AMCG00014440 (tfdp1,LOC108266453,LOC108426071,LOC107597491,LOC107748134,LOC107673714)


Basic Information

Item Value
gene id AMCG00014440
gene name tfdp1,LOC108266453,LOC108426071,LOC107597491,LOC107748134,LOC107673714
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13905849 ~ 13921330 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014440
agtttttggTTTCCTGTTTGGTGTGCGGATTTAgacctcctcttcctcttcactgcCAACAAAAACAGGAGCAGAAGAGAAGCTGAATGACGGGAGTGCAGTTGGGAGCTTTTCCAGAACATCCTGAGCCATTCTTCCTTTATAAGACATCTTCACATCCCTTCTTCCAGAATTTGGTAACATGGCAAAAGATGCTGGTCTAATAGAAGCAAATGGAGAGTTGAAGGTTTTTATAGACCAAAATCTCAGCCCAACTAAAGGTATAGTGTCACTGGTGGCCGTTCACCCGTCTGCAGTCACGACGCTGGGGAAGCAGCTCCTGCCGAAAACGCTCGGTCCCTCCAATGTCAACATCACACCACACATGGTCATAGGCACCCCTCAGAGATCCACAGGCACAAATGCCATCCTGGTGGGCAGCCCCCACACACCAAACACCCAGTTCATCACACAGAGCCAAGCGGCCGACTCCTCGCCATGGTCCACTGGaaAGCGGAGTAAGAAGGGAGAGAAGAATGGCAAAGGGCTCAGACACTTCTCCATGAAGGTGTGTGAGAAGGTTCAGAGGAAGGGAACCACTACCTATAATGAGGTGGCCGATGAACTAGTGGCCGAGTTCAGCAACACGGACAACCACATCTCCCCTAACGATTCAcatgTTTATGACCAGAAGAACATCAGACGCAGAGTTTATGATGCCTTAAATGTGCTGATGGCGATGAACATCATCTCCAAAGAGAAGAAGGAAATCAAATGGATAGGACTCCCCACCAACTCAGCTCAGGAATGTCAGAATTTAGAGgtgGAGAGACAAAGACGGCTTGAaagaataaagcaaaaacaatccCAACTACAAGAACTCATTCTACagcaaATTGCCTTTAAAAACCTTGTGCAGAGAAACCGTCAAGAAGAGCAGCGGACGAATAGACCCCCTCCTCCCAACTCAGTCATTCACTTACCATTCATCATCGTGAACACCAGCAAGAAGACAGTCATTGATTGCAGCATCTCCAATGACAAgtttgaatatttatttaattttgacaaCACATTTGAAATCCATGACGACATCGAGGTGCTGAAACGCATGGGCATGGCATGTGGCTTAGAGGCGGGAAAGTGTTCACCAGAAGACCTAAAGACCGCCCGGAGCCTCGTGCCCAAGGCTCTGGAACCATACGTCACAGAAATGGCTCAGGGATCAATAAACAGCGTGTACATTTCTGGGGGGATGTCCTCTAATGGTGGCCGGTACCACACTGGGAGtgaCAGCGGTGCTGATGGCACAATGGCCTCCAGCTCGAACGGGTCCCACTACAGCGGCTCTAGGGTGGAGACTCCTGTGTCCTACATGggtgatgaagatgaagaagatgatgattatgatgagaATGATGATGAAGACTAACCCCGCCCACCACAACCTCTGTTTCCCACAACACCACAGCCATCTTCAGGAGTATCCCCTCTGTCGCTCTTGCACTCTCTACTTTGGCgcctgtgattttttttgtttgtttgtttttatttcatggcTAGGCAGTCTGTTATAATAGCCTAAAGACCAGATGAAAGACATATTGTAGAATTCTGTTTGGCAAATGCTACAGTGGTGAGATGTTTTAACTCTACCCTGTCCAGTCGCCTATAGTGAAGAGTCCACAGATGAGGAGCAACGTGCTGGCCAGTGGAGTTTGGCAGCACTGTCAAATGCACGCATTCAGTCCAGTACTGTTGTCGAGATTGTCATCTCAACCAGTCCCCGGTCAGGTTTGATGCAGAGCAAGCTACTAGGCAAATAGAGAATGATGTAGATAGGGATCcttaatgtttgtgtgttttttttattttttattttattatttttatttttttttgttaaattcagAATCCTCTTGAGTTGCCCTTGGTTCATCTTAACCCATCTCAGTTCATTATTACAAAGGGATTCCCTCTAAAGCAAACAAGTCTGTTCTTTGAGAAACCTGTACTGCAGTATCggtataaaataaagtatgtttattttttatttatttcttgggaAGTGTCTGCAgggtatttgattttattttttttttatttaggctGGTTGCCTCCAAAGACTGATAGGCAAAACCTAAATGCTCAGTTGCATCGGAGAATCTTTTTTTTTNNNNNNNNNNtttttttattactgtttgtgTAAAACAGTTCCATGGTTTTCTGGTTTGTACGTTTGGGTTTGTATAATGAGTTCACTTTTTCTtccccattttgttttgttttactgccaTTTTCAGGGCAGCTATATTAGAGGATTTGTTGACAGTTGAAATGACTAGGTTTATAGAAGGTGCCTGAATTCTCACAGGCAGACATCTgaaacttattttattgttgtgtttacatgcatacaaatctcctttttaaacaaaaaatgtactgaTACTTAAGTACTTTTTTCTGTAATCTAATAtaagtttgaaattaaatatagagAATGTTTTAACAGTTTTTGTAACTCAGATTTGTCAGTTTTTCTTTGGaagatttttaaaagttttataaAGCAGTTGCTGAACAGgtagtttccttttttatatttagatatataaatatatatatatacacactgattACTTCACAGCTACAGTAAGAGAGCAAGAACTGTTGGCCTCGTCCTGTTAAAAGAcgcaagtctttttttttttttttaataagacaaCAGAACGTTTCTGTAATTGATTGGAGTTCACTGAGACTTCATTGGTCTGATCTGTTCAATTTGCTTCTGTTAGATTTATTAATAAACGGAGCATgggcattttttttaagaaaa

Function

symbol description
tfdp1 Enables protein domain specific binding activity. Contributes to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

NR:

description
PREDICTED: transcription factor Dp-1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014440 True 2821 mRNA 0.41 12 13905849 13921330

Neighbor

gene id symbol gene type direction distance location
AMCG00014439 LOC107748345,LOC107577958 coding upstream 2194 13882719 ~ 13903655 (+)
AMCG00014427 NA coding upstream 78298 13820356 ~ 13827551 (+)
AMCG00014425 cul4a,LOC102780633 coding upstream 91970 13791149 ~ 13813879 (+)
AMCG00014426 NA coding upstream 117773 13749673 ~ 13788076 (+)
AMCG00014424 NA coding upstream 158351 13744121 ~ 13747498 (+)
AMCG00014441 grk1,grk1a,LOC107748333 coding downstream 9552 13930882 ~ 13939105 (+)
AMCG00014442 NA coding downstream 23450 13944780 ~ 13965123 (+)
AMCG00014444 tpp2,LOC107665822 coding downstream 164182 14085512 ~ 14105494 (+)
AMCG00014443 NA coding downstream 217076 14138406 ~ 14143073 (+)
AMCG00014445 cpox,LOC107717573,LOC107585846,LOC107657924,LOC107550392 coding downstream 229969 14151299 ~ 14157726 (+)
G70054 NA non-coding upstream 208978 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 525445 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 570664 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 923415 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 1305536 12600104 ~ 12600313 (+)
G70221 NA non-coding downstream 246116 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 545374 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1258515 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1429312 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 1529448 15450778 ~ 15451268 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 216661 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 654117 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3753936 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3897201 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6423289 7464503 ~ 7482560 (+)
AMCG00014456 NA other downstream 268234 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 381117 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1300584 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1754301 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 2208149 16129479 ~ 16139032 (+)

Expression


Co-expression Network