AMCG00014469 (dmd,LOC106574979,LOC107692624,LOC107665951)


Basic Information

Item Value
gene id AMCG00014469
gene name dmd,LOC106574979,LOC107692624,LOC107665951
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15089695 ~ 15137536 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014469
CACCAGACGCAGACAACCTGCTGGGATCATCCCAAGATGACAGAGCTCTACCAGTCCTTAGCTGACCTGAACAATGTCAGGTTCTCTGCCTACAGGACGGCCATGAAGCTGCGGAGACTGCAGAAGGCCCTTTGCTTGGATCTCCTGGGCCTGTCGGCAGCGTGCGATGCCTTTGACCAGCACAACCTCAAGCAGAACGAGCAGCTCATGGACATCCTGCAGATCATCAACTGTCTGACCGCCATCTATGACCGCCTGGAGCAGGAGCACAACGCCCTGGTCAACGTGCCTCTCTGCGTGGACATGTGCCTCAACTGGCTCCTCAACGTCTATGACACGGGCAGGACAGGGAAGATCCGAGCTCTGTCCTTCAAAACCGGCATTGTTTCACTCTGTAAAGCACATTTGGAGGACAAGTACAGATATTTGTTCAAGCAGGTGGCCAGCCCTACGGGTTTCTGTGACCAGCGAAGACTGGGGCTCCTCCTGCATGACTCCATCCAGATTCCCCGGCAGCTGGGCGAGGTGGCCTCATTTGGCGGCAGCAACATTGAGCCCAGCGTGCGGAGTTGTTTTCAATTCGCCAACAACAAGCCAGAGCTAGAGGCAGCTGTGTTCCTGGACTGGATGCGCCTGGAGCCCCAGTCCATGGTATGGTTGCCTGTTCTGCATAGAGTGGCAGCTGCGGAGACTGCCAAACACCAGGCCAAGTGTAACATTTGCAAGGAGTGTCCTATTATTGGATTCAGGTACCGAAGCCTAAAGCACTTTAACTATGATATCTGCCAAAGCTGTTTCTTCTCTGGACGTGTTGCAAAAGGTCATAAAATGCAGTACCCAATGGTGGAGTACTGCACACCGACCACTTCAGGAGAGGATGTACGTGATTTTGCCAAGGTGTTGAAAAACAAGTTCAGAACAAAGAGATATTTTGCAAAGCACCCCCGAATGGGATACTTGCCCGTCCAGACAGTGTTGGAAGGAGACAACATGGAAACACCTGCATCCTCCCCTCAGCTGTCACATGATGATACACATTCAAGAATTGAGCATTACGCTAGCAGGCTAGCAGAAATGGAGAACCGGAATGGATCTTATCTCAATGACAGCATCTCGCCGAACGAAAGCATCGATGACGAACACTTGCTTATCCAGCATTACTGCCAAAGCTTGAACCAAGAGTCTCCGCTAAGCCAGCCCCGCAGCCCCGCACAGATCCTGATCTCCCTGGAGAACGAGGAGAgaggggagctggagagggtCCTCAATGACCTAGAGAAGGAGAACAGgaaTCTGCAGGCAGAGTATGACCGACTGAAGCAGGCCCATGACCACAAGGGGCTGTCCCCACTGCCCTCGCCCCCCGAGATGCTGCCCGTGTCCCCTCAGAGCCCCCGAGACGCTGAGCTCATCGCCGAGGCCAAGCTCCTGCGCCAGCACAAGGGCCGTCTGGAGGCCAGGATGCAGATTCTGGAGGATCACAACAAGCAGCTGGAGTCGCAGCTCCACAGACTGAGACAGCTGCTGGAACAGCCCCAGGCCGAGGCCAAGGTCAATGGCACCACCCTGTCGTCTCCGTCTACCTCCTCACAGCGCTCCGACAGCAGCCAGCCCATGCTGCTCCGCGTCGTGGGCAGTCAGACCACAGAAACTATGGGAGACAATGATCTTCTGAGTCCAACACAGGATGCAAGCACAGGCCTGGAGGAAGTGATGGAGCAGCTCAACAACTCGTTCCCTAGCACCCAAGGTCACAATGTAGGAAGCCTCTTCCACATGGCGGATGACTTGGGCAAAGCAATGGAGTCGTTGGTGACTGTGATGACAGATGACGAGGCTCTGGActag

Function

symbol description
dmd Predicted to enable actin filament binding activity and zinc ion binding activity. Acts upstream of or within several processes, including sarcomere organization; skeletal muscle organ development; and somatic muscle development. Located in sarcolemma. Is expressed in several structures, including axial mesoderm; axis; chordo neural hinge; musculature system; and somite. Used to study Duchenne muscular dystrophy and muscular dystrophy. Human ortholog(s) of this gene implicated in cognitive disorder; dilated cardiomyopathy (multiple); intellectual disability; and muscular dystrophy (multiple). Orthologous to human DMD (dystrophin).

NR:

description
PREDICTED: dystrophin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014469 True 1848 mRNA 0.55 15 15089695 15137536

Neighbor

gene id symbol gene type direction distance location
AMCG00014464 NA coding upstream 46240 15022999 ~ 15043455 (+)
AMCG00014467 NA coding upstream 100628 14920413 ~ 14989067 (+)
AMCG00014466 NA coding upstream 261574 14823792 ~ 14828121 (+)
AMCG00014463 NA coding upstream 278560 14767487 ~ 14811135 (+)
AMCG00014465 NA coding upstream 339076 14719894 ~ 14750619 (+)
AMCG00014468 NA coding downstream 26676 15164212 ~ 15179155 (+)
AMCG00014471 NA coding downstream 110235 15247771 ~ 15253971 (+)
AMCG00014472 wdfy2,LOC106582235 coding downstream 136025 15273561 ~ 15287276 (+)
AMCG00014476 NA coding downstream 195393 15332929 ~ 15336221 (+)
AMCG00014480 med4 coding downstream 228160 15365696 ~ 15371378 (+)
G70271 NA non-coding upstream 621951 14466704 ~ 14467744 (+)
G70221 NA non-coding upstream 918683 14167446 ~ 14171012 (+)
G70054 NA non-coding upstream 1392824 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 1709291 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 1754510 13334214 ~ 13335185 (+)
G70286 NA non-coding downstream 42309 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 213106 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 313242 15450778 ~ 15451268 (+)
G70413 NA non-coding downstream 363022 15500558 ~ 15500832 (+)
G70415 NA non-coding downstream 368278 15505814 ~ 15506048 (+)
AMCG00014461 NA other upstream 732827 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 884681 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 1400507 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 1837963 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 4937782 10147979 ~ 10151913 (+)
AMCG00014470 NA other downstream 84378 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 538095 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 991943 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 1328085 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 2227262 17364798 ~ 17487050 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_01844908_01942907 DMD coding CI01000300 null 1844298 ~ 1942907 (-)