGACTAAAAGACATTAATGAAATTCTAAGCACAACCAAAgagactttcatttttttttttgtaatcccATGAAACACTGCAATTTAAATGATCATCTCTTACCAAATGTTGCCTTTTTGCCATTCTCTTTTTGCATAAATGTTATGAGCATTGCTGCTTTATTTCTTCAAATAGAGATTTTAGTCTTATGCTTTAttatatagtttaattatagCCTTGCGTTACAAGAAGTTATTGTTTGTACGTACATAGTAATTCTGTTGGGATAGAAATTAACAGTGCTGCTGTAGTTCTTTGCTGAAAGTacctaaataaattaaattgcacaGTGGTTTTTTGGggataatttgttaattaaaaagtacCTGTAACTGGACAGGCATGGTGTTCAATAGATTGCACTTCTGAGTTTTGAGACAGTACAAGGTTTATGAAGGTAGACTTTTCTGGTGGCATGTTGTACTGTTCTGACCTACTCAATACATTGTACTCATAACCTGGAGTTAAAAGGGGAATACTTACAATCTTTATCACAAGCTAAATGTAACGAGTTGTTATGTATTTTACCCATTTttagggttttattttgtagaatCAACAAATTCCAGGAGGtatgtttataaaatatttttagactTAAGCATTACAATTTTATGTTTCTAGAAACGTTTTAGGGAGAAGTGGGGGGGCCTGAAAATATAAATCTAGGATATGTGAATTTGTGTTTGctcacaaatgtaattatttttgtatgtgttgatATCTTGACCGTGTACAATAAAATggatacaaattattaaaattacattgcCTTGAAGTTGGTTTTGAATTACTTCACAATTTCTGAATGAACGAATATATAGGGG

Function

NR:

description
PREDICTED: transmembrane and coiled-coil domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014439 True 4606 mRNA 0.43 14 13882719 13903655

Neighbor

gene id symbol gene type direction distance location
AMCG00014427 NA coding upstream 55168 13820356 ~ 13827551 (+)
AMCG00014425 cul4a,LOC102780633 coding upstream 68840 13791149 ~ 13813879 (+)
AMCG00014426 NA coding upstream 94643 13749673 ~ 13788076 (+)
AMCG00014424 NA coding upstream 135221 13744121 ~ 13747498 (+)
AMCG00014421 NA coding upstream 232645 13630667 ~ 13650074 (+)
AMCG00014440 tfdp1,LOC108266453,LOC108426071,LOC107597491,LOC107748134,LOC107673714 coding downstream 2194 13905849 ~ 13921330 (+)
AMCG00014441 grk1,grk1a,LOC107748333 coding downstream 27227 13930882 ~ 13939105 (+)
AMCG00014442 NA coding downstream 41125 13944780 ~ 13965123 (+)
AMCG00014444 tpp2,LOC107665822 coding downstream 181857 14085512 ~ 14105494 (+)
AMCG00014443 NA coding downstream 234751 14138406 ~ 14143073 (+)
G70054 NA non-coding upstream 185848 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 502315 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 547534 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 900285 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 1282406 12600104 ~ 12600313 (+)
G70221 NA non-coding downstream 263791 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 563049 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1276190 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1446987 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 1547123 15450778 ~ 15451268 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 193531 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 630987 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3730806 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3874071 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6400159 7464503 ~ 7482560 (+)
AMCG00014456 NA other downstream 285909 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 398792 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1318259 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1771976 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 2225824 16129479 ~ 16139032 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_06208641_06214104 TMCO3 coding CI01000299 null 6208612 ~ 6214104 (-)