Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00014481 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 15495225 ~ 15499833 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007210 | serotonin receptor signaling pathway | biological_process |
| GO:0006939 | smooth muscle contraction | biological_process |
| GO:0046883 | regulation of hormone secretion | biological_process |
| GO:0050795 | regulation of behavior | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0043198 | dendritic shaft | cellular_component |
| GO:0004993 | G protein-coupled serotonin receptor activity | molecular_function |
| id | description |
|---|---|
| K04157 | HTR2; 5-hydroxytryptamine receptor 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00014481 | True | 1008 | mRNA | 0.50 | 2 | 15495225 | 15499833 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014486 | NA | coding | upstream | 10172 | 15479452 ~ 15485053 (+) |
| AMCG00014480 | med4 | coding | upstream | 123847 | 15365696 ~ 15371378 (+) |
| AMCG00014476 | NA | coding | upstream | 159004 | 15332929 ~ 15336221 (+) |
| AMCG00014472 | wdfy2,LOC106582235 | coding | upstream | 207949 | 15273561 ~ 15287276 (+) |
| AMCG00014471 | NA | coding | upstream | 241254 | 15247771 ~ 15253971 (+) |
| AMCG00014482 | NA | coding | downstream | 18038 | 15517871 ~ 15522481 (+) |
| AMCG00014488 | NA | coding | downstream | 100326 | 15600159 ~ 15617165 (+) |
| AMCG00014489 | lcp1,LOC106582249 | coding | downstream | 130357 | 15630190 ~ 15654845 (+) |
| AMCG00014487 | zc3h13,LOC105022574,LOC106573267,LOC106510916 | coding | downstream | 157096 | 15656929 ~ 15671148 (+) |
| AMCG00014496 | pdcl3,LOC106586481,LOC102788355 | coding | downstream | 200321 | 15700154 ~ 15703459 (+) |
| G70409 | NA | non-coding | upstream | 43957 | 15450778 ~ 15451268 (+) |
| G70378 | itm2b,LOC108430053 | non-coding | upstream | 64373 | 15350642 ~ 15430852 (+) |
| G70286 | NA | non-coding | upstream | 314405 | 15179845 ~ 15180820 (+) |
| G70271 | NA | non-coding | upstream | 1027481 | 14466704 ~ 14467744 (+) |
| G70221 | NA | non-coding | upstream | 1324213 | 14167446 ~ 14171012 (+) |
| G70413 | NA | non-coding | downstream | 725 | 15500558 ~ 15500832 (+) |
| G70415 | NA | non-coding | downstream | 5981 | 15505814 ~ 15506048 (+) |
| G70418 | NA | non-coding | downstream | 22692 | 15522525 ~ 15525015 (+) |
| G70496 | NA | non-coding | downstream | 227601 | 15727434 ~ 15728917 (+) |
| G70562 | NA | non-coding | downstream | 418580 | 15918413 ~ 15918621 (+) |
| AMCG00014470 | NA | other | upstream | 252892 | 15221914 ~ 15242333 (+) |
| AMCG00014461 | NA | other | upstream | 1138357 | 14302447 ~ 14356868 (+) |
| AMCG00014456 | NA | other | upstream | 1290211 | 14189564 ~ 14205014 (+) |
| AMCG00014423 | pou2f1b,LOC107748141 | other | upstream | 1806037 | 13655238 ~ 13689188 (+) |
| AMCG00014407 | LOC107725344 | other | upstream | 2243493 | 13246309 ~ 13251732 (+) |
| AMCG00014490 | rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 | other | downstream | 175798 | 15675631 ~ 15685899 (+) |
| AMCG00014508 | NA | other | downstream | 629646 | 16129479 ~ 16139032 (+) |
| AMCG00014525 | NA | other | downstream | 965788 | 16465621 ~ 16469209 (+) |
| AMCG00014553 | atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 | other | downstream | 1864965 | 17364798 ~ 17487050 (+) |
| G71004 | NA | other | downstream | 2772021 | 18271854 ~ 18274360 (+) |
