AMCG00014473 (ints6,LOC106533356,LOC106582497,LOC107723679,LOC107567782,LOC107685346,LOC107725253)


Basic Information

Item Value
gene id AMCG00014473
gene name ints6,LOC106533356,LOC106582497,LOC107723679,LOC107567782,LOC107685346,LOC107725253
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15254396 ~ 15269030 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014473
TAGAGGCAAAGTGTCAGAGGACTATTCTGTTCgggttttttttccagaaactTGCGTAAAATTTACAGAATAATAACCAAAacgaaaaaaatatatatatatcccttgTAAACCAATAACCTTCCCCCAGGGTTTGaggtttatttgaaataattaaggATACAGGGCATCTACATCCACTCTTCTTACACTTTCCAAAGAATGTGTGAGATCCATGATTACTGAAGCAGCAGGAGGGGAGAAAAagactgatttgtttttgggCCGATCTACTGACACTAAGTCCATGCAGTACGTGTCATCACCAAAACAATGCCCGTTTTACTTTTCCTGATAGACACGTCCGCTTCAATGAACCAGCGCACCCATCTGGGCACTACCTATCTGGACATAGCCAAAGGCGCTGTTGAGACTTTCATGAAGCTCAGATCCCGAGATCCGGCGAGCAGGGGCGACAGGTACATGTTGGTTTCTTTCGAGGAGGCGCCCTATGGGATCAAGGGTAGGAATCCATTTTTCCTGGAGCCTTCAGTAATAGTTACGATCACTGATGGGAACAAGCTGACCAGCACCACTGGAGTTCAGGAGGAGCTCCATCTCCCCCTCAACACTCCTCTGCCGGGCAGCGAGCTGACAAAGGAGCCGTTCCGTTGGGACCAGCGTCTGTTTGCCCTGGTTCTCCGCATCCCTGGACACGTGGCAGTGGAGCCCGAGCCTGTGGCTGGTGTCCCACAGGATGAGTCGGCCATCACCCCCATGTGTGAAGTGACCGGAGGTCGTTCTTATAGCGTTTGTTCCCAGAGAATGTTAAACCAGTGCCTGGAGTCGTTGGTGCAAAAAATTCATAGTGGGGTGGTGATTAACTTTGAGAAGACCGGGCCGGATCCTCCCCCTGTAGAAGATGGGCCCCCTGAAGCTCTGAAGCCTGGGCCCCAGCCATGGCATTCCTGTCACAAGCTCATCTACGTCAGACCCAATCCCAAGACTGGCGTCCCCATCGGTCACTGGCCAATCCCAGAGGCATTCTGGCCCGATCAGAACTCCCCCACTTTGccCCCCCGCACTGCCCACCCTCAGGTGCGCTTTTCCTGTGTGGACTCTGAGCCCATGGTCATCGACAAGCTTCCCTTCGATAAGTATGAGCTGGAGCCGTCTCCGCTCACGCAGTACATCCTTGAGAGGAAGTCCCCACACATCTGCTGGCAGGTGTTTGTGTGCAATAGTGCCAAGTACAGTGACCTGGGTCAGCCATTCGGCTACCTGAAAGCCAGTACAGCCCTGAGCTGTGTGAATCTATTTGTCATGCCTTACAACTTCCCTGTGCTGCTACCTCTGCTAGATGACTTATTCAAAGTGCACAAGCTGAAGccaattttaaaatggcagCAGTCATTTGAAAACTACCTGAAGACCATGCCTCCCTACTATATTGGGCCTCTGAAGAAAGCCCTGCGGATGATGGGGGCGCCTAACCTGATCGCTGATAACATGGAATATGGCCTGAGTTACAGTGTTGTTTCTTACCTCAAAAAGCTGAGTCAGCAGACTAAGCTGGAGTCGGAGCGGGTTATCTTGTCAGTGGGTAAGAAGGCACCGCAGGACTGTGGGGTGAAGGTGAGGAGCCGCGGCAACACCCTGTCCCTGGCTCAGCGTCGGGACTTCACTCAGATCCTGCAGGGCATCACCGGAGAGGCCCCTCTGTGCCCCCTGGAGCTCAACCCCAAGCAGTTCACTGGCTTCCACATCAGCGTACTCAATAAGGATTTCAAGCCCCAGAGTTTTCGCAACCCGTACGACATACCCAGACGACACCTGCTAGACCAGCTGACCCGGATGAGGAGAAACCTGCTGAAAGCGGCCCGCTGCTGGCTCAGAGGACAGGACGAAGATCAGCTGCACAGCATTCCCATTGCCCAGATGGGAAACTACCAGGACTTCCTGAAACACTCTCCCTCGCCCCTGCGCGAGGCAGACCCCGATCAGCCCAAACGCCTGCACACGTTCGGTAACCCCTTCAAACTGGACAAAAAGGGCATGATGATCGACGAAGCAGACGAGTTTGTCACCGGCCCTCAGAACCGGACCAAGCGCCCGGGGGACCCCAGCCTTCAGGGCGCGCCCAAGAGGAGGAGGTGCATGTCCCCACTGCTGCGGCCCGGCCGTCTCCCAGCTCCCTCTGTTGTCAGCAACAACGTGGGGGCAAAGGCTCCCCCTTCTCCACCCAGCCCTGCGCCACCGCTgccgctgccgccgccgccgccgccgccaaTCAGCCTCGCCAAAGCAATGCCGGTCATCCTCAAAGCTCCCGAAACAAACCATAGGGTACTTACAGATAATGATGTTTTTGGGAACCACATGGGTAACCAGTACATCCCTGAGAGGGCCCCTGTTCCTGATGCCGGCCTGAACTCGGACGGGTCCCCATTCCAGAGCAAAGCTGCCCCTGTGAACCATGTGGGTGACGTGGAGGACGGCCACTCCAGCCCCAGCGAGCTCTCGGAGGGCAGTGAGGAGGGGGAGCCCAGCACTGAGGACACCATGAGCAGCTCCTCACCGAGCCAGCTGAAGAGGCTGAGGCAGAGTCAGAGCCAAGAGCTCAATACCCAGCTCCGAGTGCTCATCACCAGGGAGATCAGGAAGCCAGGCAGGCGTTATGAACGAATCTTTTATTTCCTGAAGCAAGTCCAAGGGAGTTTTAATACAAGGCTAATATTCCTGCAGAATGTTATCAAAGAAGCATCAAGGTTTAAGAAGCGGGTGTTGATTGAACAGCTAGAGGGTTTTTTGGAAGAGATCCATATGCGGTCCAACCAGATGAATCACATGGATGGCTTTTCAAATTCTGCTTGAAATAATATGTGGTGTGTGAAACTCGGAATGGGAGTTCTGGAATTCAGTGGCTGCCCCAAACCAGTTTGACAGACGTACACGACACGTGGTACATGAGGCTGATCTGCACTGGCTGGGGAAGGggtggaagagagagaaaaaggctCCATGGACTGTCTTCTGCCTTTTCCTTATGATAGACTGGTTTATTACCCAAGGAAAACAAGGTGACCATAAAGCACTGCTGAACCCATAGGCCAGGTTCTTGGCCTTGCTGAGCACTCTGTTTTATACTCGGTGCAGGGGGCTAATACTGTATGCCTTCATTGCCTTGTCATCGGCAATGCAGATAAAATCTATAATTTCAAACTCAAGCTGTTTGGAAAGAATTTCAGATTTGTGCTCCTGGTCCATGTCCTTTCTTGACTTcaaccccccctttttttttttccttcatacGTATCATCTGaacagaattttgttttttaaatagttgGCTATTCTCTGAACACTTACAGTGaacctttttatatttattttaactttcatTGAGTTCTGTTCTGCTGTGGTTGATGCCCACAGTTTGTGTCACTAAAGCCCTCCCCTCCAGTTTAGAGAGGGTGTTCGAAGACCGATTAGTTGCAGTGTCACATGTACCCGAGTCCTGCAGCCAGAGGAGCACTGTTACACAGGAGAGGCTGAAGACCCAGGAGGTATCTGTAGGTGACTGTCCTTCAGGTTTTACCTACATTGCCAAATATTTGAAAACCCCCTGGACCCCACTCCCTTTTCCCCCAGTTGTGGGGGCTAGTCATTGCCACCTTGTTGTACTTTGTAATTTATGGagaacatgaaaatgtaaaaaaacaaacaaaacaaaaaaaaactaaaccaagtATTTTGActataatgtacaaatgtaaataactaAATTTTGAAacctatttaaagaaaacaacaaacaagccttttgtaattatttccatTAATAAAGTTTCTATTTTACACTGTGGATgacttgtaaataaaaatggaagacTGGGAAATTATGTGACCGATTGGATTTTGAAATGACATTACCTAGCATGTGGGATGGGTCACTGtatagggtgtgtgtgtggtgaagaTATAATTGGATCTAGAAAGTAGGCTTAAATCTTCAGTTCAATCACAATGACATATTGAAAGCAGGCTAACTGTCAT

Function

symbol description
ints6 Predicted to be involved in snRNA 3'-end processing. Predicted to be part of integrator complex. Orthologous to human INTS6 (integrator complex subunit 6).

NR:

description
PREDICTED: integrator complex subunit 6-like isoform X2

GO: NA

KEGG:

id description
K13143 INTS6, DDX26; integrator complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014473 True 4035 mRNA 0.50 17 15254396 15269030

Neighbor

gene id symbol gene type direction distance location
AMCG00014474 gk,LOC105019723 coding downstream 40329 15190111 ~ 15214067 (-)
AMCG00014475 NA coding downstream 65740 15180772 ~ 15188656 (-)
AMCG00014454 NA coding downstream 1068618 14183446 ~ 14185778 (-)
AMCG00014449 NA coding downstream 1076008 14167446 ~ 14178388 (-)
AMCG00014448 NA coding downstream 1106894 14144163 ~ 14147502 (-)
AMCG00014479 NA coding upstream 23735 15292765 ~ 15297333 (-)
AMCG00014478 NA coding upstream 33312 15302342 ~ 15303905 (-)
AMCG00014477 NA coding upstream 41145 15310175 ~ 15329912 (-)
AMCG00014483 NA coding upstream 67177 15336207 ~ 15348473 (-)
AMCG00014484 NA coding upstream 81774 15350804 ~ 15362930 (-)
G70346 NA non-coding downstream 12063 15238803 ~ 15242333 (-)
G70315 NA non-coding downstream 194622 15045852 ~ 15059774 (-)
G70238 NA non-coding downstream 1152240 14099364 ~ 14102156 (-)
G70169 NA non-coding downstream 1333066 13919521 ~ 13921330 (-)
G70094 NA non-coding downstream 1482124 13770177 ~ 13772272 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding upstream 105208 15374238 ~ 15376774 (-)
G70407 NA non-coding upstream 114603 15383633 ~ 15386700 (-)
G70425 NA non-coding upstream 237274 15506304 ~ 15506511 (-)
G70420 NA non-coding upstream 253490 15522520 ~ 15525014 (-)
G70458 NA non-coding upstream 374589 15643619 ~ 15644914 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2120645 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 3586859 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4117310 11125029 ~ 11137086 (-)
G69537 NA other downstream 4456249 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5193166 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 1453043 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 2177838 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 2320237 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 2721621 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3932773 19201803 ~ 19203567 (-)

Expression


Co-expression Network