AMCG00014476


Basic Information

Item Value
gene id AMCG00014476
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15332929 ~ 15336221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014476
CGCAGCCTCGCCTCTGATTGACAGATGAGAAACAAACACGTGTTCCAGCGCTGGtgtgagccaatcacagacGCGCACCTCTGGACAACTTGCACTTCCGGGGTCATGCGTTTTAAAACAACGATGGCTGGACACGACTTGCTGTGCTTATGCGACTTGATCCGATTGCTGTGGTCGCTTTTGATACCGTGCATCTACCTGAGCTTGGCTCTGACTGCtctgctcttcctcctcatccTGCTCATCCGGCTCTTGCTTCAGCGGAGGAAGACGCGCCGTGACGAGCAGGGAAAAGCCCCGGTCGTGGCCTTCTTCCACCCCTACTGCAATGCAGGAGGCGGCGGAGAGAGGGTCCTGTGGTGTGCGCTGAGAGCCCTTCAAAACAGGTACAAAGATGCCTCCTTCGTGGTGTACACGGGGGACCAGGGCGTCACAGGGGAGCAGATCCTCGAAGGCGTGCGCAGAAGGTTTAACATCAGGCTGCCTGGGCCGGTGAAGTTTGTGTTCCTTAACTATCGTATCCTGGTGGAAGCCAGCCTCTATCCACATTTCACCTTGTTGGGCCAAAGTCTGGGATCCATTGTGCTGGGATGGGAAGCACTCGTAGAACTGGTCCCTGACGTCTACATAGACTCTATGGGCTATGCCTTCACCTTGCCTGTGTTCAAGTACCTGGGAGCATGCCGCACAGGGAGCTACGTGCACTACCCCACCATCAGCATGGACATGCTGTCTGTGGTTCGTGAAAGAAACCCCAGCTTCAACAATGCAGACTTCATTTCGGCAAACCCCATTCTTAGCACCCTCAAGCTGATCTATTATTgcatgtttgcctttttttatggCCTGGTTGGCTCTTGCAGTGATGTTATAATGGTGAACTCCACGTGGACCCAGAACCACATCCTGGCTCTGTGGAGGTGCCGTGACCGCACAAGCGTGGTGTACCCGCCCTGTGACGTGCAGACCTTCCTGGACATCCCACTGGAGGGTGACGACGAGAAGAAGAGCCACAGCATTGTCTCAGTCGGTCAGTTCAGACCAGAGAAGGACCACCGCCTGCAGATCCGAGCATTTCGGAAGTTGTTGGACAAGAAGACGCCAGCGGAGCAGGCCTCCCTCAGGCTGGTGCTGATTGGCGGCTGTCGAAACCAGGAAGACGAGGACAGGGTGCTGCAGCTCAGAGGGCTGTGCCAGGAGCTGGGAGTTGGGGACAAGGTAGAGTTCAAGTTGAACATTCCATTTGAAGAACTGAAGAAGGAGCTCACTGAAGCCACCGTGGGTCTGCACACCATGTGGAATGAGCATTTCGGAATAGggATCGTGGAGTGCATGGCGGCAGGAACAGTCATTCTGGCCCACAAATCTGGAGGCCCAAAACTGGATATTGTGGTACCCCATGAGGGAGGGGTGACGGGGTTTCTGGCAGATGATGTAGACAGCTATGCAGAAGCCCTGGAGAAGATCCTGGCTCTGTCTCCTGAGGCCCGGCGGGAGATCAGGCACAATGCCCGCCTGTCAGTGGCTCGCTTCTCCGACCAGGAGTTTGAGGCCTGCTTCCTGTCAGCCACAGAGCCGCTGATGGGGGAGACTCTGCAAGCCACTCTACCTGCCAGGTAGCCTCCCttgctgtgactgtgtgtttaCACTAAAGGAGATCTCTTATAAAACGCATTGAGTACCAATAACCCTGGCCAAGTCTAATGAGCTAAGCACCACTAGTTTTCAGCAGTAGTAATTCCATTAATTCCCAGCATTATTTACTGCAATGCTTAGCTGTATCCTTGAAACTGATGTGCAAAACTATTACCCACCTCTATACAGTTGTAAACCTCTAATAGGAGAATGTCATAACTAGCGAGAACTACAGCAGCctacatgttttctgtttttgattttgtcacCTTAATTGATTCAGGAAGGATCAATACAATACATGCTGTAATGCACTTTAATAGTTCCAAAGGACAATTTCAAGTTGTCAGATatccattacattattttaaaaggaaaaaaagatatGACCAACCATTGTAAAATATTACGCTCTGCTGCCctaatttatttccaatatttCAGACCCCATTTTAAGTCTCATCAACTTTCCTGTGATAAtgctgtaaatattattttgtttctcagagTGTTAAAGGGAGATGGAGTGTAATGGCTCAGACAGTGTAATGTGATGTATAGTGTGTATAATGTCCTGTAGTaagttacaaataaaaacatctttaatTGTTCAACAAACGTTCAGACAGACAAGTTTAGCACCCCATAACTTCTCTGCTGATTTCTGATCGGTGatattactttgttttgaaattttGTCCATGActatttgttaataaaaacaccTTGATTGATACTATTGGTTACTTACAGCATGATCAGTTCTCTGagaattttattaaaaaaaatgtcaaggcCA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004377 GDP-Man molecular_function

KEGG:

id description
K03844 ALG11; alpha-1,2-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014476 True 2434 mRNA 0.49 4 15332929 15336221

Neighbor

gene id symbol gene type direction distance location
AMCG00014472 wdfy2,LOC106582235 coding upstream 45653 15273561 ~ 15287276 (+)
AMCG00014471 NA coding upstream 78958 15247771 ~ 15253971 (+)
AMCG00014468 NA coding upstream 153774 15164212 ~ 15179155 (+)
AMCG00014469 dmd,LOC106574979,LOC107692624,LOC107665951 coding upstream 195393 15089695 ~ 15137536 (+)
AMCG00014464 NA coding upstream 289474 15022999 ~ 15043455 (+)
AMCG00014480 med4 coding downstream 29475 15365696 ~ 15371378 (+)
AMCG00014486 NA coding downstream 143231 15479452 ~ 15485053 (+)
AMCG00014481 NA coding downstream 159004 15495225 ~ 15499833 (+)
AMCG00014482 NA coding downstream 181650 15517871 ~ 15522481 (+)
AMCG00014488 NA coding downstream 263938 15600159 ~ 15617165 (+)
G70286 NA non-coding upstream 152109 15179845 ~ 15180820 (+)
G70271 NA non-coding upstream 865185 14466704 ~ 14467744 (+)
G70221 NA non-coding upstream 1161917 14167446 ~ 14171012 (+)
G70054 NA non-coding upstream 1636058 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 1952525 13352333 ~ 13380404 (+)
G70378 itm2b,LOC108430053 non-coding downstream 14421 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 114557 15450778 ~ 15451268 (+)
G70413 NA non-coding downstream 164337 15500558 ~ 15500832 (+)
G70415 NA non-coding downstream 169593 15505814 ~ 15506048 (+)
G70418 NA non-coding downstream 186304 15522525 ~ 15525015 (+)
AMCG00014470 NA other upstream 90596 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 976061 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1127915 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 1643741 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 2081197 13246309 ~ 13251732 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 339410 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 793258 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 1129400 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 2028577 17364798 ~ 17487050 (+)
G71004 NA other downstream 2935633 18271854 ~ 18274360 (+)

Expression


Co-expression Network