Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00014462 |
| gene name | dmd,LOC106574978 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 14684733 ~ 14692283 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| dmd | Predicted to enable actin filament binding activity and zinc ion binding activity. Acts upstream of or within several processes, including sarcomere organization; skeletal muscle organ development; and somatic muscle development. Located in sarcolemma. Is expressed in several structures, including axial mesoderm; axis; chordo neural hinge; musculature system; and somite. Used to study Duchenne muscular dystrophy and muscular dystrophy. Human ortholog(s) of this gene implicated in cognitive disorder; dilated cardiomyopathy (multiple); intellectual disability; and muscular dystrophy (multiple). Orthologous to human DMD (dystrophin). |
| description |
|---|
| PREDICTED: utrophin-like |
| id | name | namespace |
|---|---|---|
| GO:0048741 | skeletal muscle fiber development | biological_process |
| GO:0007525 | somatic muscle development | biological_process |
| GO:0016203 | muscle attachment | biological_process |
| GO:0045214 | sarcomere organization | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0042383 | sarcolemma | cellular_component |
| GO:0016010 | dystrophin-associated glycoprotein complex | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00014462 | True | 555 | mRNA | 0.49 | 5 | 14684733 | 14692283 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014457 | tmem47 | coding | upstream | 222625 | 14452526 ~ 14462108 (+) |
| AMCG00014459 | NA | coding | upstream | 304714 | 14371145 ~ 14380019 (+) |
| AMCG00014460 | NA | coding | upstream | 443238 | 14238011 ~ 14241495 (+) |
| AMCG00014458 | NA | coding | upstream | 449321 | 14223516 ~ 14235412 (+) |
| AMCG00014447 | NA | coding | upstream | 521411 | 14162125 ~ 14163322 (+) |
| AMCG00014465 | NA | coding | downstream | 27611 | 14719894 ~ 14750619 (+) |
| AMCG00014463 | NA | coding | downstream | 75204 | 14767487 ~ 14811135 (+) |
| AMCG00014466 | NA | coding | downstream | 131509 | 14823792 ~ 14828121 (+) |
| AMCG00014467 | NA | coding | downstream | 228130 | 14920413 ~ 14989067 (+) |
| AMCG00014464 | NA | coding | downstream | 330716 | 15022999 ~ 15043455 (+) |
| G70271 | NA | non-coding | upstream | 216989 | 14466704 ~ 14467744 (+) |
| G70221 | NA | non-coding | upstream | 513721 | 14167446 ~ 14171012 (+) |
| G70054 | NA | non-coding | upstream | 987862 | 13694815 ~ 13696871 (+) |
| G69961 | NA | non-coding | upstream | 1304329 | 13352333 ~ 13380404 (+) |
| G69959 | NA | non-coding | upstream | 1349548 | 13334214 ~ 13335185 (+) |
| G70286 | NA | non-coding | downstream | 487562 | 15179845 ~ 15180820 (+) |
| G70378 | itm2b,LOC108430053 | non-coding | downstream | 658359 | 15350642 ~ 15430852 (+) |
| G70409 | NA | non-coding | downstream | 758495 | 15450778 ~ 15451268 (+) |
| G70413 | NA | non-coding | downstream | 808275 | 15500558 ~ 15500832 (+) |
| G70415 | NA | non-coding | downstream | 813531 | 15505814 ~ 15506048 (+) |
| AMCG00014461 | NA | other | upstream | 327865 | 14302447 ~ 14356868 (+) |
| AMCG00014456 | NA | other | upstream | 479719 | 14189564 ~ 14205014 (+) |
| AMCG00014423 | pou2f1b,LOC107748141 | other | upstream | 995545 | 13655238 ~ 13689188 (+) |
| AMCG00014407 | LOC107725344 | other | upstream | 1433001 | 13246309 ~ 13251732 (+) |
| AMCG00014345 | NA | other | upstream | 4532820 | 10147979 ~ 10151913 (+) |
| AMCG00014470 | NA | other | downstream | 529631 | 15221914 ~ 15242333 (+) |
| AMCG00014490 | rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 | other | downstream | 983348 | 15675631 ~ 15685899 (+) |
| AMCG00014508 | NA | other | downstream | 1437196 | 16129479 ~ 16139032 (+) |
| AMCG00014525 | NA | other | downstream | 1773338 | 16465621 ~ 16469209 (+) |
| AMCG00014553 | atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 | other | downstream | 2672515 | 17364798 ~ 17487050 (+) |
