AMCG00014453 (LOC104958986)


Basic Information

Item Value
gene id AMCG00014453
gene name LOC104958986
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14119846 ~ 14137980 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014453
CGGCGACAACCATATTGAAAGTTTATGCGGTTATATCACATACACCAAGAGTGTGTCATGCTTGTACACAAAGACTGGACAGTTCATTTCACCACGAAACAAAGTTCAGTTAGATGTTTGGTTaccacacttaaaaaaaatacatgaatctgCAAACCGTTTGTTTTAGATTCTTGCTCTTCACCTGGGTATAACACGTTTCTGATGTACAATGGGAGTACAGGGCTTGTGGAAGCTGCTTGAATGCACAGGAAAGCCAATTAACCCCGAGACCTTGGAGGGGAAAGTCCTTGCTGTTGACAttagcatttggctgaatcagGCCGTGAAGGGACTGAGGGACCGTGATGGGAACACGGTGCAGAACGCACACCTCCTCACTCTGTTCAACCGCCTCTGCAAGCTGCTGTTCTTCAGAATACGGCCCATATTTGTCTTTGACGGTGATGCACCCCTGCTCAAAAAACAGACACTGgCTCTCAGAAGGCAGAGAAAGGAAGACGTTACTAAGGAATCGAAACAGACCTCAGAGAAGCTCTTGAGAACCTTCCTGAAGAGACAGGCCATCAAGGCTGCTCTGGGCGACAGGAGTCAGGAATCTTTGCCCAGCATTTCCAAAGTCCACCGGGAAGAAGTGGATGATATCTATGTTTTGCCTGCCTTGGAAGAGAAGGAGCAGAACAGCTCTGATGAAGAAGCTGAGAAAGAGTGGGAGGAAACCGCAAACAACAGGCGGATGTTTcagCAAGAGATATTTGATGACCCAAACTCCGTGGACATAGACTCTGAAGAATTTGCCATATTACCTGCAGAAATGAAACATGAGATCTTAAAGGACATGAAGGAGTTCAGCAAAAAGCGAAGAACGCTGTATGAAACACCCCCTGAGAAATCTACGGACTTCTCTCAGTACCAGCTGGCTGGGCTTCTAAAGAGGAATAACCTGAATCACCGCATCAAGACGGTGGAGAAGGAGATGAACGAGCAGAGTTCGGGGGTAGTCTCATCAGAGTACAGTGTGGAGGAGGGCTCCAACAGGAGCATGGAGACCCACCGGCTTATGTCAGAGGACACCTCCCACTACATCCTCATCAAAGgGTCAAAGACTAAAGAAAAAGATCCAAAAAAACTGCCACCAGTTATGCCCTGGACAAGTACCTCCAAGGCAGTTAGAACTGAGCCTCCCCTGTGGCATCCTGTTGCCGAGGATAGTCTGGAGGAAACCCCCCTATCCCCCCACAGACCCTCCTCAGCCCCCCAAGATGAAAGCTCTTGCAGTAGAGATGCTGCTgctcctccctctcccaggACCCTGCAGGCCATACAGGCAGCCCTGCTGGACAGCAGCTCAGATGAGGACATCCAGATCACAGGCACCCAAAGCGGCTGGGCACCAGAGAGAGGGGTTGAAGGGAACGCAAGAGAACTGTCACCTCGGACTGTGCAGGCCATCCAGAAAGCCCTGACTGAAGATAACAGTGAAGAGAACAGAGATGTTGTGCTCTTTGGAAATGCATACCAGCAAGATGGGAAAGTGATTGACATCAGCAGCTCAGATGAAGAGATGGTAGAAGCCATCAGCGAGAGGAATAAGGCTTTCCACTCCTTCGtagaaatgcaaaatgcatCTCCAAAGGAGACTGTACCCCTTAAAAGAGGCATTCCAGGGGAGAGCAAAGGGGACAATGCAAAACCAGTGTGTAATATGACAGAGCAGGCACTTTCCCTCGCCTCCAGTCTGGATGTGACAAAGGAAGATCTGGAAAAGGAATCGGCGAGGGTTGTCCTTCCACAGACAGCGGTTCAGAGCAGCAGCGGGGACTTGTCGGGGGTCGCAGTTTCACAGATTGTCATTGACTCTTCCCCTGAGAAGAAGGCCGAGAAGAGAAGCACAGATAGTAATCTGGAAGATGGCAAACCTGAGAGGACCTCTGAGGACATACTGCTCCAGCCTGCTGGAAGTCCCGAAATAAGATACTCAGAAAACAAAGCACTCGACACGGTGAGCGAAGAGAGTGATTCAGAAGAGAGCTTTATTGAGGTGtctgaggaagagagggaggaaacACCTAATCCTCAGCTCCCTGAAGAGATCAGCACTGAGCAGCCCACTGTGGAGGCACTACAGGGGCCTCCTAACAAGCCAGAGAGCCTCCCTGTGAGGGAGCAGGACGGCGgtgaggaggtggagggcaTGGAGCACCACGTGTCTGAGGCACAACCAGACAGCCAGGACACCGCAGCTGCCAGCGAGTGGGAAGACATCAGCATGgaggagctggaggtaCTGGAGAACAGCCTTTCGGTCCAACAGAGCAGCCTGCAGGCCCAGAAACAGCAGCAGGAGCGCATCGCCGCCACCGTCACTGGGCAGATGTACTTGGAAAGCCAGGAACTGCTGCGCCTGTTTGGTGTGCCTTTCATCGTTGCTCCCATGGAGGCTGAGGCACAGTGCGCCATACTGGACCTCACCGATCAGACTAACGGGACCATCACCGACGACAGTGACGTGTGGCTTTTTGGGGCGAGGCATGTGTACAAGAACTTCTTCAGCCACAACAAATATGTGGAGTACTACCAGTATGTCGATCTTCAGAACCAGCTAGGTCTGGACCGCAGCAAGCTCATCAACCTGGCATACCTGCTGGGCAGCGACTACACGGAGGGCATCCCCGGGGTGGGCTACATCTCTGGCATGGAGATCCTCAATGAGTTCCCTGGACCAGGAATGGAACCTCTCCTGAAATTCTGTGAGTGGTGGACGGAGGCTCAGAAGAATAAGAAGCTGAGGCCCAACCCCAACGACACCAAGGTGAAGAAGAAGCTGCGAAATGTCCTGCTGCACCCTGGCTTCCCCAACCCCGCCGTGGCCCAGGCCTACCTCAAACCGACGGTGGATGACTCCCAGGCCAGCTTCTCCTGGGGCCGGCCCGACCCGGAGCAGATCAAAGAATTCTGCAAAAGTCGTTTTGGCTGGAACGGGAAGAGAACGGAGGAAACCCTGATGCCTGTAATGAAGCAGCTTAATGCCCAGCAGACCCAGCTACGTATCGACTCCTTCTTCAGGCTAGAGCAGCAAGAGAGGCAGGCCATCAAGAGCCAGCGCCTGCGTCGTGCCGTCACATGCCTCAAGAGGAAGGAGcgtggagaggaggaggaggcagaggaggaggaaaaagaaGGGACCGTTCAGGGGAAGGACCCCACTCCAACAAAAGGGAAAGGGACGAACACCGTGGGGAGGGCAAGGCCCAACAAACGCCAGTCTGGGTCGAAAGACAAGGAACCCCTGGAGACGCCGGTCAGAGGAGGGGGCTTCTTGTATTCAGAggcaaactcccagctgcctgAGCCATTGGGGAAAGACTTGGATGGAGAGACGGCAGACTTGAAGAAAGAACAGTCAGTGTCTCGGGCACAGAAAGACAGGTCTCCTGTGCCTCAGGCCAGCCTCAGTCCTCCCAGAGCCGTCTGTAGCAGCAGTTCGAGTGAGGAGAGCGACGGGGACAGTCGGGTCACTCTGGTCACGGCGCAATCCATTTTTCACAACCACAGGGGCCGAGGAAAGACAGCGTCCagagggaggaagaagaggaaagtCTGAATGGTGGTTTTGTGGGGAATGGATCACTAAGGGAAACGTCTGTATTTATTAACTTGTGATatgaaatatgcaaatgttttcatggtgtatatgcattttgtttttaagatagtaacagaaaaatgtctgtgaaaGACACAAATCCCTTTGCCTTTTAGACATGGTTTTGAAGACACACTTCacctaattaaattaagtaaggCAGGTGCAGCACAGGAAGACACTGTTAAATGATTGACTTCTGGTCTCGACCTTTTACATATTAGCACTTGCCAATCGTTTATAAATGTTCAAACTGATCAGTTGGTGACAATTTAACCTtatcatgtttgtgttttgtctcttgtgtttatttaatatatataatgtgaaacTCACCCAACACTGCTGTAAAGACAAATCAGATTATGTAACTTCAGCAGAGCCATGTCATTGCAGTGtaatcatatatattatacGCCAGTCTTTGTACTTATTTGTACTTAATTGTGAGTTTTCAGGGGAGGTTTGTGTTTGGATATAGTGTACGTTTCCAGTCATCTGTGACTTGATATGCCAATAACAGCTGGATATGAAAACCTTGTGGCTGTTTTTCAAAGAATTCAATCTAGCTTTGGGATTATACTGTTGCTCTGTCCAGTATGTGCCTGTTAATCCAGTGCCAGGCTCGCCCACCTCAGTCACAGTCTGCCACTCTTCAGAAATATGTGGCATTCGCAGTCTGAGCTATTTATAAGTGCTTGGAAGACCTCCATTGTACCCCAAGATTAATTCTTTCCAGAAAACTATTTGGATCATTTGTTATTTGTCTATTTCTAAAGTGCCTTACTCTGGTTCTGGTGAGGATTGTAAGCAGTGAGCCATACACTTTGTATTACAAATGAGCTCATTGCCCTTTTTATAAACACCCATGGGTCAGCTAAGGCATTTTAAGTTTTCTGTTCTGCTTTTGAACATTAAACATGCAGTCATTGAGTGATCGCTGGGGAAACAGTGCTGCAAGATCACGGTTGTCAGACAGACTCcacagcaaataaatacaaatactgataTCTTTAAACTGCGGGTCGGGATGTTTCATGTGCCGGAGTCCCTTCAATGCCCTGTGCCCTGTGAAACTGCTTGGTAACACATTAACAGTAACTGATCTCTTAATCTAAACATGACACATTTCCGTGAGGTAGGGGGaccttaaattaatattacTACTGTGTTATGTCATTGGAGGCCCACTACTGTTCTCTTTTTTAGCAGTACTGTTATGACAGTTGCAAGCTGTAAATAATGCCCTTAAATGCGTCTGACCTGGTTGTGTCAGTATGCAGCTGCTGCAGCCTGTCTTGGGCAGTGAGCAGGGCTGTGTGGTGTGCTGGTCACTGGCGCTGGACAGCATTGTGCCTTTTCTACGCACCTCTGAGTAGCTCCAACACTAAAAGCAAGAACAGAAACGGCACAGAATAAGGTACGTCCTAAAACTGCTGTCTAGAAGGCTGATGTTCCAGCTGACTTGTGGAGCCCTACGAGTATTGGGTGTGCCACCTGTACATTAGTCTGGAAATTAGATGATGGTGGCAGAAGCATTAGCACAGCCAGGCCCACTAtctctctgttttttaattgttgtccAGGATGATCCAGCCCAGTGAAGTAGATTCTCCCTGTACGGGCAGCGATGCAGGCTGTGGTTCACAGTCGGAGAAGTGTGAAGGTGAAAAGATGTATACTTGCTTCATTAGCTGTCTTTTCCCCTGTACATTCTATGAGCTTGCAGAATGGTATTTGGCTGATCTGCAAATTGTTGTTTACTCATTTTGTTGTGTTGGGAACCATCCCCTAATTTTCAGGgtgctaaataaataatcactgtACAGTCTATGCATATGATCTTGATCAATtcttatgtttaaatgtttggtAGCAGAGTGAGGAGCTTAATGGAAAGCCTTTTATTTCTGTTGGGTTCTGTGTGGTTTATTGCGTGAAGTTAAAACAAGGTAGAACTCCCTACTCAGCTGTTTGACAAAATGGAGGAGTAGCAGCAATCACGATTTAAAAGGGACAGAGCCATGCAGCCACAGAGATAAACTGTAACCAGTGAACAGAGAAATGGGTGTGTGCAAGATTGGGTGTCtaatacaacacaatgcaacatttcataaaatatataataggtTTCTTTGACAACTGTTTAAAGATTATGCAGAACCTCAAATGCTGATTTTTCCCAACAGCAAAATATATCCAAAGACTCTGATATGTGCAagtgtattataatatactacacACTAGACAAAAAAGTGGTTTTCAAGGAAGTTTTGTGAGTGGACACATATTTGGCTTTCTATGAGCTTCAAGGGCACACAGTTTGCACTGCACCTGAATTACATCATCTTCCTGCAAGACCCAAACCCATCCTTCCCTAATATTTATTGGTTGCTTTTCTGGCAGCAGACACATAGAAACAAAAAGTAGTTTTACAGTAACCCACCCTGGCCATAATACACCTCTAAGACATGCAAACTATGGCACAGAGGGCAGCCTGGCCTCACAGAGTTTTGTTCATACAATTTTTCTAAGATTTCTGGTTTTAAATGGtctatgaaaatattgaaattgcagttgtaaatggaaatgtaatgacaaattgttgaatgcatttattatttaataaagatttGCAGGCAACAGGCTTGTTGTGTATTGTGGGTGTGTATTTTACCCTCTGTGTGTTCTGGCTGTTTGCAGAGGGTGCCAAGGATTCAGAGCTGGTTAGTGCCATCATGAGCAGACGCTTCTGCCCTTCTATCATCACCACGGTAGCCTGGGAGGGATATCATTTTGCCAACTATGAGATTAAGATCACGG

Function

NR:

description
PREDICTED: DNA repair protein complementing XP-G cells homolog

GO: NA

KEGG:

id description
K10846 ERCC5, XPG, RAD2; DNA excision repair protein ERCC-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014453 True 6469 mRNA 0.47 16 14119846 14137980

Neighbor

gene id symbol gene type direction distance location
AMCG00014455 NA coding downstream 11367 14107295 ~ 14108479 (-)
AMCG00014451 NA coding downstream 77979 14005191 ~ 14041867 (-)
AMCG00014452 NA coding downstream 117112 13965617 ~ 14002734 (-)
AMCG00014450 NA coding downstream 190423 13923599 ~ 13929423 (-)
AMCG00014433 dcnl2,dcun1d2,dcun1d2a,LOC105908025,LOC108426072 coding downstream 237723 13866643 ~ 13882123 (-)
AMCG00014448 NA coding upstream 6183 14144163 ~ 14147502 (-)
AMCG00014449 NA coding upstream 29466 14167446 ~ 14178388 (-)
AMCG00014454 NA coding upstream 45466 14183446 ~ 14185778 (-)
AMCG00014475 NA coding upstream 1042792 15180772 ~ 15188656 (-)
AMCG00014474 gk,LOC105019723 coding upstream 1052131 15190111 ~ 15214067 (-)
G70238 NA non-coding downstream 17690 14099364 ~ 14102156 (-)
G70169 NA non-coding downstream 198516 13919521 ~ 13921330 (-)
G70094 NA non-coding downstream 347574 13770177 ~ 13772272 (-)
G70091 NA non-coding downstream 358426 13759226 ~ 13761420 (-)
G70063 NA non-coding downstream 422875 13694757 ~ 13696971 (-)
G70315 NA non-coding upstream 907872 15045852 ~ 15059774 (-)
G70346 NA non-coding upstream 1100823 15238803 ~ 15242333 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding upstream 1236258 15374238 ~ 15376774 (-)
G70407 NA non-coding upstream 1245653 15383633 ~ 15386700 (-)
G70425 NA non-coding upstream 1368324 15506304 ~ 15506511 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 986095 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 2452309 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2982760 11125029 ~ 11137086 (-)
G69537 NA other downstream 3321699 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 4058616 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 2584093 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 3308888 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 3451287 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 3852671 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5063823 19201803 ~ 19203567 (-)

Expression


Co-expression Network