AMCG00014490 (rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250)


Basic Information

Item Value
gene id AMCG00014490
gene name rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15675631 ~ 15685899 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014490
atgtttctcCAAGTCTACAAACTCACCGGAGAGCTGCTTCTCCTGCTCCTCCCCAACGGGTGCGGGGTTCAAGAGGTGAGCGAAGACGGCGGCGAAGGGGTTTGCAGCCAGCGGCTCGGTGCGATACATCTCCCACAGCAGGTACAGGGCGGTCAGGCGCTGCGGCGAGCTGGGCAGGAGGTCTGGCTGCTGCAGCAGCATCACCAACACCGAGCCCACTCGGAAATGCTCGGCTTTCCCAAAGTAGTGATGGAAGGCAGTGGAAAGACCTTCAAAGGCCTGCAGACGGTCAACCCAAATGGCAAACGGCTTGAAGCTGATGAGGGAGTCCCTGTGTTGGTCCAGCAGTGTGAAGGTGCGGTGGGCTACGGCATCCGTGTGGACCCCGCACAGCCAGGGGGACAGCAGCTGGTAGAGGCTCTTGAACTGCGGACGGTCGATCCTGTACTGCTCCACGTACTGCAGGCTGGGGTCATGGAGCTGCAGGGCCGTCACCGTCCTCCCCCAGTAGCAGTTTATAAAAATCATCATGACCTGCCCATCGTCGGTGCTGCTGCAAAGGGCTGCCGCGTTGGCATCCAGCACCGCCAGTCCCAGCTGGAAAATGGCCTTGATGCCATCATAGAAGAAGCAGTCCACCACGCGGACAGCACTCTCAAAGGGCATGATGCTGAGGAACAGGGTGAGGAAccaggagagggagatggaggagagTGGGGAGAGGTCGGGGATGTGCTCGGCCAGCTCGGGCAGCCGCTCCTTTATCAGCTCTTCAAACACTGA
>TU88057
CTGATGCCTGACAAAGTTTAGATGCGTCTGTGCCATCAAatacacacaacagacacaccCCCTTACATTAGTTGCTGACCCTTTGGTATTTACAGATCTCATGTGTTCTCtgtatgcttttaaaaacaccGTTCATCAAttgagaaatataaatgtttctcCAAGTCTACAAACTCACCGGAGAGCTGCTTCTCCTGCTCCTCCCCAACGGGTGCGGGGTTCAAGAGGTGAGCGAAGACGGCGGCGAAGGGGTTTGCAGCCAGCGGCTCGGTGCGATACATCTCCCACAGCAGGTACAGGGCGGTCAGGCGCTGCGGCGAGCTGGGCAGGAGGTCTGGCTGCTGCAGCAGCATCACCAACACCGAGCCCACTCGGAAATGCTCGGCTTTCCCAAAGTAGTGATGGAAGGCAGTGGAAAGACCTTCAAAGGTGTTGGTGCAGGCTTCCTCAGAGATGATCCCCAACAGATTGGAGAGCTCCTTCGGGGCCAGCGTCATTGTTCTCTAACGGGGTTGTACAGAACCAAAACTGGAATTTATTCTTGAATTGTGTTCAAAAACGCGGGCTCATGGTACTAACCATCAACTGCACCCTCCTTGCAGTCCGTAACTATGGCCAGCATTCCTCCGTATAGCCCTTTAGTACCAAAAATATAGTAAACCgccacaaacacaacaaataacGGCTTTACAAGCAACCCAAACGTTTAAAAGTAAACCAgaacaaaatctaaaaataaaaaagacccATATGACACCAATATCCgtataaaataaacttcagtGTGTGAAACACCAGGGCTCTTTAAATACGGCACTGctgtcagtgttgtgtttttacgACAACCAAGGTGCATCATGGGAAAAGTAGTTTGGTTTACGTAATTCACGTTCCCGTAAGATTTAAACCATAGACATTCAAACAAGGACTTCCCTCGATAACTATGGTTTAATCATTGAAGTtgataattcatgtttttcagaaatgtttgattttttaagttaaaagtaCATcgtatatttatgtaatttactttTGCATACTCCGTTTCTTGTCACCGTTTCGTTGTTTTATTACAATCGCCTGTGTTTACGTACAGGCCGGCCTCTGTGCCCCGGAAGCGGTTCCTCTCTGCAGGTTTAGTATTACCCAGAAGCCCTGAAGTCCTTCCTTTCCGACATTTTCCCCGGCAGAATGGCTCCAATAAAGAAAGGTGGAGAGAAGAAGAAGGGTCGTTCTGCCATCAATGAGGTGGTGACGAGGGAATACACGATCAACATCCACAAGCGCATCCATGGCGTGGGCTTCAAGAGGAGGGCTCCTCGCGCTCTGAAAGAGATCCGCAAGTTCGCCATGAAGGAGATGGGAACTCCTGATGTCCGCATTGACACTCGTTTGAACAAGGCTGTGTGGACCAAAGGCGTGAGgaaCGTACCATACAGGATCCGTGTTCGTTTGTCAAGGAAACGCAATGAGGATGAAGATTCTCCCAACAAACTGTACACCCTGGTCACATATGTTCCAGTCACCACATACAAAGGCCTGCAGACGGTCAACGTTGAtgagaattaaaatgttctctgttaaaataaatttgtaAATCAAATCTTTTTGTTGTGTGGCTTTTCAAAATTAGCATCTTGCAGTTAGGGGTATATACTTTTTCTGACCCCCCCCTTCAGATTGTTACTCCTGATAAACTTtcaatgatttgtttgttgattCAACACTAGTGTTTTAGGTAGTActctttaaaaattaaaaccgATTGTGATACAGTAAACATTTCATAGTGCTGGGTTTAGTTTGAACTGTGCTATGTGAAAGATGCATGATttaaagtttgtatttacttGGTGATGTCTGGGTTTCATATAGAAATTATGGGTTACAATTACAACATTAAAAGCGGTCATTCTGACTATAGTGTACATATCAGTGAAACCTGAATTAAGATTAAACGTGTTTAAATTGATAGATATAGGGAATTGCAGAGCCTCTTCAACCCTGAGTCATTACGTTGCACATAGCAGGAGTTGAATTATAATTTTGCATCAGTTACCATGAATACAAGTATTAGTGTGAAAGGTCAAAAAGACCATTCGGGGAAGTACAGTTGAAATAAGGATGTTTTCAAGCTGCTGAATATCTTTTGCCTGGAAGCCACATCATGATGCccttaattaaaagcaaatacagCAGTAAAATGCACTATTGTCACTGCATGGATCAGAGAGGCTTTTACTTGGTAATATGTAAG
>TU88058
CTGATGCCTGACAAAGTTTAGATGCGTCTGTGCCATCAAatacacacaacagacacaccCCCTTACATTAGTTGCTGACCCTTTGGTATTTACAGATCTCATGTGTTCTCtgtatgcttttaaaaacaccGTTCATCAAttgagaaatataaatgtttctcCAAGTCTACAAACTCACCGGAGAGCTGCTTCTCCTGCTCCTCCCCAACGGGTGCGGGGTTCAAGAGGTGAGCGAAGACGGCGGCGAAGGGGTTTGCAGCCAGCGGCTCGGTGCGATACATCTCCCACAGCAGGTACAGGGCGGTCAGGCGCTGCGGCGAGCTGGGCAGGAGGTCTGGCTGCTGCAGCAGCATCACCAACACCGAGCCCACTCGGAAATGCTCGGCTTTCCCAAAGTAGTGATGGAAGGCAGTGGAAAGACCTTCAAAGGTGTTGGTGCAGGCTTCCTCAGAGATGATCCCCAACAGATTGGAGAGCTCCTTCGGGGCCAGCGTCATTGTTCTCTAACGGGGTTGTACAGAACCAAAACTGGAATTTATTCTTGAATTGTGTTCAAAAACGCGGGCTCATGGTACTAACCATCAACTGCACCCTCCTTGCAGTCCGTAACTATGGCCAGCATTCCTCCGTATAGCCCTTTAGTACCAAAAATATAGTAAACCgccacaaacacaacaaataacGGCTTTACAAGCAACCCAAACGTTTAAAAGTAAACCAgaacaaaatctaaaaataaaaaagacccATATGACACCAATATCCgtataaaataaacttcagtGTGTGAAACACCAGGGCTCTTTAAATACGGCACTGctgtcagtgttgtgtttttacgACAACCAAGGTGCATCATGGGAAAAGTAGTTTGGTTTACGTAATTCACGTTCCCGTAAGATTTAAACCATAGACATTCAAACAAGGACTTCCCTCGATAACTATGGTTTAATCATTGAAGTtgataattcatgtttttcagaaatgtttgattttttaagttaaaagtaCATcgtatatttatgtaatttactttTGCATACTCCGTTTCTTGTCACCGTTTCGTTGTTTTATTACAATCGCCTGTGTTTACGTACAGGCCGGCCTCTGTGCCCCGGAAGCGGTTCCTCTCTGCAGGTTTAGTATTACCCAGAAGCCCTGAAGTCCTTCCTTTCCGACATTTTCCCCGGCAGAATGGCTCCAATAAAGAAAGGTGGAGAGAAGAAGAAGGGTCGTTCTGCCATCAATGAGGTGGTGACGAGGGAATACACGATCAACATCCACAAGCGCATCCATGGCGTGGGCTTCAAGAGGAGGGCTCCTCGCGCTCTGAAAGAGATCCGCAAGTTCGCCATGAAGGAGATGGGAACTCCTGATGTCCGCATTGACACTCGTTTGAACAAGGCTGTGTGGACCAAAGGCGTGAGgaaCGTACCATACAGGATCCGTGTTCGTTTGTCAAGGAAACGCAATGAGGATGAAGATTCTCCCAACAAACTGTACACCCTGGTCACATATGTTCCAGTCACCACATACAAAGGCCTGCAGACGGTCAACGTTGAtgagaattaaaatgttctctgttaaaataaatttgtaAATCAAATCTTTTTGTTGTGTGGCTTTTCAAAATTAGCATCTTGCAGTTAGGGGTATATACTTTCTGATAAACTTtcaatgatttgtttgttgattCAACACTAGTGTTTTAGGTAGTActctttaaaaattaaaaccgATTGTGATACAGTAAACATTTCATAGTGCTGGGTTTAGTTTGAACTGTGCTATGTGAAAGATGCATGATttaaagtttgtatttacttGGTGATGTCTGGGTTTCATATAGAAATTATGGGTTACAATTACAACATTAAAAGCGGTCATTCTGACTATAGTGTACATATCAGTGAAACCTGAATTAAGATTAAACGTGTTTAAATTGATAGATATAGGGAATTGCAGAGCCTCTTCAACCCTGAGTCATTACGTTGCACATAGCAGGAGTTGAATTATAATTTTGCATCAGTTACCATGAATACAAGTATTAGTGTGAAAGGTCAAAAAGACCATTCGGGGAAGTACAGTTGAAATAAGGATGTTTTCAAGCTGCTGAATATCTTTTGCCTGGAAGCCACATCATGATGCccttaattaaaagcaaatacagCAGTAAAATGCACTATTGTCACTGCATGGATCAGAGAGGCTTTTACTTGGTAATATGTAAG

Function

symbol description
rpl31 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL31 (ribosomal protein L31).
cnot11 Predicted to be involved in mRNA catabolic process and negative regulation of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT11 (CCR4-NOT transcription complex subunit 11).

NR:

description
60S ribosomal protein L31

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014490 False 783 mRNA 0.60 4 15675783 15685899
TU88057 True 2260 TUCP 0.43 5 15675631 15679788
TU88058 False 2231 TUCP 0.43 6 15675631 15679788

Neighbor

gene id symbol gene type direction distance location
AMCG00014487 zc3h13,LOC105022574,LOC106573267,LOC106510916 coding upstream 4483 15656929 ~ 15671148 (+)
AMCG00014489 lcp1,LOC106582249 coding upstream 20786 15630190 ~ 15654845 (+)
AMCG00014488 NA coding upstream 58466 15600159 ~ 15617165 (+)
AMCG00014482 NA coding upstream 153150 15517871 ~ 15522481 (+)
AMCG00014481 NA coding upstream 175798 15495225 ~ 15499833 (+)
AMCG00014496 pdcl3,LOC106586481,LOC102788355 coding downstream 14255 15700154 ~ 15703459 (+)
AMCG00014494 NA coding downstream 29901 15715800 ~ 15725440 (+)
AMCG00014495 NA coding downstream 49746 15735645 ~ 15749118 (+)
AMCG00014501 NA coding downstream 94690 15780589 ~ 15781550 (+)
AMCG00014500 LOC101071565 coding downstream 137377 15823276 ~ 15870879 (+)
G70418 NA non-coding upstream 150616 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 169583 15505814 ~ 15506048 (+)
G70413 NA non-coding upstream 174799 15500558 ~ 15500832 (+)
G70409 NA non-coding upstream 224363 15450778 ~ 15451268 (+)
G70378 itm2b,LOC108430053 non-coding upstream 244779 15350642 ~ 15430852 (+)
G70496 NA non-coding downstream 41535 15727434 ~ 15728917 (+)
G70562 NA non-coding downstream 232514 15918413 ~ 15918621 (+)
G70637 NA non-coding downstream 551211 16237110 ~ 16240338 (+)
G70735 NA non-coding downstream 804512 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 1044979 16730878 ~ 16733637 (+)
AMCG00014470 NA other upstream 433298 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1318763 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1470617 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 1986443 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 2423899 13246309 ~ 13251732 (+)
AMCG00014508 NA other downstream 443580 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 779722 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1678899 17364798 ~ 17487050 (+)
G71004 NA other downstream 2585955 18271854 ~ 18274360 (+)
G71525 NA other downstream 7169443 22855342 ~ 22855646 (+)

Expression


Co-expression Network