AMCG00014487 (zc3h13,LOC105022574,LOC106573267,LOC106510916)


Basic Information

Item Value
gene id AMCG00014487
gene name zc3h13,LOC105022574,LOC106573267,LOC106510916
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15656929 ~ 15671148 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014487
CGCCTGACGGAGGGAGCTGTGTATACAGCGTTACGAGAATGAAGACGAACTGGGGGGTCTCAGTGTTTGAAATACAAGGGTTTCACTTGTAATTTCAAGGGAGAAGCCCCCCACAAACAAGCAACAACTGCAAATCTGGATACTGCATCGATTGAACACTTAACGGTTGCAGCCCTGCAGAATGTCCAAGATCAGGAGGAAGGTAACAGTGGAGAATTCAAAGACCATTTCTGACAGCACCTCCCGCCGCCCCAGCGTGTTCGAGAGACTTGGGCCCAGCACTGGAAGTAATGCCGAGACACACTGTCGAAACTGGCTAAAGACTGGTAACTGTATTTACGGAAATACCTGTCGTTTCACACATGGAACTCAGCCCAGAGGCAAAGGTTTTAGTGGTTCATACAGAAGGTCACCTGAGAGACCAACTGgagatctgagagagagaatgaagaaCAAACGCCAAGATGTGGAACCTGAAGCTGCTAAGAGAAATCCAGAAGAGCCCACCTCTCCCACAGCTCGAAGAGACTCTTCAAGAAGCAGACATCGTGAGAAAGAAGATATAAAGATAACAAAAGAGAGAACGCCAGACAGTGAAGACGAGCCTACTGAATGGGAGGCCAACCGGGAAGactCGGATAATGgagattatgattatgaattgTCCCTGGAAATGAAAAGGCAAAAGATTCAGCGTGAGTTGATGAAGCTGGAGCAAGAAAACATGGAGAAGAGGGAAGATATAGTCATCAAGAAGGAGatCTCTCCTGAGCCTGTCAGTTCTAAAGGATCCCCTTCATCAAGAAAATCCAGTGGGTCACCTAAACACAAAGCAGCCACTAAAGGTGCTTCTGCaagcaagaaagagaaaaagacgTCTGTGATTTCCTCACCTGTATCCGATCAGACCAGGTCTTCCAAGGCTGTCCACGGAAAAAAGAAAGGCCCTCGGACCCCCAGCCCACCACCTCCTGCCCAGGAGGAGAACCCTGTTGGCaagaaacacaaaggaaaacacaaaactaaagagAAGATGGAGGAGAAACCCAAGGAGCCCAAAGAAAGGGGCCGGGACACGGAGAAGCACAAGGAAAGGAAGGAGAAGCGAAGGGATCGCTCAGAAAGCTCTCACAAGCTGAAGAGGTCCTTAAGCCCGGAGGACCAATCTGGCAGCACGTCTTCGCCATCCAGAGAGATTTCCCCCTCCACACGCAGGAAATCAGCCTCTCCCAATGCACCCAGACCTGCAGCACAGAAACCCCTGCCCTCCCCATCCCGCAGGTCCCCTGCATCCCCACGGCATCGCCGcacccccactccccccagGCACCACTCGCCTTCCTCCCACTCAGGCTCCTCCGCTCAGAGACACTCCCCCTCCCCTCGACGCAAGCGCTCGGTGTCGCCCTATCAGCGGGAGCCAGCCACGTCCCCCACCCAGAGACGCTCGCGCTCCCCGGTTGCGCAGAGGCCCTCCTCCCCACCACAGCGCCGGGCCAGTCCCAGCCGGAACCAGTCCCAGGGCAGAGATAAGGGCAGgcctgagagggagaggagcaCCCCGTCACACGACCGCCGCCATGAGCGCAGAGATGAGAGCcgtgggaagagagagaaggagggccGTGAGGAGCGCGAGTACGACGCGGAGCCCAGTTCATCACGGGATACccgggaggagagagagagcagagaggagcGGGGGCGGCGTGAGACCCGGGACCGCAGGGACACCCGTGACACCAGGGACACGCGTGAGCACCGCGACAGCAAGGACACGCGGGAGCCCCGGGCGGAAGCACGCTCCACACGCGACTCGCATGACTACAGAGAGCGTGACAGAGAGCGCGACCGAGAGAGGGACCGCGGGGACGCGCACAGGAAGGACGAGCCCTTTCAGGAGGAGAGGAGCTACGGCAGGGGCCATGCTAGGGAGGACAGTAGCCGCACCGAAACCAGGGCCGAGCTTCGCAATGACTCTAGAAATGAACCCCGGAGCGAGAGacctgggagagggagaggccgAGGCACTGAGCCGGCTGAGAAGGGAGTTCGTGGATCAAGAGGGACTCAGTTTGacagccacagcagcagcagcagcaacttcCATGACAACTGGGAGTCACGCAGCAGCTACCCCGAGCGCGGGGCCGAGCGCGGGGCGGAGCGCGGGGCGGAGCGGGGTGCCGAGCGCGGGGCGGAACGAGGGGCCGAGCGCGGGGCAGAGCGGGAGCGCTATGATGGAGACCGGCGGGAACAAGCCAGAGACTCCTCATTTGACCGCCGAGGCCATGCAGAACGTGATCGCAGGGAAAACCGAGACCGAGACACGAGACTGCCCTCACCAACAAGACACCAGGGCCGCAGCGATGACCTGGAGCGAGAGGACAGGAGAGACGAGCGCAGGGCTGACAGGGGGGAGGACAGACGAGAAGACAGGGCCAGGGAGAGGGAGCGTGACCGGGatcgggagagggagaaggagagagagaaggaacgggagaaggagaaggagcgggagagggaaaaagaaagggaGGCCGAGCGTGAACGAGCCAGGGAGcgggagcgggagagagagagggaccgggagcgagagcgagagcgggagagggagagggagagagagagggaaagggagcgagagagagtggagagggaggagagagagcgggagaggaaggagagggaacgggagagggagaggcagagggattGGGAAGACCGGGAGAAAGGAAGGGAGGAGCGACGGAGGGAGGAACAGAGGGAAGAGCGCACCGTCAGAGATGTGCATGAGGACAGGAAACCCAGCAGGAAGAGGCATCGTGTGGAGAGCAGCCCCAGCCCTCGACCCTCTCCAAAGAGAGCCAGGGAAGCCAGTCCAGACAGTGAAGGTGACAACAGCACCGAGGAGAAAAATGAGAAACACCGGTTGCTGAGCCAGGTGGTGCGACCGCAGGAACCCACTCGCTCCCCACCACGCACTGTGCCCGAGGAGAAGCCCAGCCGCTGGAAGGAGGAGGATAGGAAGGTGGAGAAGAAAGACAGCATCCGCACCAGACATGAGGAGCTGGATCTGCGGGACAGAGGCGCTGCTACCAGGGGAGAGCGTCCGAGGGAGCACCTCCTGGACATTGTCGCTGCAGGGGTTTCGGACACCCGCAGGACCAAGGAGCCCCTGGACACAACCCCACACCCCCCTGCTGAGGACAGGGAGGCTGCCCACGAGGAGGTCAAGAAGAAGACCAAATCCCAGAAGAAAGGCCTGAAGAAGAACCGCAAGGAGGAGGAAGTCAGCAGCGGTGCGGAGAGGTTCGCCACAGAGCAGCCAGTCGCCGAAGAGACCCCTCTGCTGTCTCCAAGGAAAGTGCCTAAGAAAAAAGCGGTGGAAAAGAAACGCAAGCGCTCACGAGGTGGGGAGTCGGACATCTCGGAGGAGGATACGGCGGCCCAGCAGCTGAGCAAGAAGAAAAGGGGCCCCAGGACACCTCCACTCATGGTACCTTCTGTAGTCAAGGAAGAGTTCCCAGTCCAGACTGTGGAGAAGGCTCCTCCTGTTGAGGTGATTCCACCCATCAAGGCAGACACCACCTTCAGCGACTGGTCTGACGAAGACGTACCTGAGCGTGGGGATATCGTGCCTCTGCCTCCTGCTGAGAAAGTCCCGCAAGAAGCTCCAAAGAAGGCAATCAAGGGCAAGGACAGGCTAGAACCACTAATCGCCCCCCTGTTGGCTCAGGAGCCGCCCTTATTGCTCCAGTTGCAGCAGCAGTTGCCCCTTCAGCCCCTGATGCCCCAGCACCTCATGCGCAAGGCCTCGGAGCAGAAGCGCAGCAGCAGCCTGGGGAGCAACCAGAGCCGCACCTCCTCGCGCCACCTCCGGTCCCCCTCCAACGAGTCGACGCACCGCGGTGGTGAAGACCACAGCGCCCGCAGGAGGAGGCTGCAGGGGGAGTCACGCGaccgggagagggagagagagcgggatAGAGAgcgggaaagagagagagcctCTGCCGCGGAGCCACCCATAGAGAGAAAGTCCCGTATCGATCAGCTGAAGCGCGGTGAGCCGAGCCGCAGCACGTCCTCGGATCGCCAGGATTCCCGGAGTCACAGCTCCCGGCGGAGCTCTCCGGAGTCGGAACGCCAGGCTCGCTCCCGGGCGGGATCCTACGACGGCagagagcgggagagggagCGGGAACGAGAGAGGGAACAGATCGAGAGGGACCGGGAGCGCAAGGATATCCGGCAGAGAGACTGGGAGCGGGAACCAGACACTCGGGAGTGGGGCCGAGGTCGGGAGCCCCTCCGAAACCGAGAGCCAAGAGACCGGGAGAGGGAGCCGCGCAAGAGGGACGTGGACCCGGAGAGGGACAGACACCTGCCCGAGGGTCACGACAGGGACCGGGAGAGGCTGCAGGACATTCCCATTCTCTGCGAGTTGAAGAGAGCGGAGCCAAAGCTGGAGAGAGACTTTGAGCCACTTCTGCGTGAAGTTGTGACTATAGACCCAGTTAGAGTGGACAAGAATGCCGAAATCCCTCGTGTCATGGAGGAAGCACATGAAGCAGCGAAACTGGACAACATGGAAGCGGAGGATGATGGGAAAGCCGAAGACTCACAGTCCATGGTGTCGGGTGGAGAGGAGTATGAACCCATCAGTGATGACGAGCTGGATGAGATCCTGGCTGACAGCGCACAAAAAAAGGAAGACCAGCAGGATGAGGAGAAAATCCCAGGTCCTCTGGATGTGATCGATGTGGACTGGTCCAGCCTGATGCCCAAGCAGAAGAAGGAGCCCCGAGCGGCCGGGGCTGCTCTGCTCAAGTTCACCCCAGGCGCAGTGCTCCTCAGGGCTGGCGTCTCCAAGCACCTGGCCGGGGCCGAGCTCTTCGCTAAGGTGAAGGAGACCTGCAAGGGAGAGCTGGAGGACCACAAAGATGCTGATAAGCTGTTTGAACATGAGCTGGGAGCCCTGAACATGGCGGCTCTGAACAGGAGAGAGGAAAGGGCCGGCCTGCTGAGGAACCTGGGGCCGTGCTGCAAAGCGCTCTGCTCCCGGAGAGACATCACCATCCGTAGACAGCTGCTCAAGAACGACAAGGGCACAACAAAGCAGATCTACACCAGTGCTCCAGTTGTGGACAATGAGCTGCTGCAGTTGAGCATCCGGTTGTTCAAGAAAAAGACTGCATGTCCGCTCCCAAGCCAGGAGAAAGTAGAGAGCAGCACACTCCCTCAGCCAAGCACACAGGCCGAAGTGTGCGTCTCGTAACATCTCAATCCCGCTGTGCGATTGGAAAAGACTTAATAGAGACTGGTGGATACTAGCCTATGGAGAGGATCCTGTGCATTGCACTGAAATTTGAATAGAGCAAAACAATTCTGTTATACTGTCATTTTTAgagcttttttttgtattactgttccATGTCATAGTTCTTTTTAACCAGCTGTACTGAAGTGTTGTTGTGCATCAGTTATTAAGCTGAGCATTAAAACTTATTGCTGTTTGTAATTCAGGGTGTTGGGTTATTTTTgcataaaggggaaaaaacatttgtgttttgtaaactGAGGATACTTAAATGTTGCTATGGAAAGCAAAATATTAGGTACATagtttattcaaatgtaaaaagcactgccttttaataaacaatactcACCTGGCCATTCCCC

Function

symbol description
zc3h13 Predicted to enable metal ion binding activity. Orthologous to human ZC3H13 (zinc finger CCCH-type containing 13).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22909 ZC3H13; zinc finger CCCH domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014487 True 5688 mRNA 0.58 20 15656929 15671148

Neighbor

gene id symbol gene type direction distance location
AMCG00014489 lcp1,LOC106582249 coding upstream 2084 15630190 ~ 15654845 (+)
AMCG00014488 NA coding upstream 39764 15600159 ~ 15617165 (+)
AMCG00014482 NA coding upstream 134448 15517871 ~ 15522481 (+)
AMCG00014481 NA coding upstream 157096 15495225 ~ 15499833 (+)
AMCG00014486 NA coding upstream 171876 15479452 ~ 15485053 (+)
AMCG00014496 pdcl3,LOC106586481,LOC102788355 coding downstream 29006 15700154 ~ 15703459 (+)
AMCG00014494 NA coding downstream 44652 15715800 ~ 15725440 (+)
AMCG00014495 NA coding downstream 64497 15735645 ~ 15749118 (+)
AMCG00014501 NA coding downstream 109441 15780589 ~ 15781550 (+)
AMCG00014500 LOC101071565 coding downstream 152128 15823276 ~ 15870879 (+)
G70418 NA non-coding upstream 131914 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 150881 15505814 ~ 15506048 (+)
G70413 NA non-coding upstream 156097 15500558 ~ 15500832 (+)
G70409 NA non-coding upstream 205661 15450778 ~ 15451268 (+)
G70378 itm2b,LOC108430053 non-coding upstream 226077 15350642 ~ 15430852 (+)
G70496 NA non-coding downstream 56286 15727434 ~ 15728917 (+)
G70562 NA non-coding downstream 247265 15918413 ~ 15918621 (+)
G70637 NA non-coding downstream 565962 16237110 ~ 16240338 (+)
G70735 NA non-coding downstream 819263 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 1059730 16730878 ~ 16733637 (+)
AMCG00014470 NA other upstream 414596 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1300061 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1451915 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 1967741 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 2405197 13246309 ~ 13251732 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 4483 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 458331 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 794473 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1693650 17364798 ~ 17487050 (+)
G71004 NA other downstream 2600706 18271854 ~ 18274360 (+)

Expression


Co-expression Network